Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AFF3 3899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 100625302 100625302 + Missense_Mutation SNP C C G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd AIPL1 23746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 6331788 6331788 + Silent SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ALMS1 7840 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 73746997 73746997 + Missense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ANK3 288 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 61868693 61868693 + Missense_Mutation SNP C C G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ANXA3 306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 79518556 79518556 + Missense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ARHGEF10L 55160 broad.mit.edu;hgsc.bcm.edu 37 1 17990994 17990994 + Silent SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ATP8B1 5205 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 55361849 55361849 + Missense_Mutation SNP T T C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd B4GALNT1 2583 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 58020623 58020623 + Silent SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd BCAR3 8412 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 94057948 94057948 + Silent SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd BCO2 83875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 112064374 112064374 + Silent SNP T T C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd C11orf9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61545943 61545943 + Silent SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd C13orf31 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 44462991 44462991 + Missense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd C2orf86 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 63631341 63631341 + Missense_Mutation SNP A A T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd C6orf145 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 3723939 3723939 + Silent SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd C9orf3 84909 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 97823038 97823038 + Silent SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd CCHCR1 54535 hgsc.bcm.edu 37 6 31113524 31113525 + Frame_Shift_Ins INS - - G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd CDK5RAP2 55755 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123222946 123222946 + Splice_Site SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd CLTC 1213 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 57758814 57758814 + Missense_Mutation SNP T T C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd COL15A1 1306 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 101829277 101829277 + Silent SNP T T G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd COPS2 9318 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49429387 49429387 + Missense_Mutation SNP T T C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd CSK 1445 broad.mit.edu;hgsc.bcm.edu 37 15 75091783 75091783 + Missense_Mutation SNP T T A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd CTAGE5 4253 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 39782629 39782629 + Missense_Mutation SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd CYP26B1 56603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 72371136 72371136 + Silent SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ECEL1 9427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 233349705 233349705 + Missense_Mutation SNP G G C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd EHMT1 79813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 140695437 140695437 + Splice_Site SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd EML4 27436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 42472705 42472705 + Nonsense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd EPHB4 2050 broad.mit.edu;hgsc.bcm.edu 37 7 100417900 100417900 + Missense_Mutation SNP A A C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd FMN2 56776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 240370231 240370231 + Missense_Mutation SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd GJB6 10804 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 20797015 20797015 + Missense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd GRIA1 2890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 152873521 152873521 + Missense_Mutation SNP A A G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd GRM5 2915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 88300984 88300984 + Missense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd HIF1A 3091 broad.mit.edu;hgsc.bcm.edu 37 14 62211422 62211422 + Splice_Site SNP G G C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd HLA-DRB1 3123 hgsc.bcm.edu 37 6 32549345 32549346 + Frame_Shift_Ins INS - - CA rs35837054 bycluster TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd HUS1 3364 hgsc.bcm.edu;ucsc.edu 37 7 48008881 48008881 + Frame_Shift_Del DEL A A - novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ITSN2 50618 hgsc.bcm.edu;ucsc.edu 37 2 24435589 24435589 + Frame_Shift_Del DEL C C - novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd JAG1 182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 10627597 10627597 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd JAK2 3717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 5022145 5022145 + Missense_Mutation SNP A A C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd KALRN 8997 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 124215189 124215189 + Missense_Mutation SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd KCNN2 3781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 113698884 113698884 + Missense_Mutation SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd LRRIQ3 127255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 74507303 74507303 + Missense_Mutation SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd MIR548H3 100302287 broad.mit.edu;hgsc.bcm.edu 37 6 97587192 97587192 + RNA SNP A A C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd MRPL30 51263 broad.mit.edu;hgsc.bcm.edu 37 2 99812127 99812127 + Missense_Mutation SNP T T G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd MTTP 4547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 100521758 100521758 + Silent SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd NBR1 4077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 41349125 41349125 + Splice_Site SNP T T C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd NCOA3 8202 hgsc.bcm.edu 37 20 46279866 46279866 + Silent SNP A A G rs28529067 bycluster;byfrequency;by1000genomes TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd NUAK2 81788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 205272654 205272654 + Missense_Mutation SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd NUP210L 91181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154029322 154029322 + Missense_Mutation SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd OGDH 4967 broad.mit.edu;ucsc.edu 37 7 44733560 44733560 + Missense_Mutation SNP C A A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd PCLO 27445 broad.mit.edu;hgsc.bcm.edu 37 7 82474757 82474757 + Missense_Mutation SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd PDE4C 5143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18331077 18331077 + Missense_Mutation SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd PLEC 5339 broad.mit.edu;hgsc.bcm.edu 37 8 144996079 144996079 + Missense_Mutation SNP G G C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd POLE 5426 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 133233985 133233985 + Missense_Mutation SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd PTPRU 10076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29638000 29638000 + Missense_Mutation SNP C C G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd RABGAP1L 9910 hgsc.bcm.edu;ucsc.edu 37 1 174781011 174781011 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd RAPGEF2 9693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 160273880 160273880 + Missense_Mutation SNP T T A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd RBL2 5934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 53495738 53495738 + Nonsense_Mutation SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd RDH5 5959 broad.mit.edu;ucsc.edu 37 12 56115023 56115023 + Missense_Mutation SNP A G G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SGOL2 151246 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 201437495 201437495 + Missense_Mutation SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SIPA1L3 23094 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 38572298 38572298 + Silent SNP A A G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SLC12A2 6558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 127497486 127497486 + Missense_Mutation SNP G G C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SLC17A4 10050 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25779371 25779371 + Silent SNP A A T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SLC24A2 25769 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 19550217 19550217 + Missense_Mutation SNP T T A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SLC24A6 80024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113742186 113742186 + Silent SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SLC24A6 80024 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 113758188 113758188 + Missense_Mutation SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SLC24A6 80024 hgsc.bcm.edu;ucsc.edu 37 12 113742187 113742187 + Missense_Mutation SNP A A T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SLC30A9 10463 broad.mit.edu;hgsc.bcm.edu 37 4 42072678 42072678 + Missense_Mutation SNP C C G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd STK31 56164 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 23775341 23775341 + Missense_Mutation SNP A A T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19701513 19701513 + Missense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd TNFRSF9 3604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 7998781 7998781 + Missense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd TPR 7175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186327744 186327744 + Silent SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd TRAF5 7188 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 211545865 211545865 + Missense_Mutation SNP T T A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd UHRF1BP1 54887 hgsc.bcm.edu;ucsc.edu 37 6 34825920 34825921 + Frame_Shift_Del DEL AG AG - novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd WAPAL 23063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 88230845 88230845 + Silent SNP A A T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd WDFY3 23001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 85654653 85654653 + Missense_Mutation SNP T T A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd WDR1 9948 broad.mit.edu;ucsc.edu 37 4 10089380 10089380 + Frame_Shift_Del DEL A - - novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ZBTB7A 51341 broad.mit.edu;hgsc.bcm.edu 37 19 4048233 4048233 + Missense_Mutation SNP C C A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ZC3H13 23091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 46577388 46577388 + Missense_Mutation SNP C C T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ZNF211 10520 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58153167 58153167 + Missense_Mutation SNP C C G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ZSCAN1 284312 hgsc.bcm.edu 37 19 58551902 58551902 + Missense_Mutation SNP A A C novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ZNF800 168850 ucsc.edu 37 7 127031545 127031545 + Intron SNP G G T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G G T G G Unknown Valid Somatic . WXS PGM . . Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd ZNF800 168850 ucsc.edu 37 7 127031546 127031546 + Intron SNP T T A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T T A T T Unknown Valid Somatic . WXS PGM . . Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd VHL 7428 hgsc.bcm.edu 37 3 10183863 10183863 + Missense_Mutation SNP G G A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G G A G G Unknown Valid Somatic Phase_I WXS PGM . . Illumina HiSeq 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd BAT3 0 broad.mit.edu 37 6 31611899 31611899 + Missense_Mutation SNP C A A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd DNAH8 1769 broad.mit.edu 37 6 38889260 38889260 + Missense_Mutation SNP A T T rs147713611 alternate_allele TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd KRTAP4-8 728224 broad.mit.edu 37 17 39253956 39253956 + Silent SNP G A A rs76327324 byfrequency TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd LOC440040 440040 broad.mit.edu 37 11 49830092 49830092 + Missense_Mutation SNP G T T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd LOC440905 440905 broad.mit.edu 37 2 130785949 130785949 + RNA SNP C A A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd MIR1250 100302229 broad.mit.edu 37 17 79107042 79107042 + RNA SNP A T T novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd MIR544 0 broad.mit.edu 37 14 101515030 101515030 + RNA SNP T G G novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd RNASEN 0 broad.mit.edu 37 5 31423045 31423045 + Nonsense_Mutation SNP C A A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SETBP1 26040 broad.mit.edu 37 18 42532845 42532845 + Silent SNP C A A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd SLC38A8 146167 broad.mit.edu 37 16 84063144 84063144 + Missense_Mutation SNP C A A novel TCGA-CJ-4918-01A-01D-1429-08 TCGA-CJ-4918-11A-01D-1429-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2c5d4600-0271-4c03-ab44-239ac19d8b4d 80f9282a-cc37-4eb9-9b12-afac245fc8bd