Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA1 19 broad.mit.edu;hgsc.bcm.edu 37 9 107558674 107558674 + Missense_Mutation SNP A A C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 ACE 1636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 61555382 61555382 + Missense_Mutation SNP G G A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 AQP12A 375318 broad.mit.edu;hgsc.bcm.edu 37 2 241631411 241631411 + Silent SNP C C A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 ATP6V0A4 50617 broad.mit.edu;hgsc.bcm.edu 37 7 138417644 138417644 + Missense_Mutation SNP T T C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 BNC1 646 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83935682 83935682 + Missense_Mutation SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13604991 13604991 + Missense_Mutation SNP G G C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 BOD1L 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 13604992 13604992 + Missense_Mutation SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 BTG1 694 hgsc.bcm.edu;ucsc.edu 37 12 92539248 92539249 + Frame_Shift_Ins INS - - G novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 BZW1 9689 broad.mit.edu;hgsc.bcm.edu 37 2 201682967 201682967 + Missense_Mutation SNP C C G novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 C19orf55 148137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 36258775 36258775 + Missense_Mutation SNP C C A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 C7orf25 79020 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 42949681 42949681 + Silent SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 CDC16 8881 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 115007656 115007656 + Missense_Mutation SNP C C A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 FAM134B 54463 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 16475310 16475310 + Missense_Mutation SNP C C A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 FBLN1 2192 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45960802 45960802 + Missense_Mutation SNP G G A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 INPP5A 3632 broad.mit.edu;ucsc.edu 37 10 134523924 134523924 + Missense_Mutation SNP G A A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 ITPRIPL1 150771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 96993809 96993809 + Silent SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 JAK3 3718 hgsc.bcm.edu 37 19 17954641 17954642 + Frame_Shift_Ins INS - - C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 KIAA0664 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2596082 2596082 + Nonsense_Mutation SNP G G A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 KIAA1033 23325 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 105538583 105538583 + Missense_Mutation SNP A A C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 MMP25 64386 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 3100517 3100517 + Missense_Mutation SNP G G A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 MTAP 4507 broad.mit.edu;hgsc.bcm.edu 37 9 21818193 21818193 + Missense_Mutation SNP C C G novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 MYL5 4636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 674308 674308 + Silent SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 MYO1F 4542 broad.mit.edu;hgsc.bcm.edu 37 19 8606866 8606866 + Missense_Mutation SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 MYOM3 127294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24419478 24419478 + Missense_Mutation SNP G G A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 NOD2 64127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50733767 50733767 + Missense_Mutation SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 PCDHA12 56137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140257019 140257019 + Silent SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 PDIA6 10130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10931989 10931989 + Missense_Mutation SNP C C G novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 PEAK1 79834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77406695 77406695 + Missense_Mutation SNP G G A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 PNKP 11284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50364761 50364761 + Missense_Mutation SNP C C G novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 PRSS37 136242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 141540818 141540818 + Missense_Mutation SNP G G A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 RHEB 6009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151188050 151188050 + Missense_Mutation SNP A A T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 RNF130 55819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 179382657 179382657 + Silent SNP A A G novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 SH3RF3 344558 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 110053415 110053415 + Silent SNP G G T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 SLC13A3 64849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 45239178 45239178 + Missense_Mutation SNP T T C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11143976 11143976 + Missense_Mutation SNP C C G novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 TAF1B 9014 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 10051037 10051037 + Silent SNP C C T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 WAC 51322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 28906668 28906668 + Missense_Mutation SNP C C A novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 ZNF407 55628 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 72346181 72346181 + Missense_Mutation SNP A A C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 ZNF473 25888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50550275 50550275 + Missense_Mutation SNP C C G novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 FKBP15 23307 broad.mit.edu 37 9 115973865 115973865 + Missense_Mutation SNP A C C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 KCNN1 3780 broad.mit.edu 37 19 18104303 18104303 + Missense_Mutation SNP C T T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 MICALCL 84953 broad.mit.edu 37 11 12316358 12316358 + Silent SNP T C C novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 MIR515-1 574462 broad.mit.edu 37 19 54182305 54182305 + RNA SNP C T T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431 TET3 200424 broad.mit.edu 37 2 74328533 74328533 + Missense_Mutation SNP G T T novel TCGA-BP-4992-01A-01D-1462-08 TCGA-BP-4992-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 39df0e80-84d8-4ed8-9273-4743b14ee408 576f56ed-b2c7-4c79-ab0a-5bdc6b472431