Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCC9 10060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21960403 21960403 + Silent SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 AKNAD1 254268 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 109366227 109366227 + Missense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 ARIH1 25820 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 72848195 72848195 + Silent SNP T T C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 ATP1A3 478 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42482093 42482093 + Missense_Mutation SNP G G C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 ATXN7 6314 hgsc.bcm.edu;ucsc.edu 37 3 63973813 63973813 + Frame_Shift_Del DEL A A - novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52443866 52443866 + Missense_Mutation SNP C C G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 BTNL2 56244 hgsc.bcm.edu 37 6 32370970 32370970 + Frame_Shift_Del DEL G G - rs139418003 bycluster;by1000genomes TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 C6orf142 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 54095578 54095578 + Missense_Mutation SNP G G T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 C9orf114 51490 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 131586388 131586388 + Missense_Mutation SNP C C A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 CACNG5 27091 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 64875148 64875148 + Silent SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 CASZ1 54897 hgsc.bcm.edu 37 1 10718609 10718610 + Frame_Shift_Ins INS - - G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 CCNB2 9133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 59406998 59406998 + Missense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 CCNT2 905 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 135711411 135711411 + Silent SNP A A G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 CHL1 10752 broad.mit.edu;hgsc.bcm.edu 37 3 391066 391066 + Missense_Mutation SNP C C A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 CNTNAP1 8506 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40848118 40848118 + Missense_Mutation SNP G G C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 COL1A1 1277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 48272628 48272628 + Missense_Mutation SNP C C T rs72648328 alternate_allele TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 CTBP2 1488 broad.mit.edu;hgsc.bcm.edu 37 10 126683133 126683133 + Silent SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 DACT1 51339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 59113096 59113096 + Silent SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 DST 667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 56399926 56399926 + Silent SNP T T C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 EEFSEC 60678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128060617 128060617 + Missense_Mutation SNP G G C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 EEFSEC 60678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128060618 128060618 + Silent SNP G G T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 EXPH5 23086 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 108382192 108382192 + Missense_Mutation SNP C C G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 FAM83D 81610 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 37580732 37580732 + Nonsense_Mutation SNP C C T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 FLNC 2318 broad.mit.edu;hgsc.bcm.edu 37 7 128494133 128494133 + Missense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 FMN2 56776 broad.mit.edu;ucsc.edu 37 1 240370625 240370625 + Missense_Mutation SNP A G G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 GFRAL 389400 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 55214903 55214903 + Missense_Mutation SNP G G T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 GNL2 29889 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 38059398 38059398 + Silent SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 GPR172A 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145584463 145584463 + Missense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 IGF2BP2 10644 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 185393190 185393190 + Missense_Mutation SNP T T A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 ITGB2 3689 broad.mit.edu;ucsc.edu 37 21 46321408 46321408 + Missense_Mutation SNP G A A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 KBTBD10 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170371427 170371427 + Silent SNP A A T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 KCNV2 169522 broad.mit.edu;hgsc.bcm.edu 37 9 2718197 2718197 + Missense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 KDM5B 10765 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 202777266 202777266 + Silent SNP G G C rs150129345 byfrequency;alternate_allele TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 KIAA0564 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 42361642 42361642 + Missense_Mutation SNP T T G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 KLK13 26085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51559929 51559929 + Missense_Mutation SNP C C T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 LAMA1 284217 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 7009293 7009293 + Missense_Mutation SNP C C T rs149753863 byfrequency TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 LRP1B 53353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 141773379 141773379 + Silent SNP T T G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T T G T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 LYST 1130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 235894212 235894212 + Missense_Mutation SNP A A C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 MAPK4 5596 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 48190332 48190332 + Missense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 MEGF9 1955 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 123384993 123384993 + Missense_Mutation SNP T T C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 METTL13 51603 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 171756920 171756920 + Missense_Mutation SNP C C G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 MIR1297 100302187 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 54886172 54886172 + RNA SNP T T A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 MYOM3 127294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 24432548 24432548 + Missense_Mutation SNP T T C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 NAGK 55577 broad.mit.edu;hgsc.bcm.edu 37 2 71299785 71299785 + Missense_Mutation SNP A A G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 NHEDC1 0 hgsc.bcm.edu 37 4 103822483 103822484 + Frame_Shift_Del DEL AC AC - novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 AC AC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 NOS1 4842 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 117768660 117768660 + Missense_Mutation SNP A A G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 NRIP1 8204 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 16338035 16338035 + Nonsense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 NSMCE4A 54780 hgsc.bcm.edu;ucsc.edu 37 10 123730567 123730569 + In_Frame_Del DEL CTT CTT - novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 CTT CTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 OR5H15 403274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 97887843 97887843 + Silent SNP A A G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 OSBPL6 114880 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179253841 179253841 + Silent SNP C C G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 PAPSS2 9060 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 89473886 89473886 + Missense_Mutation SNP A A G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 PCDHA11 56138 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 140248769 140248769 + Silent SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 PPP1R16A 84988 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145722670 145722670 + Silent SNP C C T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 PRKAG2 51422 hgsc.bcm.edu;ucsc.edu 37 7 151265857 151265862 + In_Frame_Del DEL CCACTG CCACTG - novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 CCACTG CCACTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 PSMB4 5692 hgsc.bcm.edu;ucsc.edu 37 1 151372944 151372945 + Frame_Shift_Ins INS - - T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 RPGR 6103 broad.mit.edu;ucsc.edu 37 X 38182653 38182653 + Silent SNP G A A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 SCML1 6322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 17768309 17768309 + Missense_Mutation SNP G G T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 SIN3A 25942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 75682103 75682103 + Missense_Mutation SNP C C A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 SLC22A16 85413 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 110763747 110763747 + Missense_Mutation SNP G G T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 SLITRK3 22865 broad.mit.edu;hgsc.bcm.edu 37 3 164907318 164907318 + Missense_Mutation SNP A A G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 SNHG1 23642 broad.mit.edu;hgsc.bcm.edu 37 11 62621378 62621378 + RNA SNP T T G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 SPRYD5 0 broad.mit.edu;ucsc.edu 37 11 55653066 55653066 + Missense_Mutation SNP A T T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 STAG3 10734 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99811404 99811404 + Missense_Mutation SNP T T C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 SYNJ1 8867 broad.mit.edu;hgsc.bcm.edu 37 21 34066598 34066598 + Silent SNP A A T novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 TBC1D15 64786 broad.mit.edu;hgsc.bcm.edu 37 12 72274276 72274276 + Missense_Mutation SNP C C G novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 VHL 7428 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 10188240 10188240 + Missense_Mutation SNP T T A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 VIL1 7429 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 219296898 219296898 + Missense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 YME1L1 10730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 27437878 27437878 + Missense_Mutation SNP T T C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 ZNF711 7552 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 84510342 84510342 + Missense_Mutation SNP G G A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 ZNF789 285989 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99084910 99084910 + Silent SNP T T C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 KIAA1841 84542 broad.mit.edu 37 2 61336340 61336340 + Missense_Mutation SNP G C C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 MLL4 9757 broad.mit.edu 37 19 36224005 36224006 + Frame_Shift_Ins INS - C C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 SLIT2 9353 broad.mit.edu 37 4 20490577 20490577 + Silent SNP G A A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 Unknown 0 broad.mit.edu 37 16 70268158 70268158 + RNA SNP A C C novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 USHBP1 83878 broad.mit.edu 37 19 17370531 17370531 + Missense_Mutation SNP G T T rs150046287 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056 ZNF833 0 broad.mit.edu 37 19 11762663 11762663 + RNA SNP G A A novel TCGA-B0-5088-01A-01D-1462-08 TCGA-B0-5088-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx e56245d6-c681-44e0-9eb2-504bee3e1b32 2543d48c-413b-4ff9-8dc3-125a19829056