Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABCA13 154664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 48315960 48315961 + Frame_Shift_Ins INS - - A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ACVR1C 130399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 158412667 158412667 + Missense_Mutation SNP A A G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 AHNAK2 113146 broad.mit.edu;ucsc.edu 37 14 105420074 105420074 + Missense_Mutation SNP C T T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 AKAP2 11217 hgsc.bcm.edu 37 9 112900482 112900483 + Frame_Shift_Ins INS - - C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ARL15 54622 hgsc.bcm.edu;ucsc.edu 37 5 53409047 53409047 + Frame_Shift_Del DEL A A - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ARL15 54622 hgsc.bcm.edu;ucsc.edu 37 5 53409049 53409049 + Frame_Shift_Del DEL C C - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ARMC3 219681 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 23321851 23321851 + Missense_Mutation SNP G G C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ARMC6 93436 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19166161 19166161 + Missense_Mutation SNP G G C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ARMCX2 9823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 100912452 100912452 + Silent SNP G G A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ASCC1 51008 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 73912709 73912709 + Missense_Mutation SNP C C A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ATP12A 479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25266644 25266644 + Silent SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 BRF1 2972 hgsc.bcm.edu;ucsc.edu 37 14 105684036 105684049 + Frame_Shift_Del DEL ATTGATCTTGCTGG ATTGATCTTGCTGG - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 ATTGATCTTGCTGG ATTGATCTTGCTGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 C5orf13 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 111310973 111310973 + Frame_Shift_Del DEL A A - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 C7orf10 79783 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 40900017 40900017 + Missense_Mutation SNP A A G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 C7orf49 78996 broad.mit.edu;ucsc.edu 37 7 134853617 134853617 + Missense_Mutation SNP G T T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 CCDC42 146849 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 8638483 8638483 + Missense_Mutation SNP C C A rs147736220 byfrequency;alternate_allele TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 CCNE1 898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 30303636 30303636 + Missense_Mutation SNP G G C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 CCNE1 898 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 30303637 30303637 + Missense_Mutation SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 CHST1 8534 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 45671655 45671655 + Frame_Shift_Del DEL G G - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 CLNS1A 1207 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 77348740 77348742 + In_Frame_Del DEL AAA AAA - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 AAA AAA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 CYP2R1 120227 hgsc.bcm.edu 37 11 14913615 14913616 + Frame_Shift_Ins INS - - G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 DCAF11 80344 hgsc.bcm.edu;ucsc.edu 37 14 24590696 24590697 + Frame_Shift_Ins INS - - AC novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 DDX6 1656 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118635936 118635937 + Frame_Shift_Ins INS - - A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 DNAH17 8632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 76491993 76491993 + Missense_Mutation SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 EFTUD2 9343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 42936450 42936450 + Missense_Mutation SNP T T C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 F8 2157 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 154194857 154194857 + Missense_Mutation SNP G G A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 FAM120A 23196 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96318810 96318810 + Missense_Mutation SNP C C G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 FAM200A 221786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99144587 99144587 + Missense_Mutation SNP A A C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 FAM200A 221786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 99144589 99144589 + Missense_Mutation SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 FCAR 2204 broad.mit.edu;hgsc.bcm.edu 37 19 55396904 55396904 + Missense_Mutation SNP C C T rs143972917 TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 FPGT-TNNI3K 100526835 broad.mit.edu;hgsc.bcm.edu 37 1 74819043 74819043 + Silent SNP T T A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 GPR27 2850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 71804019 71804019 + Silent SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 GSTA3 2940 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 52764813 52764813 + Silent SNP T T C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 HECTD3 79654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 45471468 45471468 + Missense_Mutation SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 IFI30 10437 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 18286174 18286174 + Silent SNP G G A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 IL1F9 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 113736198 113736198 + Splice_Site SNP T T A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 KANK3 256949 hgsc.bcm.edu 37 19 8389893 8389895 + In_Frame_Del DEL TCC TCC - rs150055032 bycluster;by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 TCC TCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67049417 67049417 + Missense_Mutation SNP C C G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67049444 67049444 + Missense_Mutation SNP C C G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 KBTBD8 84541 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 67049590 67049590 + Missense_Mutation SNP C C G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 KDM5C 8242 hgsc.bcm.edu 37 X 53222460 53222460 + Missense_Mutation SNP G G A novel TCGA-B0-4710-01A-01W-1528-10 TCGA-B0-4710-11A-02W-1528-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 0a4d83b9-b7a5-4ab4-b9ca-92627f361b07 d71c3e47-a16b-4744-94f8-301369d6774b KIAA0368 23392 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 114159361 114159361 + Missense_Mutation SNP C C A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 KIF1B 23095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10318553 10318553 + Silent SNP C C T rs141998703 bycluster;byfrequency;by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 LGALS9B 284194 hgsc.bcm.edu 37 17 20370782 20370783 + Frame_Shift_Ins INS - - TC novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 LILRA2 11027 broad.mit.edu;ucsc.edu 37 19 55085835 55085835 + Silent SNP C A A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MAGEA10 4109 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 151303633 151303633 + Missense_Mutation SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MAGEC1 9947 broad.mit.edu;ucsc.edu 37 X 140996270 140996270 + Missense_Mutation SNP G C C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MAOA 4128 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 43571201 43571201 + Missense_Mutation SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MBLAC2 153364 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 89757120 89757120 + Missense_Mutation SNP A A C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 METAP1 23173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99955422 99955422 + Nonsense_Mutation SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MGAT4A 11320 broad.mit.edu;ucsc.edu 37 2 99272830 99272830 + Missense_Mutation SNP G A A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MOGAT2 80168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 75439854 75439854 + Missense_Mutation SNP T T C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MTNR1B 4544 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 92714908 92714908 + Silent SNP G G C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MYH14 79784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 50812921 50812921 + Silent SNP C C G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MYO19 80179 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 34857066 34857066 + Missense_Mutation SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MYT1L 23040 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 1927018 1927018 + Frame_Shift_Del DEL A A - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 NLRP5 126206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 56552314 56552314 + Missense_Mutation SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 NPHP1 4867 hgsc.bcm.edu;ucsc.edu 37 2 110922107 110922107 + Frame_Shift_Del DEL G G - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 NR6A1 2649 hgsc.bcm.edu;ucsc.edu 37 9 127298262 127298262 + Frame_Shift_Del DEL T T - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 OR5T3 390154 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 56020415 56020415 + Missense_Mutation SNP C C A rs149435695 alternate_allele TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 PABPC5 140886 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 90691460 90691460 + Missense_Mutation SNP A A C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 PCDHGB4 8641 hgsc.bcm.edu 37 5 140767492 140767497 + In_Frame_Del DEL TGCCAG TGCCAG - rs145222727 TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 TGCCAG TGCCAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 PEX1 5189 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 92136429 92136429 + Missense_Mutation SNP G G C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 PLCB4 5332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 9382178 9382178 + Missense_Mutation SNP A A C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 PLEKHA5 54477 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 19436378 19436378 + Missense_Mutation SNP G G C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 POGZ 23126 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151400320 151400320 + Missense_Mutation SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 PRKRA 8575 hgsc.bcm.edu 37 2 179315735 179315736 + Frame_Shift_Del DEL GC GC - rs141354030 by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 PRLR 5618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 35084671 35084671 + Missense_Mutation SNP A A G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 PRSS3 5646 hgsc.bcm.edu 37 9 33799094 33799094 + Frame_Shift_Del DEL T T - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 RPA4 29935 broad.mit.edu;hgsc.bcm.edu 37 X 96139817 96139817 + Nonsense_Mutation SNP A A T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 SCN9A 6335 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 167055543 167055543 + Missense_Mutation SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G G T G G Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 SCO1 6341 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 10596183 10596183 + Missense_Mutation SNP C C G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 SETD2 29072 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 47143045 47143045 + Missense_Mutation SNP A A T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 TCP11 6954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 35087006 35087006 + Silent SNP A A T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 TP53 7157 broad.mit.edu;ucsc.edu 37 17 7578211 7578211 + Missense_Mutation SNP C T T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 TRHDE 29953 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 73012774 73012774 + Missense_Mutation SNP C C A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 TRIM24 8805 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 138265317 138265317 + Missense_Mutation SNP A A C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 TRIP12 9320 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 230675664 230675665 + Frame_Shift_Ins INS - - T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 TTC24 164118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156552877 156552877 + Silent SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ULK3 25989 hgsc.bcm.edu 37 15 75134624 75134624 + Frame_Shift_Del DEL A A - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 UPK3B 80761 broad.mit.edu;hgsc.bcm.edu 37 7 76140064 76140064 + Missense_Mutation SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 USH2A 7399 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 216219777 216219777 + Silent SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 VHL 7428 hgsc.bcm.edu 37 3 10183776 10183776 + Missense_Mutation SNP G G C novel TCGA-B0-4710-01A-01W-1528-10 TCGA-B0-4710-11A-02W-1528-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina MiSeq 0a4d83b9-b7a5-4ab4-b9ca-92627f361b07 d71c3e47-a16b-4744-94f8-301369d6774b WDR18 57418 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 994289 994289 + Silent SNP C C T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ZMYM3 9203 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 70467240 70467240 + Missense_Mutation SNP G G T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ZNF221 7638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 44470618 44470618 + Silent SNP A A C novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ZNF22 7570 broad.mit.edu;ucsc.edu 37 10 45499247 45499247 + Missense_Mutation SNP G T T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ZNF607 84775 hgsc.bcm.edu;ucsc.edu 37 19 38189521 38189521 + Frame_Shift_Del DEL G G - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ZYG11B 79699 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 53245564 53245564 + Missense_Mutation SNP C C A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 CDH23 64072 broad.mit.edu 37 10 73442209 73442209 + Silent SNP C T T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 CHRD 8646 broad.mit.edu 37 3 184100196 184100196 + Missense_Mutation SNP C T T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 DKFZp686A1627 0 broad.mit.edu 37 13 19626616 19626616 + RNA SNP G T T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 FMN2 56776 broad.mit.edu 37 1 240370978 240370978 + Missense_Mutation SNP C A A novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 JAG2 3714 broad.mit.edu 37 14 105618587 105618587 + Missense_Mutation SNP A G G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MUC4 4585 broad.mit.edu 37 3 195505867 195505867 + Missense_Mutation SNP A T T novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MUC4 4585 broad.mit.edu 37 3 195506746 195506746 + Missense_Mutation SNP G A A rs192522651 by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 MUC4 4585 broad.mit.edu 37 3 195506775 195506775 + Silent SNP G A A rs79609066 bycluster;byfrequency;by1000genomes TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 SLC16A11 162515 broad.mit.edu 37 17 6946682 6946682 + Frame_Shift_Del DEL G - - novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 YY1AP1 55249 broad.mit.edu 37 1 155642422 155642422 + Missense_Mutation SNP A G G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81 ZBTB4 57659 broad.mit.edu 37 17 7369782 7369782 + Silent SNP A G G novel TCGA-B0-4710-01A-01D-1501-10 TCGA-B0-4710-11A-02D-1501-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 4ab8d170-2b88-47a1-9a56-ec0007652446 a1ec1a7d-b4b7-42f9-84eb-94a3d23b4d81