Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADAP1 11033 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 939073 939073 + Missense_Mutation SNP A A C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 AKR1B10 57016 hgsc.bcm.edu;ucsc.edu 37 7 134222410 134222410 + Silent SNP C C T rs61735101 bycluster;byfrequency;by1000genomes TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 ALPK3 57538 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 85406027 85406027 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 ARHGAP5 394 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 32560575 32560575 + Frame_Shift_Del DEL A A - novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 ATR 545 hgsc.bcm.edu;ucsc.edu 37 3 142266605 142266605 + Frame_Shift_Del DEL A A - novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 BAP1 8314 broad.mit.edu;hgsc.bcm.edu 37 3 52442512 52442512 + Missense_Mutation SNP T T C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 C17orf103 256302 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 21147503 21147503 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 C3 718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 6686809 6686809 + Missense_Mutation SNP C C G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 C6orf35 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 157744466 157744466 + Silent SNP A A G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CAPN3 825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 42702005 42702005 + Missense_Mutation SNP T T G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CCNT1 904 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 49110458 49110458 + Missense_Mutation SNP T T G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CHL1 10752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 443351 443351 + Missense_Mutation SNP C C T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CIDEB 27141 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24774973 24774973 + Splice_Site SNP T T C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CPEB1 64506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 83226709 83226709 + Missense_Mutation SNP C C A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CPXCR1 53336 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 88009260 88009260 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CRK 1398 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 1326915 1326915 + Silent SNP A A G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CUX1 1523 hgsc.bcm.edu;ucsc.edu 37 7 101845357 101845358 + Frame_Shift_Ins INS - - C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CUZD1 50624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 124593448 124593448 + Missense_Mutation SNP C C T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 CYP26B1 56603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 72359545 72359545 + Missense_Mutation SNP G G T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 ECM1 1893 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150482475 150482475 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 EVPL 2125 broad.mit.edu;hgsc.bcm.edu 37 17 74011147 74011147 + Missense_Mutation SNP C C T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 FBN3 84467 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 8165827 8165827 + Missense_Mutation SNP C C T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 FCRLA 84824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 161677075 161677075 + Silent SNP C C A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 FGFBP1 9982 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 15938034 15938034 + Missense_Mutation SNP C C A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 FLVCR2 55640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 76088434 76088434 + Missense_Mutation SNP A A G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 GP6 51206 hgsc.bcm.edu 37 19 55526103 55526104 + Frame_Shift_Ins INS - - CAGA rs113550298 TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 GPX6 257202 hgsc.bcm.edu;ucsc.edu 37 6 28483478 28483478 + Frame_Shift_Del DEL G G - novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 JMY 133746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78608277 78608277 + Missense_Mutation SNP C C A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7026067 7026067 + Silent SNP C C T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 MAB21L1 4081 broad.mit.edu;ucsc.edu 37 13 36049373 36049373 + Silent SNP G A A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 NEB 4703 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152352797 152352797 + Missense_Mutation SNP A A G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A A G A A Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 NHS 4810 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17745608 17745608 + Missense_Mutation SNP C C G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 NLRX1 79671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 119050726 119050726 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 NPBWR2 2832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 62737383 62737383 + Missense_Mutation SNP C C T rs140478149 TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 NRF1 4899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 129297261 129297261 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 NTN4 59277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 96181160 96181161 + Frame_Shift_Del DEL AG AG - novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 AG AG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 NVL 4931 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 224491542 224491542 + Silent SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 OR1A1 8383 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 3119395 3119395 + Missense_Mutation SNP C C A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 OR2T1 26696 hgsc.bcm.edu;ucsc.edu 37 1 248569296 248569297 + Frame_Shift_Ins INS - - TGTG novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 PBRM1 55193 hgsc.bcm.edu 37 3 52676063 52676063 + Splice_Site SNP T T A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 PHKA2 5256 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 18970644 18970644 + Missense_Mutation SNP T T A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 POC1B 282809 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 89885726 89885726 + Frame_Shift_Del DEL C C - novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 PPEF1 5475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 18836212 18836212 + Nonsense_Mutation SNP C C T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 PRKDC 5591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 48694798 48694798 + Missense_Mutation SNP C C T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 PRRC2A 7916 broad.mit.edu;hgsc.bcm.edu 37 6 31599655 31599655 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 RABGAP1 23637 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 125865394 125865394 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 RANBP2 5903 broad.mit.edu;hgsc.bcm.edu 37 2 109384143 109384143 + Missense_Mutation SNP A A G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 RBM14 10432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 66391778 66391778 + Missense_Mutation SNP T T G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 RHPN2 85415 broad.mit.edu;hgsc.bcm.edu 37 19 33493761 33493761 + Silent SNP A A G novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 RSPO1 284654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38079542 38079542 + Nonsense_Mutation SNP C C T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 SHANK2 22941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 70332433 70332433 + Missense_Mutation SNP G G C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 SMARCA2 6595 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 2116050 2116050 + Splice_Site SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 SPAG17 200162 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 118598450 118598450 + Missense_Mutation SNP T T A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 SUN1 23353 broad.mit.edu;ucsc.edu 37 7 912892 912892 + Missense_Mutation SNP G A A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 TLR4 7099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 120475390 120475390 + Silent SNP T T C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 TLR8 51311 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 12939545 12939545 + Missense_Mutation SNP C C A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 TXNDC12 51060 broad.mit.edu;ucsc.edu 37 1 52492991 52492991 + Nonsense_Mutation SNP C A A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 USP29 57663 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57640818 57640818 + Nonsense_Mutation SNP G G T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10183794 10183794 + Missense_Mutation SNP G G T rs119103277 alternate_allele TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I WXS Illumina Miseq Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 WDR37 22884 broad.mit.edu;hgsc.bcm.edu 37 10 1149775 1149775 + Silent SNP A A C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 WIF1 11197 hgsc.bcm.edu;ucsc.edu 37 12 65461562 65461562 + Missense_Mutation SNP G G T novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 ZFPM2 23414 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 106813890 106813890 + Missense_Mutation SNP G G A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 ANLN 54443 broad.mit.edu 37 7 36478858 36478858 + Missense_Mutation SNP A C C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 FAM86D 0 broad.mit.edu 37 3 75475709 75475709 + Missense_Mutation SNP T C C novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8 MUC5B 727897 broad.mit.edu 37 11 1268529 1268529 + Silent SNP G A A novel TCGA-B0-5107-01A-01D-1421-08 TCGA-B0-5107-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 2086a2e1-0451-45ba-9ca3-d4e5f61e590b 3120fe95-115c-4fea-acc0-40c37f8c24e8