Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ADNP2 22850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 77894266 77894266 + Missense_Mutation SNP C C A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 ANGPT1 284 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 108334357 108334357 + Splice_Site SNP C C G novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 ATP12A 479 broad.mit.edu;ucsc.edu 37 13 25276072 25276072 + Splice_Site SNP G T T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 C11orf57 55216 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 111946306 111946306 + Missense_Mutation SNP G G A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 C9orf93 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 15777711 15777711 + Missense_Mutation SNP A A G novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 DBC1 1620 broad.mit.edu;hgsc.bcm.edu 37 9 121929960 121929960 + Missense_Mutation SNP T T A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 DDA1 79016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17425185 17425185 + Nonsense_Mutation SNP C C A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 DEM1 0 broad.mit.edu;ucsc.edu 37 1 40980259 40980259 + Missense_Mutation SNP T G G novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 ELN 2006 hgsc.bcm.edu 37 7 73462497 73462502 + In_Frame_Del DEL TGCAGC TGCAGC - novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 TGCAGC TGCAGC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 FAM3A 60343 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 153736831 153736831 + Silent SNP C C T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 FLT3 2322 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 28608527 28608527 + Missense_Mutation SNP G G T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 HERC2 8924 broad.mit.edu;ucsc.edu 37 15 28446698 28446698 + Silent SNP A G G novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 METT10D 0 broad.mit.edu;hgsc.bcm.edu 37 17 2323872 2323872 + Missense_Mutation SNP G G A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 MTOR 2475 broad.mit.edu;hgsc.bcm.edu 37 1 11319454 11319454 + Missense_Mutation SNP C C G novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C C G C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 MUC4 4585 hgsc.bcm.edu 37 3 195513694 195513694 + Missense_Mutation SNP G G A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 NAB1 4664 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 191524231 191524231 + Missense_Mutation SNP C C T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 NCOR2 9612 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 124841254 124841254 + Missense_Mutation SNP G G A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 NOL8 55035 hgsc.bcm.edu;ucsc.edu 37 9 95069939 95069939 + RNA SNP T T C novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 NOP2 4839 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 6669891 6669891 + Silent SNP G G T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 PCK1 5105 hgsc.bcm.edu;ucsc.edu 37 20 56138155 56138157 + In_Frame_Del DEL ATC ATC - novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 ATC ATC ATC - ATC ATC Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82580448 82580448 + Silent SNP C C T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 PRDM2 7799 hgsc.bcm.edu 37 1 14075880 14075880 + Silent SNP C C T rs75417771 bycluster;byfrequency;by1000genomes TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 PRDM2 7799 hgsc.bcm.edu 37 1 14105137 14105139 + In_Frame_Del DEL GAT GAT - novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 GAT GAT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 RECQL4 9401 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 145737152 145737152 + Missense_Mutation SNP C C A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 RP1L1 94137 hgsc.bcm.edu 37 8 10466026 10466026 + Missense_Mutation SNP T T G novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 RUNDC2A 0 broad.mit.edu;ucsc.edu 37 16 12142415 12142415 + Missense_Mutation SNP T C C novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 SGK1 6446 hgsc.bcm.edu;ucsc.edu 37 6 134495942 134495943 + Frame_Shift_Del DEL TC TC - novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 TC TC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 SIGLEC10 89790 hgsc.bcm.edu 37 19 51919240 51919240 + Silent SNP C C T rs79484306 TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 SYNM 23336 broad.mit.edu;ucsc.edu 37 15 99670374 99670374 + Silent SNP T C C novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 TRPC7 57113 broad.mit.edu;hgsc.bcm.edu 37 5 135692564 135692564 + Missense_Mutation SNP G G A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 UBR1 197131 broad.mit.edu;ucsc.edu 37 15 43299453 43299453 + Missense_Mutation SNP A C C novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 XRN1 54464 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 142037709 142037709 + Silent SNP A A G novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 ZNF285 26974 hgsc.bcm.edu 37 19 44891003 44891003 + Silent SNP G G A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 DVL1 1855 broad.mit.edu 37 1 1275427 1275427 + Missense_Mutation SNP C A A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 FAM182A 284800 broad.mit.edu 37 20 26063752 26063752 + RNA SNP T C C rs78544920 bycluster TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 GATA2 2624 broad.mit.edu 37 3 128205185 128205185 + Frame_Shift_Del DEL G - - novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 HTA 283902 broad.mit.edu 37 16 73127625 73127625 + RNA SNP A T T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 LOC442421 0 broad.mit.edu 37 9 66499764 66499764 + Silent SNP C T T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 LRRC8E 80131 broad.mit.edu 37 19 7964517 7964517 + Silent SNP C T T novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 NBPF10 100132406 broad.mit.edu 37 1 145302696 145302696 + Silent SNP C G G rs74428101 TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 PRAMEF6 440561 broad.mit.edu 37 1 13001258 13001258 + Missense_Mutation SNP C T T rs3927874 TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 RNF39 80352 broad.mit.edu 37 6 30040952 30040952 + Frame_Shift_Del DEL T - - novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 SETD2 29072 broad.mit.edu 37 3 47058513 47058513 + 3'UTR SNP G A A novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 G G G A G G Unknown Valid Somatic Phase_I WXS PGM Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 Unknown 0 broad.mit.edu 37 15 30771310 30771310 + RNA SNP A C C novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 UQCRFS1 7386 broad.mit.edu 37 19 29699033 29699033 + Missense_Mutation SNP T C C novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821 ZNF43 7594 broad.mit.edu 37 19 21992038 21992038 + Silent SNP A G G novel TCGA-AK-3429-01A-02D-1386-10 TCGA-AK-3429-10A-01D-1251-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx fa51dce9-2101-4af7-9280-4bad56b6848e e287ef35-f81a-4d6f-a4d7-13871b8bf821