Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AMOTL1 154810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 94554897 94554897 + Silent SNP C C G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ANKIB1 54467 hgsc.bcm.edu;ucsc.edu 37 7 91974300 91974310 + Frame_Shift_Del DEL TTGTATGTGCA TTGTATGTGCA - novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 TTGTATGTGCA TTGTATGTGCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ANKRD20A3 441425 hgsc.bcm.edu 37 9 42380186 42380189 + Frame_Shift_Del DEL TACT TACT - novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 TACT TACT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ARHGAP30 257106 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161039395 161039395 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ASPM 259266 hgsc.bcm.edu;ucsc.edu 37 1 197072929 197072929 + Missense_Mutation SNP G G A rs41299625 bycluster;byfrequency;by1000genomes TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ATM 472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108236074 108236074 + Missense_Mutation SNP A A G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf BEST3 144453 hgsc.bcm.edu 37 12 70088220 70088220 + Frame_Shift_Del DEL T T - novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf BRD7 29117 broad.mit.edu;hgsc.bcm.edu 37 16 50402667 50402667 + Missense_Mutation SNP T T C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf C15orf41 84529 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 36984363 36984363 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf C7orf51 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100085830 100085830 + Silent SNP G G A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf CCDC50 152137 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 191087771 191087771 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf CHN1 1123 broad.mit.edu;hgsc.bcm.edu 37 2 175742574 175742574 + Missense_Mutation SNP C C A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf CLSPN 63967 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 36230877 36230877 + Missense_Mutation SNP A A C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf CNTNAP4 85445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 76481968 76481968 + Missense_Mutation SNP T T C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf COL6A3 1293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 238277415 238277415 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf CORO2A 7464 hgsc.bcm.edu 37 9 100919886 100919887 + Frame_Shift_Ins INS - - G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf CRIPAK 285464 broad.mit.edu;hgsc.bcm.edu 37 4 1389122 1389122 + Nonsense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf DCAF8L1 139425 broad.mit.edu;hgsc.bcm.edu 37 X 27998267 27998267 + Silent SNP G G A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf DENND4A 10260 broad.mit.edu;hgsc.bcm.edu 37 15 65957783 65957783 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf DKC1 1736 hgsc.bcm.edu 37 X 154005088 154005089 + In_Frame_Ins INS - - AAG novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf EGF 1950 hgsc.bcm.edu 37 4 110865129 110865130 + Frame_Shift_Ins INS - - G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf EIF2C2 27161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141549418 141549418 + Splice_Site SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf EIF2C2 27161 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 141566069 141566069 + Missense_Mutation SNP T T C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf EPHX2 2053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 27362496 27362496 + Missense_Mutation SNP A A T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf F2RL1 2150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 76128711 76128711 + Silent SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf FAM120A 23196 broad.mit.edu;hgsc.bcm.edu 37 9 96214409 96214409 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf FRMD4A 55691 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 13702514 13702514 + Missense_Mutation SNP G G A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf GRM5 2915 broad.mit.edu;hgsc.bcm.edu 37 11 88780709 88780709 + Missense_Mutation SNP T T G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf HECTD3 79654 broad.mit.edu;hgsc.bcm.edu 37 1 45476654 45476654 + Silent SNP G G C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf HUS1 3364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48015247 48015247 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf INCENP 3619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61897891 61897891 + Missense_Mutation SNP A A T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf INCENP 3619 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 61897892 61897892 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf KIAA0319 9856 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 24569057 24569057 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf KIAA1409 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 94088745 94088745 + Silent SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf KRTAP10-5 386680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 46000020 46000020 + Missense_Mutation SNP A A G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf LMLN 89782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 197707203 197707203 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf LOXL2 4017 broad.mit.edu;hgsc.bcm.edu 37 8 23167334 23167334 + Missense_Mutation SNP T T G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf LRP1 4035 broad.mit.edu;hgsc.bcm.edu 37 12 57588284 57588284 + Missense_Mutation SNP C C A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ME3 10873 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 86159278 86159278 + Missense_Mutation SNP T T C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf MLL2 8085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49443747 49443747 + Silent SNP G G A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf MRPL1 65008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 78792972 78792972 + Missense_Mutation SNP A A T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf MRPL51 51258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6602132 6602132 + Missense_Mutation SNP G G C rs11559083 bycluster;alternate_allele TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf MRPL51 51258 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6602137 6602137 + Silent SNP A A C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf MSL2 55167 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 135913893 135913893 + Silent SNP G G A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf MUC16 94025 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 9066807 9066807 + Missense_Mutation SNP A A T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf MUM1L1 139221 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 105450813 105450813 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf MYNN 55892 broad.mit.edu;ucsc.edu 37 3 169496987 169496987 + Missense_Mutation SNP C T T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf NDUFS5 4725 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 39494463 39494463 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117710301 117710301 + Silent SNP G G C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf OTUD3 23252 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20224088 20224088 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf PARVA 55742 broad.mit.edu;hgsc.bcm.edu 37 11 12518075 12518075 + Silent SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf PBRM1 55193 broad.mit.edu;hgsc.bcm.edu 37 3 52651293 52651293 + Missense_Mutation SNP A A C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf PCNT 5116 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 47841950 47841950 + Missense_Mutation SNP G G C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf PIGV 55650 hgsc.bcm.edu;ucsc.edu 37 1 27121228 27121228 + Frame_Shift_Del DEL T T - novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf PLEKHH1 57475 broad.mit.edu;hgsc.bcm.edu 37 14 68038960 68038960 + Nonsense_Mutation SNP C C A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf PSMA3 5684 hgsc.bcm.edu 37 14 58724704 58724705 + Frame_Shift_Ins INS - - T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf PTGS2 5743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 186645102 186645102 + Nonsense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf RALGPS2 55103 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 178852665 178852665 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf RANBP3L 202151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 36257042 36257042 + Splice_Site SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf RIMBP3 85376 hgsc.bcm.edu 37 22 20460113 20460115 + In_Frame_Del DEL CCG CCG - rs77846076 alternate_allele TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 CCG CCG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SCN1A 6323 hgsc.bcm.edu;ucsc.edu 37 2 166848925 166848925 + Frame_Shift_Del DEL A A - novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SEC14L2 23541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 30805428 30805428 + Missense_Mutation SNP T T A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SEMA4F 10505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 74907017 74907017 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SEMG1 6406 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 43837138 43837138 + Silent SNP T T C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SKIL 6498 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 170078221 170078221 + Silent SNP G G A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SLC27A6 28965 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 128351731 128351731 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SLC9A5 6553 broad.mit.edu;hgsc.bcm.edu 37 16 67290903 67290903 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11144146 11144146 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SPECC1 92521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 20150580 20150580 + Missense_Mutation SNP T T A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf SVEP1 79987 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 113168633 113168633 + Frame_Shift_Del DEL C C - novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf TAS1R3 83756 broad.mit.edu;hgsc.bcm.edu 37 1 1268364 1268364 + Missense_Mutation SNP A A G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf TMEM140 55281 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134849219 134849219 + Missense_Mutation SNP G G A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf TMEM213 155006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138487680 138487680 + Missense_Mutation SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf TSSK4 283629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24675911 24675911 + Missense_Mutation SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf TTN 7273 broad.mit.edu;hgsc.bcm.edu 37 2 179572409 179572409 + Missense_Mutation SNP C C G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf TUSC1 286319 broad.mit.edu;hgsc.bcm.edu 37 9 25677810 25677810 + Silent SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf UBR4 23352 broad.mit.edu;hgsc.bcm.edu 37 1 19480421 19480421 + Silent SNP G G T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf UTP6 55813 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 30213014 30213014 + Missense_Mutation SNP C C G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf VHL 7428 broad.mit.edu;ucsc.edu 37 3 10183763 10183763 + Missense_Mutation SNP A G G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf XIST 7503 broad.mit.edu;hgsc.bcm.edu 37 X 73063111 73063111 + RNA SNP A A G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZNF326 284695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 90475839 90475839 + Missense_Mutation SNP T T G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZNF572 137209 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 125989480 125989480 + Missense_Mutation SNP G G A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZNF574 64763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42582777 42582777 + Missense_Mutation SNP G G C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZNF721 170960 broad.mit.edu;hgsc.bcm.edu 37 4 436954 436954 + Missense_Mutation SNP T T G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZNF79 7633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130207059 130207059 + Silent SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZNF79 7633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 130207060 130207060 + Missense_Mutation SNP T T C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZNF878 729747 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12155240 12155240 + Missense_Mutation SNP A A T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3921211 3921211 + Silent SNP C C T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZZEF1 23140 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4005690 4005690 + Silent SNP A A G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf AGFG2 3268 broad.mit.edu 37 7 100137100 100137101 + Frame_Shift_Ins INS - C C novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf AVIL 10677 broad.mit.edu 37 12 58204236 58204236 + Silent SNP C T T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf CPO 130749 broad.mit.edu 37 2 207820279 207820279 + Nonsense_Mutation SNP T A A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf DOCK5 80005 broad.mit.edu 37 8 25158135 25158135 + Nonsense_Mutation SNP G T T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf GOLGA6L5 374650 broad.mit.edu 37 15 85056021 85056021 + RNA SNP T C C rs1062001 TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ITSN2 50618 broad.mit.edu 37 2 24524884 24524884 + Silent SNP T G G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf NBPF22P 285622 broad.mit.edu 37 5 85578601 85578601 + Missense_Mutation SNP C A A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf PLXNA4 91584 broad.mit.edu 37 7 132193205 132193205 + Missense_Mutation SNP G A A novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf POLR3B 55703 broad.mit.edu 37 12 106820975 106820975 + Missense_Mutation SNP C T T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf WNT5B 81029 broad.mit.edu 37 12 1748873 1748873 + Missense_Mutation SNP C T T novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf ZNF322A 0 broad.mit.edu 37 6 26638479 26638479 + Silent SNP A G G novel TCGA-BP-4964-01A-01D-1462-08 TCGA-BP-4964-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 5b838251-67f5-4e22-a291-8a9e206d56db 30a80165-2c9b-4170-9907-275a227b32bf