Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID AARS2 57505 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 44270802 44270802 + Splice_Site SNP C C A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 ACPL2 92370 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 141011820 141011820 + Nonsense_Mutation SNP G G T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 ACTR8 93973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53908276 53908276 + Silent SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 ACTR8 93973 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 53908279 53908279 + Missense_Mutation SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 BTBD17 388419 broad.mit.edu;hgsc.bcm.edu 37 17 72353257 72353257 + Missense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66479404 66479404 + Missense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 CDCA7 83879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 174223477 174223477 + Missense_Mutation SNP T T A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 CDK3 1018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 73998146 73998146 + Missense_Mutation SNP T T A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 CLEC2D 29121 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 9822375 9822375 + Missense_Mutation SNP A A C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 CLN8 2055 broad.mit.edu;ucsc.edu 37 8 1728427 1728427 + Silent SNP C G G rs145929862 alternate_allele TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 COL4A2 1284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 111102707 111102707 + Silent SNP C C A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 CRTC1 23373 broad.mit.edu;hgsc.bcm.edu 37 19 18886547 18886547 + Missense_Mutation SNP C C A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 DCAF8L2 347442 broad.mit.edu;ucsc.edu 37 X 27766433 27766433 + Missense_Mutation SNP G T T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 DDX3X 1654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 41203496 41203496 + Missense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 DDX53 168400 broad.mit.edu;hgsc.bcm.edu 37 X 23018221 23018221 + Missense_Mutation SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 FNDC4 64838 broad.mit.edu;hgsc.bcm.edu 37 2 27716993 27716993 + Silent SNP A A G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 GABRG2 2566 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 161520982 161520982 + Nonsense_Mutation SNP G G T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 GNAI1 2770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 79764504 79764504 + Nonsense_Mutation SNP A A T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 GRAP2 9402 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 40343157 40343157 + Missense_Mutation SNP A A T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 GRHPR 9380 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 37424868 37424868 + Missense_Mutation SNP A A G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 GRINA 2907 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145066243 145066243 + Silent SNP A A T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 HNF4G 3174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 76456146 76456146 + Silent SNP A A G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 HUWE1 10075 broad.mit.edu;hgsc.bcm.edu 37 X 53674403 53674403 + Missense_Mutation SNP C C G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 IGSF1 3547 broad.mit.edu;ucsc.edu 37 X 130416649 130416649 + Missense_Mutation SNP C A A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 IL6ST 3572 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 55259325 55259325 + Missense_Mutation SNP T T C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 JARID2 3720 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 15496611 15496611 + Missense_Mutation SNP A A T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 KCNC1 3746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 17793895 17793895 + Silent SNP T T C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10421772 10421772 + Missense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 LAMB2 3913 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 49169156 49169156 + Missense_Mutation SNP T T A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 LPAR4 2846 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 78011131 78011131 + Missense_Mutation SNP G G T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 LRRC23 10233 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7023184 7023184 + Silent SNP C C A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 MAP3K15 389840 hgsc.bcm.edu;ucsc.edu 37 X 19379616 19379617 + Frame_Shift_Del INS - - A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 MAST4 375449 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66448561 66448561 + Missense_Mutation SNP C C G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 MCEE 84693 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 71351338 71351338 + Nonsense_Mutation SNP C C A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 MKRN3 7681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 23811752 23811752 + Missense_Mutation SNP C C A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 MYO15A 51168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18049342 18049342 + Missense_Mutation SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 NFATC2 4773 broad.mit.edu;ucsc.edu 37 20 50092197 50092197 + Frame_Shift_Del DEL G - - novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 NMD3 51068 hgsc.bcm.edu;ucsc.edu 37 3 160945064 160945064 + Frame_Shift_Del DEL A A - novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 OGT 8473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70784541 70784541 + Missense_Mutation SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 OR52J3 119679 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 5068545 5068545 + Nonsense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PAPD5 64282 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 50257298 50257298 + Missense_Mutation SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52643828 52643828 + Nonsense_Mutation SNP T T A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PCDHB7 56129 broad.mit.edu;hgsc.bcm.edu 37 5 140553926 140553926 + Missense_Mutation SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PHF16 9767 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 46917973 46917973 + Missense_Mutation SNP A A C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PHKA1 5255 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 71831023 71831023 + Missense_Mutation SNP C C A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PITPNM2 57605 broad.mit.edu;ucsc.edu 37 12 123488978 123488978 + Silent SNP C T T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PNPLA7 375775 broad.mit.edu;ucsc.edu 37 9 140379177 140379178 + Frame_Shift_Ins INS - A A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PRKG1 5592 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 53667290 53667290 + Missense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PRM3 58531 hgsc.bcm.edu 37 16 11367390 11367401 + In_Frame_Del DEL GCTGTGGCCTGG GCTGTGGCCTGG - novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 GCTGTGGCCTGG GCTGTGGCCTGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PRPF40B 25766 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50037528 50037528 + Missense_Mutation SNP A A G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PSTK 118672 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 124742525 124742525 + Nonsense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 PTPRU 10076 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 29611375 29611375 + Missense_Mutation SNP G G T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 RAB7A 7879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 128516883 128516883 + Missense_Mutation SNP A A T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 RBM28 55131 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 127975595 127975595 + Splice_Site SNP A A C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 RNF186 54546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 20141319 20141319 + Silent SNP G G C rs138663359 alternate_allele TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 ROS1 6098 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 117681074 117681074 + Silent SNP T T C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 RPS13 6207 broad.mit.edu;hgsc.bcm.edu 37 11 17098784 17098784 + Missense_Mutation SNP A A C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 RUFY2 55680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 70141061 70141061 + Silent SNP A A G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 SH3PXD2B 285590 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 171789871 171789871 + Missense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 SLC4A2 6522 hgsc.bcm.edu;ucsc.edu 37 7 150771368 150771369 + Frame_Shift_Ins INS - - T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 SLC6A7 6534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 149583511 149583511 + Missense_Mutation SNP G G C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 SPHK2 56848 broad.mit.edu;hgsc.bcm.edu 37 19 49129225 49129225 + Silent SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 SPRED1 161742 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 38616982 38616982 + Missense_Mutation SNP A A G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 STARD6 147323 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 51863590 51863590 + Missense_Mutation SNP G G T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 TACC1 6867 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 38677391 38677391 + Missense_Mutation SNP A A C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 TGM3 7053 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2312884 2312884 + Missense_Mutation SNP A A G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A A G A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 THBS2 7058 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 169648851 169648851 + Silent SNP G G C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 TIPARP 25976 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 156421359 156421359 + Missense_Mutation SNP T T A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 TMPRSS9 360200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 2422196 2422196 + Silent SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 TTLL1 25809 broad.mit.edu;ucsc.edu 37 22 43464519 43464519 + Missense_Mutation SNP T G G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 179435668 179435668 + Missense_Mutation SNP G G C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G G C G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 VAC14 55697 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 70816984 70816984 + Missense_Mutation SNP T T C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 VHL 7428 broad.mit.edu;ucsc.edu 37 3 10183745 10183746 + Frame_Shift_Ins INS - CC CC novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 - - - CC - - Unknown Valid Somatic Phase_I WXS Illumina Miseq Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 VSIG2 23584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 124619711 124619711 + Missense_Mutation SNP C C T novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 ZFHX4 79776 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 77617698 77617698 + Missense_Mutation SNP G G A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 BZW1 9689 broad.mit.edu 37 2 201684787 201684787 + Missense_Mutation SNP A C C novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 KRT1 3848 broad.mit.edu 37 12 53069236 53069256 + In_Frame_Del DEL TAGCTGCTACCTCCGGAGCCA - - novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 TAGCTGCTACCTCCGGAGCCA TAGCTGCTACCTCCGGAGCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 LILRP2 79166 broad.mit.edu 37 19 55221840 55221840 + RNA SNP A G G novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2 TCERG1 10915 broad.mit.edu 37 5 145878250 145878250 + Splice_Site SNP G A A novel TCGA-B0-5085-01A-01D-1462-08 TCGA-B0-5085-11A-01D-1462-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a36e36ee-48f3-4674-a9f3-a121a09535c5 d83d2175-b165-4ace-82d4-c72083ba8bf2