Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID A2M 2 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9248168 9248168 + Missense_Mutation SNP A A T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c ACO1 48 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32408576 32408576 + Missense_Mutation SNP C C A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c AHNAK2 113146 broad.mit.edu;hgsc.bcm.edu 37 14 105414746 105414746 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c AMPD3 272 hgsc.bcm.edu 37 11 10500152 10500153 + Frame_Shift_Ins INS - - C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c AP2B1 163 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 33932800 33932800 + Missense_Mutation SNP A A T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c ARRDC5 645432 broad.mit.edu;hgsc.bcm.edu 37 19 4891119 4891119 + Missense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c BTNL3 10917 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 180420008 180420008 + Missense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CADM3 57863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 159161760 159161760 + Silent SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CCDC112 153733 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 114620509 114620509 + Missense_Mutation SNP G G A rs187304678 by1000genomes TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CCDC88A 55704 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 55570817 55570817 + Missense_Mutation SNP C C G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CDH4 1002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 60499473 60499473 + Missense_Mutation SNP C C A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CENPF 1063 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 214825173 214825173 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CFP 5199 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 47485783 47485783 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CLCN4 1183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 10176319 10176319 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CNOT1 23019 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 58572759 58572763 + Frame_Shift_Del DEL GTAGC GTAGC - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 GTAGC GTAGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c CRYZ 1429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 75172631 75172631 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c DHRS13 147015 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 27228249 27228249 + Frame_Shift_Del DEL A A - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c DHX37 57647 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 125462030 125462030 + Missense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c ECM2 1842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 95272275 95272275 + Missense_Mutation SNP A A C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c ERCC6 2074 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 50690813 50690813 + Silent SNP A A G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c FAM171B 165215 hgsc.bcm.edu 37 2 187559050 187559050 + Silent SNP A A G rs75768569 TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c FANCE 2178 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35426171 35426171 + Missense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c GCNT1 2650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 79117316 79117316 + Nonsense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c GOSR1 9527 broad.mit.edu;hgsc.bcm.edu 37 17 28846964 28846964 + Missense_Mutation SNP A A G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c GPR180 160897 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 95271760 95271762 + In_Frame_Del DEL GTT GTT - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 GTT GTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c GPRIN2 9721 hgsc.bcm.edu 37 10 46999591 46999592 + In_Frame_Ins INS - - ATGAGGGAG rs112620425 TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c GRM1 2911 hgsc.bcm.edu;ucsc.edu 37 6 146351323 146351324 + Frame_Shift_Del INS - - A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c HPN 3249 broad.mit.edu;ucsc.edu 37 19 35540222 35540222 + Silent SNP A G G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c HSP90AB1 3326 hgsc.bcm.edu;ucsc.edu 37 6 44219603 44219604 + Frame_Shift_Ins INS - - C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c HSPA8 3312 broad.mit.edu;hgsc.bcm.edu 37 11 122930262 122930262 + Nonsense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c HSPA8 3312 broad.mit.edu;hgsc.bcm.edu 37 11 122930264 122930264 + Missense_Mutation SNP A A T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c IGF2R 3482 broad.mit.edu;ucsc.edu 37 6 160526024 160526024 + Frame_Shift_Del DEL G - - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c IL21 59067 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 123542048 123542048 + Missense_Mutation SNP C C T rs141748932 bycluster;by1000genomes TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c INTS10 55174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 19687916 19687916 + Splice_Site SNP G G C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c IRF9 10379 broad.mit.edu;hgsc.bcm.edu 37 14 24635394 24635394 + Missense_Mutation SNP T T C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c LGALS8 3964 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 236711354 236711354 + Missense_Mutation SNP A A C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c MALAT1 378938 broad.mit.edu;hgsc.bcm.edu 37 11 65270626 65270626 + RNA SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c MEI1 150365 hgsc.bcm.edu 37 22 42180689 42180690 + Frame_Shift_Ins INS - - C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c MIR548F1 100302192 broad.mit.edu;hgsc.bcm.edu 37 1 186281526 186281526 + RNA SNP A A C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c MIR548F1 100302192 broad.mit.edu;hgsc.bcm.edu 37 1 186281553 186281553 + RNA SNP A A C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c MLL3 58508 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 151877175 151877175 + Nonsense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c MYST3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 41836218 41836218 + Missense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c NAV3 89795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 78400974 78400974 + Missense_Mutation SNP G G T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c NEO1 4756 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 73575304 73575304 + Splice_Site SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c NFAM1 150372 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42807545 42807546 + Frame_Shift_Ins INS - - C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c NPNT 255743 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106848531 106848531 + Missense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c P4HA2 8974 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 131543565 131543565 + Nonsense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c PCBD2 84105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 134294744 134294744 + Missense_Mutation SNP G G T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c PLAC8L1 153770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 145477733 145477733 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c PPA2 27068 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 106395063 106395063 + Missense_Mutation SNP G G A rs142379853 TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c PPP6R1 22870 broad.mit.edu;hgsc.bcm.edu 37 19 55748092 55748092 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c PURG 29942 hgsc.bcm.edu;ucsc.edu 37 8 30889951 30889958 + Frame_Shift_Del DEL CTTCAGCT CTTCAGCT - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 CTTCAGCT CTTCAGCT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c RAD54L 8438 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 46726269 46726269 + Frame_Shift_Del DEL C C - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c RAI14 26064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 34757614 34757614 + Silent SNP C C G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c RAPGEF6 51735 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 130764648 130764648 + Missense_Mutation SNP T T G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c RNF20 56254 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 104316360 104316360 + Missense_Mutation SNP G G T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c ROCK1 6093 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 18586538 18586538 + Missense_Mutation SNP T T A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SASS6 163786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 100575995 100575995 + Silent SNP A A G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SCN9A 6335 hgsc.bcm.edu;ucsc.edu 37 2 167060645 167060645 + Frame_Shift_Del DEL T T - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SCUBE1 80274 broad.mit.edu;hgsc.bcm.edu 37 22 43625097 43625097 + Silent SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49284863 49284863 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C C T C C Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SECISBP2L 9728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 49284864 49284864 + Silent SNP A A C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A A C A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SERF2 10169 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44085976 44085976 + Missense_Mutation SNP G G C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SFMBT1 51460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52960072 52960072 + Missense_Mutation SNP G G C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SFMBT1 51460 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52960073 52960073 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SLC15A3 51296 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60709539 60709539 + Missense_Mutation SNP C C T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c SNORA47 677828 broad.mit.edu;hgsc.bcm.edu 37 5 76376388 76376388 + RNA SNP A A G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c STAT6 6778 hgsc.bcm.edu 37 12 57499020 57499021 + Frame_Shift_Ins INS - - G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c TAF1L 138474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32630843 32630843 + Missense_Mutation SNP G G T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c TAF1L 138474 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32630844 32630844 + Missense_Mutation SNP C C G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c THBS1 7057 broad.mit.edu;hgsc.bcm.edu 37 15 39882824 39882824 + Missense_Mutation SNP G G T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c TMEM45B 120224 broad.mit.edu;hgsc.bcm.edu 37 11 129728494 129728494 + Missense_Mutation SNP G G A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c TNRC6C 57690 hgsc.bcm.edu 37 17 76083029 76083029 + Frame_Shift_Del DEL G G - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c TOM1L2 146691 broad.mit.edu;ucsc.edu 37 17 17769632 17769632 + Silent SNP G T T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c TSGA14 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 130042593 130042593 + Missense_Mutation SNP T T C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c UBXN6 80700 broad.mit.edu;hgsc.bcm.edu 37 19 4446542 4446542 + Missense_Mutation SNP A A C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c USP26 83844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 132160271 132160271 + Missense_Mutation SNP A A G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c VANGL2 57216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 160385972 160385972 + Silent SNP G G C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10191482 10191482 + Frame_Shift_Del DEL A A - novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c YTHDC1 91746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 69204039 69204039 + Missense_Mutation SNP T T C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c FLJ33360 401172 broad.mit.edu 37 5 6312623 6312623 + Missense_Mutation SNP A G G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c GNAS 2778 broad.mit.edu 37 20 57428891 57428891 + Missense_Mutation SNP G C C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c LOC146880 146880 broad.mit.edu 37 17 62750126 62750126 + RNA SNP A G G novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c LOC441666 441666 broad.mit.edu 37 10 42832122 42832122 + RNA SNP C T T novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c MRPS18A 55168 broad.mit.edu 37 6 43655468 43655468 + Missense_Mutation SNP C A A novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c Unknown 0 broad.mit.edu 37 12 31279359 31279359 + Missense_Mutation SNP A C C novel TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c ZNF534 147658 broad.mit.edu 37 19 52942411 52942411 + Silent SNP G A A rs113700997 bycluster;byfrequency TCGA-B0-5099-01A-01D-1421-08 TCGA-B0-5099-11A-01D-1421-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx c3150136-ae55-49d0-9212-86728464167d 1b289013-495e-4a64-a3d1-4e5618c62f4c