Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACADS 35 broad.mit.edu;ucsc.edu 37 12 121176678 121176678 + Missense_Mutation SNP G A A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 ACE2 59272 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15591566 15591566 + Nonsense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 APBB1 322 hgsc.bcm.edu;ucsc.edu 37 11 6423907 6423907 + Silent SNP G G A rs1800424 bycluster;byfrequency;by1000genomes TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 ARHGEF11 9826 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156909401 156909401 + Missense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 ARHGEF37 389337 hgsc.bcm.edu 37 5 149001322 149001323 + Frame_Shift_Ins INS - - C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 BSN 8927 broad.mit.edu;hgsc.bcm.edu 37 3 49662433 49662433 + Missense_Mutation SNP G G A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 C2orf3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 75907426 75907426 + Missense_Mutation SNP G G T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 C3orf33 285315 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 155493591 155493591 + Missense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 CACNA1S 779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 201041938 201041938 + Silent SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 CACNG5 27091 hgsc.bcm.edu;ucsc.edu 37 17 64873504 64873505 + Frame_Shift_Ins INS - - TG novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 CD27 939 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6554632 6554632 + Missense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 COL19A1 1310 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 70878567 70878567 + Silent SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 COL4A5 1287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 107938641 107938641 + Nonsense_Mutation SNP G G A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 CSAG1 158511 hgsc.bcm.edu;ucsc.edu 37 X 151908814 151908814 + Frame_Shift_Del DEL G G - novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 DACH2 117154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 85906058 85906058 + Missense_Mutation SNP G G C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 DDX3X 1654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 41202084 41202084 + Missense_Mutation SNP G G C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 DHX35 60625 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37650496 37650496 + Missense_Mutation SNP G G T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51778458 51778458 + Nonsense_Mutation SNP G G T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 DMXL2 23312 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 51778460 51778460 + Silent SNP A A G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11648186 11648186 + Missense_Mutation SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 EBLN2 55096 hgsc.bcm.edu 37 3 73111481 73111481 + Missense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 FAM105B 90268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 14693052 14693052 + Silent SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 FEM1B 10116 broad.mit.edu;ucsc.edu 37 15 68582835 68582835 + Missense_Mutation SNP A T T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 GBF1 8729 hgsc.bcm.edu;ucsc.edu 37 10 104118423 104118423 + Silent SNP G G T rs142955445 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 GPR98 84059 broad.mit.edu;ucsc.edu 37 5 90281200 90281200 + Missense_Mutation SNP C A A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 HOOK1 51361 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 60325915 60325915 + Missense_Mutation SNP G G C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 HOXB13 10481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 46805408 46805408 + Missense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 IGF2R 3482 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 160509177 160509177 + Missense_Mutation SNP G G T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 IL1RAPL2 26280 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 104961379 104961379 + Silent SNP C C G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 ITGAX 3687 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 31388553 31388553 + Missense_Mutation SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 ITSN1 6453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 35144369 35144369 + Silent SNP G G C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 JAKMIP3 282973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 133961488 133961488 + Silent SNP C C G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 KBTBD4 55709 broad.mit.edu;hgsc.bcm.edu 37 11 47599123 47599123 + Silent SNP T T C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 KLF10 7071 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 103664082 103664082 + Missense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 KRT5 3852 broad.mit.edu;hgsc.bcm.edu 37 12 52910988 52910988 + Missense_Mutation SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 LOC81691 81691 broad.mit.edu;ucsc.edu 37 16 20824600 20824600 + Missense_Mutation SNP G A A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 MPP1 4354 broad.mit.edu;ucsc.edu 37 X 154010064 154010064 + Silent SNP C A A rs147268060 alternate_allele TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 MS4A14 84689 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60183100 60183100 + Missense_Mutation SNP A A C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 MUC4 4585 hgsc.bcm.edu 37 3 195508442 195508537 + In_Frame_Del DEL CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA - novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 MUC4 4585 hgsc.bcm.edu 37 3 195515413 195515413 + Missense_Mutation SNP C C T rs55868431 TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 MYCBP2 23077 broad.mit.edu;ucsc.edu 37 13 77629761 77629761 + Missense_Mutation SNP A G G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 MYOM1 8736 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 3135721 3135721 + Missense_Mutation SNP G G A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 NCRNA00219 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 111496807 111496807 + RNA SNP A A G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 OR2B3 442184 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29054173 29054173 + Silent SNP A A G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 POU2F1 5451 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 167365627 167365627 + Missense_Mutation SNP G G T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 PPP1R9A 55607 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 94540664 94540664 + Silent SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 PSMB7 5695 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 127177673 127177673 + Missense_Mutation SNP A A T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 RIN2 54453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 19977395 19977395 + Missense_Mutation SNP G G A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 SACS 26278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 23907922 23907922 + Missense_Mutation SNP G G C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 SAG 6295 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 234235795 234235795 + Missense_Mutation SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 SEMA3E 9723 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82997339 82997339 + Nonsense_Mutation SNP T T A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 SLC26A4 5172 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 107334908 107334908 + Silent SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 SOX5 6660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 23998950 23998950 + Nonsense_Mutation SNP T T A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 SPRED1 161742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 38591742 38591742 + Missense_Mutation SNP C C G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C C G C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 STAG2 10735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 123197875 123197875 + Missense_Mutation SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 STRN4 29888 broad.mit.edu;ucsc.edu 37 19 47228597 47228597 + Silent SNP C G G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 STT3A 3703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 125479362 125479362 + Nonsense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57489997 57489997 + Missense_Mutation SNP A A G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 TCF12 6938 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 57489998 57489998 + Missense_Mutation SNP A A G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 TFDP3 51270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132351937 132351937 + Silent SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 TJP2 9414 hgsc.bcm.edu;ucsc.edu 37 9 71842779 71842780 + Frame_Shift_Ins INS - - A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 TSEN2 80746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 12545142 12545142 + Silent SNP C C T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 TTC21B 79809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 166731270 166731270 + Missense_Mutation SNP G G T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 UBE2Q1 55585 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 154527220 154527220 + Missense_Mutation SNP C C A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 UPF0639 0 broad.mit.edu;ucsc.edu 37 14 69992827 69992827 + Missense_Mutation SNP T C C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 URB1 9875 broad.mit.edu;ucsc.edu 37 21 33697561 33697561 + Missense_Mutation SNP G A A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 VHL 7428 hgsc.bcm.edu;ucsc.edu 37 3 10188268 10188268 + Frame_Shift_Del DEL G G - novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 WDR75 84128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 190324065 190324065 + Silent SNP G G A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 ZKSCAN3 80317 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 28329175 28329175 + Silent SNP A A G novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 ZNF765 91661 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 53910951 53910951 + Missense_Mutation SNP A A T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 ZSWIM6 57688 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 60827477 60827477 + Missense_Mutation SNP T T A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 CSMD1 64478 broad.mit.edu 37 8 3245041 3245041 + Nonsense_Mutation SNP C T T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 DMKN 93099 broad.mit.edu 37 19 35991482 35991482 + Missense_Mutation SNP C T T novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 EDC4 23644 broad.mit.edu 37 16 67917881 67917881 + Missense_Mutation SNP C A A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 GMCL1 64395 broad.mit.edu 37 2 70057234 70057234 + Silent SNP G A A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 LOC441666 441666 broad.mit.edu 37 10 42833154 42833154 + RNA SNP T C C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 MAMLD1 10046 broad.mit.edu 37 X 149639327 149639327 + Silent SNP G A A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 NOS2 4843 broad.mit.edu 37 17 26091141 26091141 + Missense_Mutation SNP G C C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 SLC26A1 10861 broad.mit.edu 37 4 983003 983003 + Frame_Shift_Del DEL T - - novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 STXBP5 134957 broad.mit.edu 37 6 147588238 147588238 + Missense_Mutation SNP T C C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 TSC2 7249 broad.mit.edu 37 16 2131631 2131631 + Missense_Mutation SNP C A A novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 Unknown 0 broad.mit.edu 37 17 18315107 18315108 + RNA INS - CT CT rs113907775 bycluster;by1000genomes TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 WASL 8976 broad.mit.edu 37 7 123332841 123332841 + Missense_Mutation SNP G C C novel TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35 WDR52 55779 broad.mit.edu 37 3 113049451 113049451 + Missense_Mutation SNP A C C rs79365690 TCGA-B0-5709-01A-11D-1534-10 TCGA-B0-5709-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx bfeaecbe-7148-4642-b69a-b908a248f328 3eddc24f-dc63-45e6-b4db-f40af3af4d35