Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA7 10347 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 1051287 1051287 + Missense_Mutation SNP C C G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ACTN1 87 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 69349271 69349271 + Silent SNP C C G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ADAMTS9 56999 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 64589693 64589693 + Missense_Mutation SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ADHFE1 137872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 67357547 67357547 + Frame_Shift_Del DEL A A - novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ALMS1 7840 hgsc.bcm.edu;ucsc.edu 37 2 73717436 73717437 + Frame_Shift_Ins INS - - A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ASB3 51130 hgsc.bcm.edu;ucsc.edu 37 2 53956692 53956697 + In_Frame_Del DEL TGTCCA TGTCCA - novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 TGTCCA TGTCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ATAD1 84896 broad.mit.edu;hgsc.bcm.edu 37 10 89550085 89550085 + Missense_Mutation SNP G G T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ATP8A2 51761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 26104186 26104186 + Missense_Mutation SNP C C G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef BTBD7 55727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93709191 93709191 + Missense_Mutation SNP G G C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef CEACAM4 1089 hgsc.bcm.edu;ucsc.edu 37 19 42132122 42132123 + Frame_Shift_Del DEL CC CC - novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 CC CC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef COL1A2 1278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94059617 94059617 + Missense_Mutation SNP G G A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef CPEB4 80315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 173372085 173372085 + Silent SNP A A G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef CTNND1 1500 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57563067 57563067 + Missense_Mutation SNP T T G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef FHOD1 29109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 67264329 67264329 + Missense_Mutation SNP A A G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef GCNT1 2650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79118325 79118325 + Missense_Mutation SNP A A G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef GPC4 2239 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132437029 132437029 + Missense_Mutation SNP A A C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef GPR98 84059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89941846 89941846 + Missense_Mutation SNP T T G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef GPX8 493869 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 54456928 54456928 + Missense_Mutation SNP T T G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef HDGFL1 154150 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 22569865 22569865 + Missense_Mutation SNP G G T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef HSPB11 51668 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54405733 54405733 + Missense_Mutation SNP A A T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef HTR3A 3359 hgsc.bcm.edu;ucsc.edu 37 11 113857420 113857420 + Missense_Mutation SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ISL1 3670 hgsc.bcm.edu 37 5 50685624 50685624 + Missense_Mutation SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ITGA11 22801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 68596122 68596122 + Silent SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef KHNYN 23351 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24901665 24901665 + Missense_Mutation SNP T T A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef KIF20B 9585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 91528517 91528517 + Missense_Mutation SNP A A C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef LAMA4 3910 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 112471821 112471821 + Missense_Mutation SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef LASS4 0 hgsc.bcm.edu;ucsc.edu 37 19 8322833 8322835 + In_Frame_Del DEL TCT TCT - novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 TCT TCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef LPHN2 23266 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 82408996 82408996 + Silent SNP T T C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef LRIG2 9860 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113657274 113657274 + Missense_Mutation SNP C C G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef LRRIQ3 127255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 74575231 74575231 + Silent SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef MAST3 23031 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18254635 18254635 + Missense_Mutation SNP G G T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef MBOAT2 129642 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9048798 9048798 + Silent SNP A A C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef MCM4 4173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48874107 48874107 + Silent SNP T T A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef NEK11 79858 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 130748629 130748629 + Missense_Mutation SNP C C G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef NLRP6 171389 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 281411 281411 + Silent SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef NOL11 25926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 65730487 65730487 + Missense_Mutation SNP T T A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef NOS2 4843 broad.mit.edu;hgsc.bcm.edu 37 17 26086097 26086097 + Missense_Mutation SNP T T C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef NRXN2 9379 hgsc.bcm.edu;ucsc.edu 37 11 64428577 64428577 + Missense_Mutation SNP G G C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef NUP133 55746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 229641823 229641823 + Missense_Mutation SNP G G T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef NYNRIN 57523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24885951 24885951 + Missense_Mutation SNP C C A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef OR6K2 81448 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 158670021 158670021 + Missense_Mutation SNP G G T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef OXCT1 5019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 41794778 41794778 + Splice_Site SNP C C G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PARD6B 84612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49367004 49367004 + Silent SNP T T C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52649377 52649377 + Frame_Shift_Del DEL T T - novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T T - T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PCDHA9 9752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140230065 140230065 + Missense_Mutation SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PGLYRP2 114770 broad.mit.edu;hgsc.bcm.edu 37 19 15586606 15586606 + Missense_Mutation SNP G G A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PGM2 55276 hgsc.bcm.edu;ucsc.edu 37 4 37845989 37845989 + Missense_Mutation SNP G G A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PIK3CA 5290 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A T rs121913279 bycluster TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PLG 5340 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 161139402 161139402 + Silent SNP T T A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PPM1J 333926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 113255367 113255367 + Missense_Mutation SNP A A G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PRKCG 5582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 54395811 54395811 + Nonsense_Mutation SNP G G A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef PRRC2C 23215 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171560943 171560943 + Missense_Mutation SNP C C A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef RCVRN 5957 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 9808162 9808162 + Silent SNP G G A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef SEC31A 22872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83770070 83770070 + Missense_Mutation SNP G G T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef SEPN1 57190 hgsc.bcm.edu;ucsc.edu 37 1 26136292 26136293 + Frame_Shift_Del DEL CT CT - novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef SLC1A1 6505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 4576614 4576614 + Missense_Mutation SNP C C G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef SNX14 57231 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 86258079 86258079 + Silent SNP A A T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef STRA8 346673 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 134928142 134928142 + Silent SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TBX19 9095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 168260459 168260459 + Missense_Mutation SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TLN2 83660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 63125718 63125718 + Missense_Mutation SNP C C A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TMEM144 55314 hgsc.bcm.edu 37 4 159138559 159138560 + Frame_Shift_Ins INS - - G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TNKS1BP1 85456 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 57068043 57068043 + Missense_Mutation SNP C C A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TNR 7143 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 175365838 175365838 + Missense_Mutation SNP G G A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TRIM65 201292 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73888859 73888859 + Missense_Mutation SNP G G A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TRPM3 80036 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 73477850 73477850 + Nonsense_Mutation SNP C C A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef UBR5 51366 hgsc.bcm.edu 37 8 103307655 103307656 + Frame_Shift_Ins INS - - G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef UHRF1 29128 broad.mit.edu;hgsc.bcm.edu 37 19 4954476 4954476 + Missense_Mutation SNP G G T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191480 10191480 + Missense_Mutation SNP T T C rs121913346 alternate_allele TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ZDHHC8 29801 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 20130731 20130731 + Missense_Mutation SNP C C A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ZNF395 55893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 28214212 28214212 + Silent SNP A A G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ZNF594 84622 broad.mit.edu;hgsc.bcm.edu 37 17 5086351 5086351 + Missense_Mutation SNP C C T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ZWILCH 55055 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 66797733 66797733 + RNA SNP A A C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef ATP8B5P 158381 broad.mit.edu 37 9 35450233 35450233 + RNA SNP A T T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef C2CD2 25966 broad.mit.edu 37 21 43338331 43338331 + Missense_Mutation SNP C A A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef FAM136B 0 broad.mit.edu 37 6 3045892 3045892 + Missense_Mutation SNP A G G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef LOC96610 96610 broad.mit.edu 37 22 23006960 23006960 + RNA SNP C A A novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef LOC96610 96610 broad.mit.edu 37 22 23006961 23006961 + RNA SNP C T T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef LSS 4047 broad.mit.edu 37 21 47629493 47629493 + Missense_Mutation SNP G C C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef NCRNA00164 0 broad.mit.edu 37 2 132912341 132912341 + RNA SNP C T T novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TMEM231 79583 broad.mit.edu 37 16 75590097 75590097 + Missense_Mutation SNP T G G novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef TNNT1 7138 broad.mit.edu 37 19 55645564 55645564 + Missense_Mutation SNP G C C novel TCGA-BP-4960-01A-01D-1462-08 TCGA-BP-4960-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 36d21be3-2f46-47af-84aa-2305f2513aa1 3bcb9c19-2edf-45a0-8889-6b066351e8ef