Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID BCO2 83875 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 112072899 112072899 + Missense_Mutation SNP G G C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e BHLHB9 80823 broad.mit.edu;hgsc.bcm.edu 37 X 102004560 102004560 + Missense_Mutation SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e C20orf94 0 broad.mit.edu;hgsc.bcm.edu 37 20 10603312 10603312 + Missense_Mutation SNP A A C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e C2orf78 388960 hgsc.bcm.edu 37 2 74043341 74043342 + Frame_Shift_Ins INS - - C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e C4orf31 0 broad.mit.edu;ucsc.edu 37 4 121958431 121958431 + Missense_Mutation SNP C A A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e C5orf42 65250 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 37168941 37168941 + Silent SNP T T C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e CD180 4064 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 66479407 66479407 + Silent SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e CDHR1 92211 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 85960393 85960393 + Missense_Mutation SNP G G T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e CHD7 55636 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 61763106 61763106 + Missense_Mutation SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e CNTNAP2 26047 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 147336210 147336210 + Nonsense_Mutation SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e DHX15 1665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 24572443 24572443 + Nonsense_Mutation SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e DHX15 1665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 24572444 24572444 + Missense_Mutation SNP C C T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e DRGX 644168 broad.mit.edu;ucsc.edu 37 10 50574424 50574424 + Missense_Mutation SNP C A A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e EBF1 1879 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158250251 158250251 + Silent SNP A A G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e EGF 1950 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 110909739 110909739 + Splice_Site SNP G G T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e EGFL6 25975 broad.mit.edu;hgsc.bcm.edu 37 X 13636139 13636139 + Missense_Mutation SNP A A T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e EXOC6 54536 hgsc.bcm.edu;ucsc.edu 37 10 94669364 94669364 + Missense_Mutation SNP A A C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e FBN1 2200 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 48764807 48764807 + Missense_Mutation SNP C C A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e FREM2 341640 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 39452971 39452971 + Missense_Mutation SNP A A G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e GAB4 128954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 17472966 17472966 + Missense_Mutation SNP C C G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e GGNBP2 79893 hgsc.bcm.edu;ucsc.edu 37 17 34913158 34913158 + Frame_Shift_Del DEL C C - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e HAP1 9001 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 39889026 39889026 + Missense_Mutation SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e HCFC1 3054 hgsc.bcm.edu 37 X 153222971 153222972 + Frame_Shift_Ins INS - - G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e HYOU1 10525 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 118916498 118916498 + Missense_Mutation SNP C C A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e IGLL1 3543 broad.mit.edu;ucsc.edu 37 22 23915501 23915501 + Silent SNP G A A rs1064418 bycluster;byfrequency TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e IL6 3569 hgsc.bcm.edu;ucsc.edu 37 7 22771126 22771126 + Silent SNP T T G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ITGB6 3694 broad.mit.edu;ucsc.edu 37 2 160983104 160983104 + Missense_Mutation SNP C A A rs143914557 TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ITSN2 50618 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 24469086 24469086 + Silent SNP A A G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e JMY 133746 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78573870 78573870 + Missense_Mutation SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e KDM5C 8242 hgsc.bcm.edu 37 X 53223905 53223905 + Missense_Mutation SNP C C T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e KIAA1751 85452 broad.mit.edu;ucsc.edu 37 1 1919956 1919956 + Missense_Mutation SNP C A A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e KIF22 3835 broad.mit.edu;hgsc.bcm.edu 37 16 29810383 29810383 + Frame_Shift_Del DEL A A - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e LONP1 9361 broad.mit.edu;hgsc.bcm.edu 37 19 5699170 5699170 + Missense_Mutation SNP A A T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e LONRF1 91694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 12592860 12592860 + Missense_Mutation SNP T T G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e LRP4 4038 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 46898361 46898361 + Missense_Mutation SNP T T G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e MLL2 8085 broad.mit.edu;hgsc.bcm.edu 37 12 49444844 49444844 + Nonsense_Mutation SNP G G T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e MSR1 4481 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 15977930 15977930 + Missense_Mutation SNP G G C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G G C G G Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e MTMR4 9110 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 56581545 56581546 + Frame_Shift_Ins INS - - GT novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e NBPF1 55672 broad.mit.edu;hgsc.bcm.edu 37 1 16913638 16913638 + Missense_Mutation SNP T T G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e OR10G4 390264 broad.mit.edu;hgsc.bcm.edu 37 11 123886795 123886795 + Nonsense_Mutation SNP C C T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e PCDHB3 56132 hgsc.bcm.edu 37 5 140481633 140481633 + Frame_Shift_Del DEL C C - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e PDE1B 5153 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 54967242 54967242 + Missense_Mutation SNP A A T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e POLD3 10714 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74340306 74340306 + Frame_Shift_Del DEL A A - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e PPARGC1B 133522 broad.mit.edu;hgsc.bcm.edu 37 5 149212567 149212567 + Missense_Mutation SNP C C T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e PRKD1 5587 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 30132916 30132916 + Missense_Mutation SNP C C T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e PTPN12 5782 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 77256021 77256021 + Splice_Site SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e PTPRC 5788 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 198723495 198723495 + Missense_Mutation SNP G G T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e RAB11FIP4 84440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29857420 29857420 + Missense_Mutation SNP A A G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e RAB39B 116442 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 154490261 154490261 + Missense_Mutation SNP C C T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e RASSF9 9182 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 86199472 86199472 + Nonsense_Mutation SNP C C A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e RBMXL1 494115 hgsc.bcm.edu 37 1 89449509 89449509 + Frame_Shift_Del DEL T T - rs71308872 alternate_allele TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ROBLD3 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 156025137 156025137 + Missense_Mutation SNP A A C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e RPGRIP1 57096 hgsc.bcm.edu;ucsc.edu 37 14 21793467 21793467 + Silent SNP G G A rs35207255 bycluster;by1000genomes TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e SGIP1 84251 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 67147913 67147913 + Frame_Shift_Del DEL T T - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e SGSM1 129049 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 25282686 25282686 + Missense_Mutation SNP A A C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e SHROOM1 134549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 132160424 132160424 + Missense_Mutation SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e SHROOM4 57477 hgsc.bcm.edu 37 X 50350758 50350759 + In_Frame_Ins INS - - TGCTGCTGCTGT novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e SIGLEC12 89858 hgsc.bcm.edu 37 19 52004791 52004792 + Frame_Shift_Ins INS - - C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e SLC17A3 10786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 25850134 25850134 + Silent SNP A A G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e SLCO2B1 11309 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 74876867 74876867 + Frame_Shift_Del DEL T T - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e STON2 85439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 81736986 81736986 + Missense_Mutation SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e STON2 85439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 81736987 81736987 + Missense_Mutation SNP C C T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e SYBU 55638 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 110587762 110587762 + Silent SNP G G A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e TDRD5 163589 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 179620176 179620176 + Missense_Mutation SNP G G C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e TMEM145 284339 hgsc.bcm.edu;ucsc.edu 37 19 42821885 42821886 + Frame_Shift_Ins INS - - AC novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e TMPRSS15 5651 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 21 19725219 19725219 + Splice_Site SNP C C A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e TPP2 7174 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 103275378 103275378 + Missense_Mutation SNP G G T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e UBLCP1 134510 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 158710292 158710292 + Missense_Mutation SNP A A C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 19499967 19499967 + Missense_Mutation SNP C C A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e UPK3A 7380 hgsc.bcm.edu 37 22 45691552 45691553 + Frame_Shift_Ins INS - - C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e USH2A 7399 hgsc.bcm.edu;ucsc.edu 37 1 215823997 215823998 + Frame_Shift_Ins INS - - T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e VHL 7428 hgsc.bcm.edu 37 3 10183746 10183746 + Frame_Shift_Del DEL C C - novel TCGA-AK-3430-01A-01W-1244-10 TCGA-AK-3430-10A-01W-1244-10 C C C - C C Unknown Valid Somatic Phase_I WXS PacBio . . Illumina MiSeq e06607ae-d7b1-4109-9e18-f42b3cc518e2 012aa7b4-8d61-4f85-9a3a-64cdb9f62ac0 WDR77 79084 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 111990200 111990200 + Splice_Site SNP T T A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ZCCHC17 51538 hgsc.bcm.edu;ucsc.edu 37 1 31836865 31836884 + Frame_Shift_Del DEL AATTTTCTTTTCAGGAGAAG AATTTTCTTTTCAGGAGAAG - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 AATTTTCTTTTCAGGAGAAG AATTTTCTTTTCAGGAGAAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ZFP91 80829 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 58381764 58381764 + Silent SNP A A G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ZMYND11 10771 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 225962 225962 + Silent SNP T T C novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ZNF343 79175 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 2464292 2464292 + Frame_Shift_Del DEL A A - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ZNF548 147694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 57910589 57910590 + Frame_Shift_Ins INS - - T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e ADAM6 8755 broad.mit.edu 37 14 106974586 106974586 + RNA SNP T G G novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e CYTH2 9266 broad.mit.edu 37 19 48977567 48977567 + Silent SNP C T T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e GNAS 2778 broad.mit.edu 37 20 57429460 57429460 + Silent SNP C A A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e HDAC10 83933 broad.mit.edu 37 22 50689480 50689480 + Translation_Start_Site SNP C A A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e KIR3DL3 100133046 broad.mit.edu 37 19 55239272 55239272 + Missense_Mutation SNP C T T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e LOC440354 440354 broad.mit.edu 37 16 30278810 30278811 + RNA INS - A A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e NKX2-2 4821 broad.mit.edu 37 20 21493005 21493005 + Frame_Shift_Del DEL G - - novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e NME2P1 283458 broad.mit.edu 37 12 120720247 120720247 + RNA SNP G A A novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e RRAD 6236 broad.mit.edu 37 16 66956073 66956073 + Missense_Mutation SNP G T T novel TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e TUBBP5 643224 broad.mit.edu 37 9 141071078 141071078 + Missense_Mutation SNP A G G rs71634627 TCGA-AK-3430-01A-01D-1251-10 TCGA-AK-3430-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx 9d9a311d-7ca1-4021-95dc-0d6716917938 239a2754-4a2e-48d1-89eb-3c91161fb67e