Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAMTS13 11093 broad.mit.edu;hgsc.bcm.edu 37 9 136313849 136313849 + Missense_Mutation SNP G G C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e AKNA 80709 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 117139683 117139683 + Missense_Mutation SNP T T A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e AMPH 273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 38429478 38429478 + Missense_Mutation SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e ARHGAP10 79658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 148861022 148861022 + Missense_Mutation SNP G G C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e ASB16 92591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42249679 42249679 + Silent SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e ATG2A 23130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64676580 64676580 + Missense_Mutation SNP C C G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e ATP2A2 488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 110783864 110783864 + Missense_Mutation SNP G G C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e ATP8B2 57198 hgsc.bcm.edu 37 1 154316516 154316516 + Missense_Mutation SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e BRCA2 675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 32906553 32906553 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e BRD1 23774 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 50191673 50191673 + Missense_Mutation SNP C C G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e CACNA1A 773 hgsc.bcm.edu;ucsc.edu 37 19 13566012 13566013 + Frame_Shift_Del DEL AT AT - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 AT AT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e CECR1 51816 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17672628 17672628 + Missense_Mutation SNP A A C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e COPE 11316 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19014155 19014155 + Silent SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e CRYGS 1427 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 186256604 186256604 + Missense_Mutation SNP A A T novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e DCT 1638 hgsc.bcm.edu;ucsc.edu 37 13 95092164 95092165 + Frame_Shift_Del DEL TG TG - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 TG TG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e DOCK8 81704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 304680 304680 + Silent SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e DSCAML1 57453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 117332278 117332278 + Silent SNP C C G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56500387 56500387 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e EDEM2 55741 broad.mit.edu;hgsc.bcm.edu 37 20 33703674 33703674 + Silent SNP A A C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e EWSR1 2130 broad.mit.edu;hgsc.bcm.edu 37 22 29686417 29686417 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e FAM135B 51059 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 139165076 139165076 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e FAM5C 339479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 190067930 190067930 + Nonsense_Mutation SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e FES 2242 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 91430480 91430480 + Missense_Mutation SNP A A G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e FHL5 9457 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 97063550 97063550 + Missense_Mutation SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e G6PD 2539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153762612 153762612 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e GEN1 348654 hgsc.bcm.edu 37 2 17946312 17946312 + Frame_Shift_Del DEL T T - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e GPR183 1880 hgsc.bcm.edu;ucsc.edu 37 13 99947650 99947652 + In_Frame_Del DEL AAT AAT - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 AAT AAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e GPRC5B 51704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 19883415 19883415 + Missense_Mutation SNP C C T novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e HCFC2 29915 hgsc.bcm.edu;ucsc.edu 37 12 104476286 104476286 + Frame_Shift_Del DEL T T - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e HIST1H2AH 85235 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 27115055 27115055 + Missense_Mutation SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e HTR7 3363 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 92617162 92617162 + Silent SNP C C G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e IL21R 50615 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 27460474 27460474 + Missense_Mutation SNP G G T novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e IWS1 55677 broad.mit.edu;ucsc.edu 37 2 128262532 128262532 + Missense_Mutation SNP T A A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e IWS1 55677 broad.mit.edu;ucsc.edu 37 2 128262533 128262533 + Nonsense_Mutation SNP C A A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e KIAA1755 85449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 36869596 36869596 + Nonsense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e LMAN1 3998 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 57013225 57013225 + Missense_Mutation SNP T T C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e LRRC42 115353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54433413 54433413 + Missense_Mutation SNP T T A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e MAP2K3 5606 hgsc.bcm.edu 37 17 21203907 21203907 + Silent SNP T T C rs73311539 bycluster;byfrequency TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e MIS12 79003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 5392574 5392574 + Missense_Mutation SNP A A C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e MRGPRD 116512 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68747868 68747868 + Silent SNP C C G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e MRO 83876 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 48335764 48335764 + Missense_Mutation SNP G G T novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e NCOA2 10499 hgsc.bcm.edu;ucsc.edu 37 8 71069452 71069452 + Frame_Shift_Del DEL T T - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e NFXL1 152518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 47880552 47880552 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e NSUN5P2 260294 hgsc.bcm.edu;ucsc.edu 37 7 72419464 72419464 + RNA SNP T T G rs71256641 TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e PBRM1 55193 broad.mit.edu;ucsc.edu 37 3 52696148 52696148 + Splice_Site SNP C A A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C C A C C Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e PCSK5 5125 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 78601100 78601100 + Missense_Mutation SNP A A C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e PRMT8 56341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 3659255 3659255 + Missense_Mutation SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e PSG6 5675 broad.mit.edu;hgsc.bcm.edu 37 19 43415010 43415010 + Missense_Mutation SNP G G A rs186311462 by1000genomes TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e PTPN4 5775 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 120720267 120720267 + Nonsense_Mutation SNP G G T novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e PTPRB 5787 broad.mit.edu;hgsc.bcm.edu 37 12 71029653 71029653 + Silent SNP G G T novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e RAB40B 10966 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80622419 80622419 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e RGS18 64407 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 192150572 192150572 + Missense_Mutation SNP C C G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e SAMD15 161394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 77844922 77844922 + Silent SNP C C T novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e SHF 90525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 45470431 45470431 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e SIRPA 140885 hgsc.bcm.edu 37 20 1895842 1895842 + Silent SNP T T C rs17853847 bycluster;byfrequency;by1000genomes TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e STIL 6491 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 47725984 47725984 + Missense_Mutation SNP A A C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e SYT15 83849 hgsc.bcm.edu 37 10 46968675 46968679 + Frame_Shift_Del DEL ATCTC ATCTC - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 ATCTC ATCTC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e TOP3A 7156 hgsc.bcm.edu;ucsc.edu 37 17 18178133 18178133 + Frame_Shift_Del DEL A A - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e TRAF3IP1 26146 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 239233980 239233980 + Missense_Mutation SNP T T C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e TSC2 7249 hgsc.bcm.edu 37 16 2126068 2126068 + Splice_Site SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e TSC2 7249 hgsc.bcm.edu 37 16 2126070 2126070 + Missense_Mutation SNP T T A rs45463498 bycluster;alternate_allele TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e TSR1 55720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 2238674 2238674 + Missense_Mutation SNP C C A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e TUBA4A 7277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220115231 220115231 + Missense_Mutation SNP A A C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e UBA6 55236 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 68547886 68547886 + Silent SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e WTAP 9589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160174528 160174528 + Missense_Mutation SNP G G A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e LOC284232 0 broad.mit.edu 37 13 19432891 19432891 + RNA SNP C A A rs1937748 by2hit2allele;by1000genomes TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e OSBPL7 114881 broad.mit.edu 37 17 45891939 45891939 + Silent SNP G C C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e PLTP 5360 broad.mit.edu 37 20 44534935 44534935 + Missense_Mutation SNP G A A novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e SIPA1L3 23094 broad.mit.edu 37 19 38632053 38632053 + Missense_Mutation SNP T C C novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e SYNGAP1 8831 broad.mit.edu 37 6 33411625 33411625 + Missense_Mutation SNP A G G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e TSPY3 728137 broad.mit.edu 37 Y 9366667 9366672 + In_Frame_Del DEL GAAGAT - - novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 GAAGAT GAAGAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e TTN 7273 broad.mit.edu 37 2 179604751 179604751 + Missense_Mutation SNP C G G novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e Unknown 0 broad.mit.edu 37 1 13281 13281 + RNA SNP C G G rs78406944 byfrequency TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e SPRED1 161742 broad.mit.edu 37 15 38591664 38591664 + Silent SNP C T T novel TCGA-BP-4801-01A-02D-1421-08 TCGA-BP-4801-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM . . Illumina GAIIx d3e62cb1-5ced-42cb-a360-479ee01877aa 8e5edfea-ec07-46dd-824f-6b0ea9a34e3e