Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AASDH 132949 broad.mit.edu;hgsc.bcm.edu 37 4 57204599 57204599 + Missense_Mutation SNP C C T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 ADAM15 8751 hgsc.bcm.edu;ucsc.edu 37 1 155028946 155028946 + Missense_Mutation SNP G G A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 ADCY4 196883 broad.mit.edu;hgsc.bcm.edu 37 14 24801009 24801009 + Silent SNP G G C rs146843899 byfrequency;alternate_allele TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 AGBL1 123624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 86940775 86940775 + Silent SNP C C T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 AHNAK 79026 broad.mit.edu;hgsc.bcm.edu 37 11 62288165 62288165 + Missense_Mutation SNP T T G novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 ANKRD20A4 728747 hgsc.bcm.edu 37 9 69393857 69393860 + Frame_Shift_Del DEL TACT TACT - novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 TACT TACT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 BCORL1 63035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 129146951 129146951 + Missense_Mutation SNP G G C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 C2CD3 26005 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 73825591 73825591 + Missense_Mutation SNP T T C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 C7orf29 113763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 150027696 150027696 + Missense_Mutation SNP G G A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 C8orf34 116328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 69351861 69351861 + Nonsense_Mutation SNP G G A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 CDCP2 200008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54605450 54605450 + Missense_Mutation SNP C C T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 CLYBL 171425 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 100511253 100511253 + Missense_Mutation SNP C C A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 COL6A2 1292 broad.mit.edu;hgsc.bcm.edu 37 21 47531392 47531392 + Missense_Mutation SNP T T C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 DNAH11 8701 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 21789334 21789334 + Missense_Mutation SNP G G C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 EMILIN3 90187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39990048 39990048 + Silent SNP T T G novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 FBXL19 54620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30939867 30939867 + Missense_Mutation SNP C C T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 HTT 3064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 3208255 3208255 + Silent SNP G G T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 IPO11 51194 broad.mit.edu;ucsc.edu 37 5 61779841 61779841 + Silent SNP C T T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 KDM5C 8242 broad.mit.edu;hgsc.bcm.edu 37 X 53227751 53227751 + Nonsense_Mutation SNP G G A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 LBR 3930 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 225599096 225599096 + Silent SNP T T A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 MIR30C1 407031 hgsc.bcm.edu 37 1 41222991 41222991 + RNA SNP C C G novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 MYST1 0 broad.mit.edu;hgsc.bcm.edu 37 16 31141808 31141808 + Silent SNP C C T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 NDFIP2 54602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 80094986 80094986 + Silent SNP G G A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152548582 152548582 + Silent SNP T T C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 PCDHB7 56129 broad.mit.edu;hgsc.bcm.edu 37 5 140553992 140553992 + Missense_Mutation SNP G G T rs146429251 byfrequency;alternate_allele TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 PHF1 5252 hgsc.bcm.edu;ucsc.edu 37 6 33382506 33382507 + Frame_Shift_Ins INS - - T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 PRIM2 5558 broad.mit.edu;hgsc.bcm.edu 37 6 57498975 57498975 + Silent SNP T T C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 RAMP1 10267 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238820196 238820196 + Missense_Mutation SNP C C T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 RNF123 63891 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49734822 49734822 + Missense_Mutation SNP T T C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 RNPEP 6051 hgsc.bcm.edu;ucsc.edu 37 1 201970845 201970845 + Frame_Shift_Del DEL A A - novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 RPL4 6124 hgsc.bcm.edu 37 15 66791809 66791809 + Missense_Mutation SNP G G A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 RUSC1 23623 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155291906 155291906 + Silent SNP C C A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 SLC22A12 116085 broad.mit.edu;hgsc.bcm.edu 37 11 64360346 64360346 + Silent SNP C C A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 SPAG17 200162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 118581935 118581935 + Missense_Mutation SNP T T G novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 SSPO 23145 hgsc.bcm.edu 37 7 149476666 149476667 + Frame_Shift_Ins INS - - C rs111343201 bycluster;by1000genomes TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 TATDN1 83940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125500921 125500921 + Missense_Mutation SNP T T C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 TMED2 10959 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124069276 124069276 + Silent SNP G G A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 TTC24 164118 hgsc.bcm.edu 37 1 156553232 156553232 + Frame_Shift_Del DEL C C - rs140853435 by1000genomes TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179643760 179643760 + Missense_Mutation SNP C C T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 UGT1A6 54578 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234602164 234602164 + Missense_Mutation SNP A A G novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 UPF2 26019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 12009405 12009405 + Missense_Mutation SNP G G T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 ZNF257 113835 broad.mit.edu;hgsc.bcm.edu 37 19 22271484 22271484 + Missense_Mutation SNP C C T novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 ZNF528 84436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52918813 52918813 + Silent SNP T T C novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 C6orf153 0 broad.mit.edu 37 6 42989414 42989419 + In_Frame_Del DEL GCCGGG - - rs3833662 TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 GCCGGG GCCGGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 KIAA0913 0 broad.mit.edu 37 10 75551975 75551975 + Missense_Mutation SNP C A A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 PRSS50 29122 broad.mit.edu 37 3 46753884 46753884 + Missense_Mutation SNP C A A novel TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 SAMD11 148398 broad.mit.edu 37 1 878409 878409 + Missense_Mutation SNP C T T rs181205550 by1000genomes TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36 WASH2P 375260 broad.mit.edu 37 2 114355998 114355998 + Missense_Mutation SNP C G G rs17857355 byfrequency TCGA-BP-5000-01A-01D-1462-08 TCGA-BP-5000-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx b9816eaa-3c60-4fbf-abd6-6d869ca9cca7 ec0ff7f5-675f-4168-85f8-edf28a5d2e36