Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AKT1S1 84335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50374936 50374936 + Silent SNP G G A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b BAT1 0 hgsc.bcm.edu 37 6 31504445 31504446 + Frame_Shift_Ins INS - - A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b BBOX1 8424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 27147298 27147298 + Missense_Mutation SNP G G T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b BBOX1 8424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 27147299 27147299 + Missense_Mutation SNP C C A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b C10orf18 0 broad.mit.edu;ucsc.edu 37 10 5789077 5789077 + Silent SNP A C C novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b C20orf186 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31690805 31690805 + Missense_Mutation SNP C C A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b CDH2 1000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 25583110 25583110 + Missense_Mutation SNP C C T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b CEP135 9662 broad.mit.edu;hgsc.bcm.edu 37 4 56825852 56825852 + Nonsense_Mutation SNP C C T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b CHD6 84181 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 40033900 40033900 + Missense_Mutation SNP C C T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b COL3A1 1281 hgsc.bcm.edu;ucsc.edu 37 2 189875056 189875056 + Frame_Shift_Del DEL G G - novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b CSMD1 64478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 2818703 2818703 + Missense_Mutation SNP G G T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b DTWD2 285605 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 118280326 118280326 + Silent SNP A A G novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b ESCO1 114799 hgsc.bcm.edu;ucsc.edu 37 18 19154328 19154329 + Frame_Shift_Ins INS - - T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b IDS 3423 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 148577954 148577954 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160465623 160465623 + Missense_Mutation SNP T T G novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b JMJD6 23210 broad.mit.edu;hgsc.bcm.edu 37 17 74721938 74721938 + Splice_Site SNP C C T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b LTBP2 4053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 74972836 74972836 + Silent SNP C C T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b MAT2A 4144 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 85768975 85768975 + Silent SNP T T C novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b NHP2L1 4809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42071041 42071041 + Missense_Mutation SNP C C T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b OR4D1 26689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56232813 56232813 + Missense_Mutation SNP A A G novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b OR5P2 120065 hgsc.bcm.edu 37 11 7818383 7818384 + In_Frame_Ins INS - - ATATGGTTACCAGGTAGATGC novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b PAF1 54623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39880362 39880362 + Missense_Mutation SNP G G C novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b POGK 57645 broad.mit.edu;hgsc.bcm.edu 37 1 166816822 166816822 + Silent SNP C C G novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b PRAMEF1 65121 broad.mit.edu;hgsc.bcm.edu 37 1 12854406 12854406 + Silent SNP G G A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b RNF40 9810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30777596 30777596 + Missense_Mutation SNP G G T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b SLC47A1 55244 broad.mit.edu;ucsc.edu 37 17 19470436 19470436 + Missense_Mutation SNP A G G novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b SPAG5 10615 hgsc.bcm.edu;ucsc.edu 37 17 26919284 26919284 + Frame_Shift_Del DEL T T - novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b TCOF1 6949 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149743741 149743741 + Missense_Mutation SNP G G T rs145365677 alternate_allele TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b TONSL 4796 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145666223 145666223 + Missense_Mutation SNP C C G novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b TRPM7 54822 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50891464 50891464 + Missense_Mutation SNP A A C novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b TSGA10IP 254187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 65714961 65714961 + Missense_Mutation SNP C C T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b UBE4A 9354 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118263549 118263549 + Missense_Mutation SNP G G C novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b UBN2 254048 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138958746 138958746 + Silent SNP T T A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b USP50 373509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 50835798 50835798 + Missense_Mutation SNP T T A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b WNT3A 89780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 228246774 228246774 + Missense_Mutation SNP G G T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b CDRT15P 0 broad.mit.edu 37 17 13927900 13927900 + RNA SNP T C C novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b COL7A1 1294 broad.mit.edu 37 3 48609479 48609479 + Splice_Site SNP C T T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b CROCCL2 0 broad.mit.edu 37 1 16812113 16812113 + RNA SNP G A A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b DNAH5 1767 broad.mit.edu 37 5 13708443 13708443 + Missense_Mutation SNP A C C novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b FBLN7 129804 broad.mit.edu 37 2 112896287 112896287 + Missense_Mutation SNP C A A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b LOC441666 441666 broad.mit.edu 37 10 42832147 42832147 + RNA SNP G T T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b LOC650368 650368 broad.mit.edu 37 11 3427845 3427845 + RNA SNP C T T novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b PSME4 23198 broad.mit.edu 37 2 54176396 54176396 + Missense_Mutation SNP T A A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b Unknown 0 broad.mit.edu 37 22 18846113 18846113 + RNA SNP C T T rs75891150 TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b WASH3P 374666 broad.mit.edu 37 15 102515299 102515299 + Missense_Mutation SNP G A A novel TCGA-CJ-4899-01A-01D-1462-08 TCGA-CJ-4899-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 943ca428-39f6-4ad2-8ca5-220628a6b5bb 2fa78925-1a3a-488c-944f-9ecab35bcd5b