Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABTB1 80325 broad.mit.edu;hgsc.bcm.edu 37 3 127399686 127399686 + RNA SNP T T C novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 ARG2 384 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 68086727 68086727 + Silent SNP C C G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 ATXN1 6310 broad.mit.edu;ucsc.edu 37 6 16327452 16327452 + Missense_Mutation SNP G C C novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 B3GNT7 93010 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 232263303 232263303 + Missense_Mutation SNP G G C novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 BTBD11 121551 hgsc.bcm.edu;ucsc.edu 37 12 107713815 107713815 + Frame_Shift_Del DEL G G - novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 C19orf33 64073 hgsc.bcm.edu 37 19 38795587 38795587 + Missense_Mutation SNP A A G rs76762399 bycluster;byfrequency TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 C22orf42 150297 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 32555106 32555106 + Missense_Mutation SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 CDHR5 53841 hgsc.bcm.edu 37 11 617406 617407 + In_Frame_Ins INS - - CGCCCT novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 CEP68 23177 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 65299148 65299148 + Silent SNP T T G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 CIB4 130106 broad.mit.edu;hgsc.bcm.edu 37 2 26806745 26806745 + Missense_Mutation SNP A A G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 CORO1A 11151 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 30198495 30198495 + Missense_Mutation SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 GATC 283459 hgsc.bcm.edu 37 12 120884306 120884307 + Frame_Shift_Ins INS - - G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 GLB1 2720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 33038793 33038793 + Missense_Mutation SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 GNMT 27232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 42931107 42931107 + Silent SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 GPR152 390212 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 67220120 67220120 + Missense_Mutation SNP A A C novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 HLA-B 3106 hgsc.bcm.edu 37 6 31324542 31324542 + Missense_Mutation SNP T T C rs151341188 TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 IGF2 3481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 2154815 2154815 + Silent SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 KDM6A 7403 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 44949174 44949174 + Frame_Shift_Del DEL A A - novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 KIAA1244 57221 hgsc.bcm.edu 37 6 138657590 138657591 + Frame_Shift_Del DEL CA CA - novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 CA CA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 LRRC33 375387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196388312 196388312 + Missense_Mutation SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 LRRC33 375387 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 196388313 196388313 + Missense_Mutation SNP G G T novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 MEPCE 56257 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100031142 100031142 + Missense_Mutation SNP T T A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 NFE2L2 4780 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 178098799 178098799 + Missense_Mutation SNP T T G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 NFRKB 4798 hgsc.bcm.edu 37 11 129743673 129743674 + Frame_Shift_Ins INS - - G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 ODF3L1 161753 hgsc.bcm.edu;ucsc.edu 37 15 76019407 76019407 + Frame_Shift_Del DEL C C - novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 POLR1A 25885 hgsc.bcm.edu 37 2 86272423 86272424 + Frame_Shift_Ins INS - - G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 RPS20 6224 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 56986629 56986629 + Silent SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 SEC31A 22872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 83788377 83788377 + Silent SNP A A G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 SIX3 6496 broad.mit.edu;hgsc.bcm.edu 37 2 45171737 45171737 + Silent SNP C C A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 SORBS2 8470 hgsc.bcm.edu;ucsc.edu 37 4 186545056 186545067 + In_Frame_Del DEL CATGTCCCGGGG CATGTCCCGGGG - novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 CATGTCCCGGGG CATGTCCCGGGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 SSTR4 6754 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 23016583 23016583 + Missense_Mutation SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 TAOK2 9344 hgsc.bcm.edu 37 16 30002435 30002436 + Frame_Shift_Ins INS - - G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 TMC8 147138 hgsc.bcm.edu 37 17 76127732 76127732 + Silent SNP G G A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 TNFRSF4 7293 broad.mit.edu;hgsc.bcm.edu 37 1 1149473 1149473 + Missense_Mutation SNP G G T novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 YME1L1 10730 hgsc.bcm.edu 37 10 27436462 27436463 + Frame_Shift_Del DEL GC GC - rs151242856 by1000genomes TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 ZDHHC16 84287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 99211881 99211881 + Missense_Mutation SNP C C T novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 HSPG2 3339 broad.mit.edu 37 1 22166039 22166039 + Missense_Mutation SNP G C C novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 OGFR 11054 broad.mit.edu 37 20 61442846 61442846 + Silent SNP G A A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 TBX10 347853 broad.mit.edu 37 11 67401787 67401787 + Missense_Mutation SNP T G G novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 TSPAN19 144448 broad.mit.edu 37 12 85423547 85423547 + Frame_Shift_Del DEL C - - novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 Unknown 0 broad.mit.edu 37 15 102312241 102312241 + RNA DEL A - - novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02 Unknown 0 broad.mit.edu 37 9 68413573 68413573 + RNA SNP G A A novel TCGA-B2-4098-01A-01D-1458-08 TCGA-B2-4098-10A-01D-1458-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 76faa3c6-4474-433c-89e3-e78b68573ac5 db55656f-778d-4864-8679-61caa7e12c02