Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ATG16L1 55054 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234178666 234178666 + Silent SNP G G T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 ATMIN 23300 hgsc.bcm.edu 37 16 81069751 81069751 + Silent SNP C C G rs150799758 byfrequency TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 C11orf30 56946 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 76261122 76261122 + Missense_Mutation SNP G G A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 C20orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 61574871 61574871 + Missense_Mutation SNP C C T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 CEP170 9859 hgsc.bcm.edu 37 1 243328392 243328393 + Frame_Shift_Del DEL TT TT - novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 TT TT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 CHAD 1101 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48543170 48543170 + Missense_Mutation SNP C C T rs142146358 TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 CHD4 1108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6701634 6701634 + Missense_Mutation SNP A A T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 DDX50 79009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70695795 70695795 + Missense_Mutation SNP A A G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 DNAH11 8701 broad.mit.edu;hgsc.bcm.edu 37 7 21639512 21639512 + Silent SNP C C T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 EIF4G3 8672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 21133885 21133885 + Missense_Mutation SNP C C T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 FCRL5 83416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157494128 157494128 + Missense_Mutation SNP C C T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 FLRT2 23768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 86088842 86088842 + Silent SNP C C T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 GAS2L3 283431 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 101017385 101017385 + Missense_Mutation SNP G G A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 GCN1L1 10985 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 120622633 120622633 + Missense_Mutation SNP C C T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 GUCY1B3 2983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 156723600 156723600 + Missense_Mutation SNP G G A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 IL1RL1 9173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 102956734 102956734 + Splice_Site SNP T T G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 ITIH3 3699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52842629 52842629 + Missense_Mutation SNP G G A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 KCNH7 90134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 163279898 163279898 + Missense_Mutation SNP T T G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 KIAA0196 9897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 126075842 126075842 + Missense_Mutation SNP T T C novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 LAMA4 3910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112513053 112513053 + Splice_Site SNP C C G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11227530 11227530 + Missense_Mutation SNP A A G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 MYNN 55892 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 169502437 169502437 + Missense_Mutation SNP G G T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 PCBP2 5094 broad.mit.edu;hgsc.bcm.edu 37 12 53853119 53853119 + Missense_Mutation SNP G G A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 PCDHGA2 56113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140718869 140718869 + Nonsense_Mutation SNP G G T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 PLEKHG2 64857 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 39915872 39915872 + Missense_Mutation SNP A A G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 PLEKHH2 130271 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 43973091 43973091 + Silent SNP A A T novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 PTCH1 5727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 98209386 98209386 + Silent SNP C C G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 RNF113A 7737 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119004755 119004755 + Silent SNP G G A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 SATB2 23314 broad.mit.edu;hgsc.bcm.edu 37 2 200193631 200193631 + Silent SNP T T A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 SDCCAG8 10806 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 243581287 243581287 + Silent SNP T T C novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 SH3BP2 6452 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 2833702 2833702 + Missense_Mutation SNP A A G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 SKI 6497 broad.mit.edu;hgsc.bcm.edu 37 1 2234822 2234822 + Silent SNP G G A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 SLCO1A2 6579 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21454187 21454187 + Silent SNP T T A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 SPTA1 6708 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158582607 158582607 + Missense_Mutation SNP C C A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 TRADD 8717 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67190505 67190505 + Missense_Mutation SNP T T C novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 WAC 51322 hgsc.bcm.edu;ucsc.edu 37 10 28878756 28878756 + Frame_Shift_Del DEL A A - novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 ZNF280B 140883 hgsc.bcm.edu 37 22 22842518 22842518 + Silent SNP G G A rs73156173 bycluster;byfrequency TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 ZNF880 400713 hgsc.bcm.edu 37 19 52888050 52888050 + Missense_Mutation SNP A A G rs76053634 byfrequency TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 GRIN3B 116444 broad.mit.edu 37 19 1003373 1003374 + Frame_Shift_Ins INS - G G novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 PTPRS 5802 broad.mit.edu 37 19 5231368 5231368 + Missense_Mutation SNP C A A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802 VWA2 340706 broad.mit.edu 37 10 116045700 116045700 + Missense_Mutation SNP C A A novel TCGA-BP-5001-01A-01D-1462-08 TCGA-BP-5001-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 35f1f66f-e018-489c-915f-a12d7a15dc72 f3051a5d-409a-44db-8ad3-2cf4b12da802