Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID A2ML1 144568 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9008181 9008181 + Silent SNP G G A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 ADAMTS18 170692 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 77353798 77353798 + Missense_Mutation SNP C C T rs149031657 byfrequency;alternate_allele TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 AK7 122481 hgsc.bcm.edu 37 14 96949471 96949472 + Frame_Shift_Ins INS - - G novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 ARMC4 55130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 28229610 28229610 + Missense_Mutation SNP G G A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 BOC 91653 broad.mit.edu;ucsc.edu 37 3 112969550 112969550 + Silent SNP G T T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 C12orf11 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 27081163 27081163 + Missense_Mutation SNP T T C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 C12orf35 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32134198 32134198 + Missense_Mutation SNP A A C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 C7orf58 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 120782148 120782148 + Missense_Mutation SNP C C T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 C9orf85 138241 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 74526670 74526670 + Missense_Mutation SNP A A T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CARS2 79587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111340142 111340142 + Missense_Mutation SNP G G T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CCDC160 347475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 133379666 133379666 + Missense_Mutation SNP G G A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CDH4 1002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60511821 60511821 + Silent SNP C C T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CDV3 55573 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 133302937 133302937 + Missense_Mutation SNP T T C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CLCN4 1183 hgsc.bcm.edu;ucsc.edu 37 X 10180545 10180545 + Silent SNP C C T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CRIPAK 285464 hgsc.bcm.edu 37 4 1388500 1388500 + Silent SNP C C T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CUL7 9820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 43019452 43019452 + Missense_Mutation SNP C C G novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CUX1 1523 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 101926034 101926034 + Missense_Mutation SNP A A T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 DNAH6 1768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 84912547 84912547 + Silent SNP T T C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 FAM47C 442444 broad.mit.edu;hgsc.bcm.edu 37 X 37028223 37028223 + Silent SNP C C A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 FCGRT 2217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50017370 50017370 + Missense_Mutation SNP T T A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 FCRL5 83416 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 157497598 157497598 + Missense_Mutation SNP G G A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 GALNT10 55568 broad.mit.edu;ucsc.edu 37 5 153709212 153709212 + Missense_Mutation SNP T C C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 GDF15 9518 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18497194 18497194 + Silent SNP C C A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 HIST2H2AB 317772 hgsc.bcm.edu;ucsc.edu 37 1 149859184 149859185 + Frame_Shift_Del INS - - CA novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 IPO7 10527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 9459375 9459375 + Missense_Mutation SNP G G A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 KIR2DS4 3809 broad.mit.edu;hgsc.bcm.edu 37 19 55351066 55351066 + Missense_Mutation SNP C C T rs1130503 TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 KLHL10 317719 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40004451 40004451 + Silent SNP A A C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197614 39197614 + Silent SNP G G A rs141856614 by1000genomes TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 KRTAP1-1 81851 hgsc.bcm.edu 37 17 39197638 39197638 + Silent SNP A A G rs112542604 by1000genomes TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LAMA3 3909 hgsc.bcm.edu 37 18 21353525 21353525 + Missense_Mutation SNP C C G novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LAMA3 3909 hgsc.bcm.edu;ucsc.edu 37 18 21353526 21353527 + Frame_Shift_Ins INS - - T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LIG1 3978 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 48634399 48634399 + Missense_Mutation SNP C C A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LMO7 4008 hgsc.bcm.edu;ucsc.edu 37 13 76381790 76381791 + Frame_Shift_Ins INS - - T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LPAR4 2846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78011222 78011222 + Nonsense_Mutation SNP G G T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LRRCC1 85444 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 86037088 86037088 + Missense_Mutation SNP A A C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LRRTM2 26045 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 138209538 138209538 + Missense_Mutation SNP A A C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LTBP1 4052 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 33534615 33534615 + Missense_Mutation SNP C C G novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 MKKS 8195 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 10393381 10393381 + Missense_Mutation SNP A A G novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 MLLT4 4301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 168344647 168344647 + Missense_Mutation SNP G G T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 MMP2 4313 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 55519518 55519518 + Missense_Mutation SNP G G A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 MTOR 2475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 11177077 11177077 + Missense_Mutation SNP A A C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A A C A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 NARG2 79664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 60740179 60740179 + Missense_Mutation SNP T T A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 NDUFA1 4694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 119005937 119005937 + Silent SNP G G A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 NFATC4 4776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24845299 24845299 + Missense_Mutation SNP T T G novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 NFIA 4774 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 61743222 61743222 + Missense_Mutation SNP C C T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 OPN4 94233 broad.mit.edu;hgsc.bcm.edu 37 10 88422065 88422065 + Missense_Mutation SNP G G A rs142050572 TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 OR10G4 390264 broad.mit.edu;hgsc.bcm.edu 37 11 123887117 123887117 + Missense_Mutation SNP C C T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 OR2J2 26707 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 29141782 29141782 + Missense_Mutation SNP T T C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 OR5K3 403277 hgsc.bcm.edu 37 3 98110406 98110407 + Frame_Shift_Ins INS - - A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 PER1 5187 broad.mit.edu;ucsc.edu 37 17 8052099 8052099 + Missense_Mutation SNP C A A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 POMT1 10585 broad.mit.edu;ucsc.edu 37 9 134379711 134379711 + Missense_Mutation SNP T C C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 PRB4 5545 broad.mit.edu;hgsc.bcm.edu 37 12 11461568 11461568 + Missense_Mutation SNP G G T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 PRRG2 5639 hgsc.bcm.edu 37 19 50093217 50093218 + In_Frame_Ins INS - - CCACCC novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 RBM34 23029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235295228 235295228 + Missense_Mutation SNP T T G novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 RBM8A 9939 broad.mit.edu;hgsc.bcm.edu 37 1 145509177 145509177 + Missense_Mutation SNP G G T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 ROCK2 9475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 11348011 11348011 + Missense_Mutation SNP T T A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 ROCK2 9475 broad.mit.edu;ucsc.edu 37 2 11348012 11348012 + Missense_Mutation SNP C T T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 SERPINB1 1992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 2836102 2836102 + Silent SNP C C T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 SETX 23064 hgsc.bcm.edu;ucsc.edu 37 9 135202188 135202190 + In_Frame_Del DEL AAA AAA - novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 AAA AAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 SMARCE1 6605 hgsc.bcm.edu;ucsc.edu 37 17 38793756 38793758 + In_Frame_Del DEL CCT CCT - novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 CCT CCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 SUN5 140732 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 31571646 31571646 + Missense_Mutation SNP G G A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191499 10191499 + Frame_Shift_Del DEL G G - novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 WDR78 79819 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67358977 67358977 + Missense_Mutation SNP T T G novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 XRN2 22803 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 21321460 21321460 + Silent SNP A A T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 ZHX3 23051 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 39832047 39832047 + Nonsense_Mutation SNP C C A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 ZSCAN18 65982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 58597544 58597544 + Missense_Mutation SNP G G T novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 ALMS1 7840 broad.mit.edu 37 2 73613032 73613037 + In_Frame_Del DEL GGAGGA - - rs66480235 bycluster TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 GGAGGA GGAGGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 ATP5EP2 432369 broad.mit.edu 37 13 28519646 28519646 + RNA DEL A - - novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 BRCC3 79184 broad.mit.edu 37 X 154344345 154344345 + Missense_Mutation SNP G A A novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CROCCL1 0 broad.mit.edu 37 1 16946434 16946434 + RNA SNP C T T rs367060 by2hit2allele TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 CROCCL1 0 broad.mit.edu 37 1 16946438 16946438 + RNA SNP G A A rs28392876 bycluster;byfrequency TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 LOC284232 0 broad.mit.edu 37 13 19411895 19411895 + RNA SNP A G G rs7334605 bycluster;by1000genomes TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 S1PR4 8698 broad.mit.edu 37 19 3179916 3179916 + Missense_Mutation SNP T C C novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 SOLH 6650 broad.mit.edu 37 16 603028 603063 + Splice_Site DEL CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC - - novel TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC CCACCCCTGCACAGGTGCGCCCCCGCCCCTGCCCCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 Unknown 0 broad.mit.edu 37 16 21902088 21902088 + RNA SNP C T T rs55647608 byfrequency TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 Unknown 0 broad.mit.edu 37 16 21902089 21902089 + RNA SNP A G G rs771216 bycluster TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85 Unknown 0 broad.mit.edu 37 9 68414338 68414338 + RNA SNP G T T rs62545747 TCGA-B0-5691-01A-11D-1534-10 TCGA-B0-5691-11A-01D-1534-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx ac2e1d29-e239-4dab-9d81-77c8d45970eb 732d3bc7-b0c9-4999-9e3a-3f831f437d85