Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ABLIM1 3983 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 116201492 116201492 + Missense_Mutation SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 AHNAK2 113146 hgsc.bcm.edu 37 14 105415541 105415541 + Missense_Mutation SNP T T C rs150617757 by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 AIRE 326 hgsc.bcm.edu 37 21 45711063 45711075 + Frame_Shift_Del DEL GCCTGTCCCCTCC GCCTGTCCCCTCC - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 GCCTGTCCCCTCC GCCTGTCCCCTCC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 AMAC1 0 broad.mit.edu;hgsc.bcm.edu 37 17 33520557 33520557 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 ANO6 196527 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 45810629 45810629 + Missense_Mutation SNP A A G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 ASH1L 55870 broad.mit.edu;hgsc.bcm.edu 37 1 155491017 155491017 + Silent SNP T T C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 ATP12A 479 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 25272913 25272913 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 BCL3 602 hgsc.bcm.edu;ucsc.edu 37 19 45262806 45262807 + Frame_Shift_Del DEL CT CT - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 BECN1 8678 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 40970428 40970428 + Missense_Mutation SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 BMPR2 659 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 203421005 203421005 + Nonsense_Mutation SNP C C T rs137852748 TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 BTBD7 55727 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 93761005 93761005 + Missense_Mutation SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 BTN1A1 696 hgsc.bcm.edu 37 6 26509395 26509395 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 C2orf55 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 99448880 99448880 + Silent SNP G G A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 C4orf37 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 99049685 99049685 + Missense_Mutation SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 CCNL1 57018 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 156867954 156867954 + Frame_Shift_Del DEL G G - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 CHIT1 1118 hgsc.bcm.edu 37 1 203188855 203188856 + Frame_Shift_Ins INS - - G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 CMYA5 202333 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 79031741 79031741 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 COL6A1 1291 hgsc.bcm.edu;ucsc.edu 37 21 47402547 47402549 + Frame_Shift_Del DEL GAC GAC - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 GAC GAC . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 COL7A1 1294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 48607732 48607732 + Silent SNP G G A rs142651194 byfrequency TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 CPNE7 27132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 89657453 89657453 + Missense_Mutation SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 CYP8B1 1582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 42915969 42915969 + Missense_Mutation SNP A A T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 DCHS2 54798 hgsc.bcm.edu 37 4 155312411 155312411 + Silent SNP G G A rs62331900 bycluster;byfrequency;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 DNAH9 1770 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 11650990 11650990 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 DTNA 1837 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 32405233 32405233 + Missense_Mutation SNP A A T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 EDA 1896 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 69255287 69255287 + Missense_Mutation SNP G G T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 ENAM 10117 hgsc.bcm.edu;ucsc.edu 37 4 71500242 71500242 + Frame_Shift_Del DEL C C - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 FAM120AOS 158293 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 96209937 96209937 + Missense_Mutation SNP T T G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 FASTKD1 79675 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 170416921 170416921 + Missense_Mutation SNP A A G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 FUT6 2528 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5832203 5832203 + Missense_Mutation SNP G G A rs111589452 byfrequency TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 GABBR1 2550 broad.mit.edu;hgsc.bcm.edu 37 6 29573438 29573438 + Missense_Mutation SNP G G T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 GLTPD1 80772 hgsc.bcm.edu;ucsc.edu 37 1 1262701 1262701 + Frame_Shift_Del DEL G G - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 GPM6A 2823 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 176622807 176622807 + Missense_Mutation SNP G G A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 GRIK3 2899 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 37335385 37335385 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 HAUS6 54801 hgsc.bcm.edu 37 9 19063108 19063108 + Silent SNP T T C rs61740790 byfrequency TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 HECTD1 25831 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 31576011 31576011 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 IFT122 55764 hgsc.bcm.edu 37 3 129233285 129233286 + Frame_Shift_Ins INS - - G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 IRS1 3667 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 227662870 227662870 + Silent SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 ITGB1BP1 9270 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 9548243 9548243 + Missense_Mutation SNP T T C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 KIF15 56992 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 44816791 44816791 + Silent SNP T T C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 KIF16B 55614 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 16509021 16509021 + Missense_Mutation SNP A A C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 L1TD1 54596 hgsc.bcm.edu 37 1 62676248 62676251 + Frame_Shift_Del DEL AACT AACT - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 AACT AACT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 LAMA2 3908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 129799907 129799907 + Silent SNP T T C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 LRFN5 145581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 42356025 42356025 + Missense_Mutation SNP T T G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 LSM7 51690 broad.mit.edu;hgsc.bcm.edu 37 19 2321719 2321719 + Missense_Mutation SNP T T A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 MAP1A 4130 hgsc.bcm.edu 37 15 43816122 43816123 + Frame_Shift_Ins INS - - G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 MOCS1 4337 hgsc.bcm.edu 37 6 39895285 39895285 + Silent SNP G G T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 MS4A7 58475 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 60150630 60150630 + Missense_Mutation SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 MUC17 140453 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 100685938 100685938 + Missense_Mutation SNP G G T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G G T G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 MYCBP2 23077 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 77835374 77835374 + Missense_Mutation SNP A A T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 NBN 4683 broad.mit.edu;ucsc.edu 37 8 90955480 90955481 + Splice_Site DEL CC - - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 CC CC . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 NETO1 81832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 70417575 70417575 + Silent SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 NLRP8 126205 hgsc.bcm.edu;ucsc.edu 37 19 56487556 56487557 + Frame_Shift_Ins INS - - A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 OR4P4 81300 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 55405910 55405910 + Missense_Mutation SNP T T C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 OR7D2 162998 hgsc.bcm.edu;ucsc.edu 37 19 9297034 9297034 + Frame_Shift_Del DEL T T - novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PBRM1 55193 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52651419 52651419 + Nonsense_Mutation SNP A A T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PCDHGA11 56105 broad.mit.edu;hgsc.bcm.edu 37 5 140802703 140802703 + Missense_Mutation SNP G G C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PCLO 27445 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 82430893 82430893 + Missense_Mutation SNP T T A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PCNXL2 80003 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 233386509 233386509 + Missense_Mutation SNP T T C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PEX5 5830 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7360264 7360264 + Missense_Mutation SNP T T G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PLA2G7 7941 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 46684241 46684241 + Missense_Mutation SNP G G C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PNPLA6 10908 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 7605595 7605595 + Missense_Mutation SNP C C G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PRELP 5549 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203452939 203452939 + Silent SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 RBM33 155435 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 155473515 155473515 + Silent SNP A A T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 RGL2 5863 broad.mit.edu;hgsc.bcm.edu 37 6 33259865 33259865 + RNA SNP A A G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 RNF180 285671 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 63509694 63509694 + Missense_Mutation SNP G G T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 RORA 6095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 60789779 60789779 + Nonsense_Mutation SNP G G A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 SAMD14 201191 broad.mit.edu;ucsc.edu 37 17 48195543 48195543 + Silent SNP C T T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 SKA1 220134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47906545 47906545 + Silent SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 SPAG16 79582 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 214239769 214239769 + Missense_Mutation SNP G G A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 SPG11 80208 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 44858475 44858475 + Silent SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 SPTY2D1 144108 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 18636763 18636763 + Missense_Mutation SNP G G A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 TBX3 6926 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 115117393 115117393 + Silent SNP A A G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 TMEM145 284339 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 42820894 42820894 + Splice_Site SNP T T C novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 TNRC18 84629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5391579 5391579 + Missense_Mutation SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 TNRC18 84629 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 5391580 5391580 + Missense_Mutation SNP C C A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 TRPC4 7223 broad.mit.edu;ucsc.edu 37 13 38320157 38320157 + Silent SNP G T T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 TTC17 55761 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 43429097 43429097 + Silent SNP A A G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 VPS13C 54832 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 62241747 62241747 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 WDR35 57539 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 20162080 20162080 + Silent SNP G G A rs142103808 TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 ZDHHC2 51201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 17067943 17067943 + Missense_Mutation SNP C C T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 ABCA11P 79963 broad.mit.edu 37 4 420664 420664 + Missense_Mutation SNP G T T rs1053401 bycluster;byfrequency;bysubmitter;by1000genomes TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 CROCCL1 0 broad.mit.edu 37 1 16946434 16946434 + RNA SNP C T T rs367060 by2hit2allele TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 CROCCL1 0 broad.mit.edu 37 1 16946438 16946438 + RNA SNP G A A rs28392876 bycluster;byfrequency TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 FAM50B 26240 broad.mit.edu 37 6 3850384 3850384 + Silent SNP C T T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 LOC387646 0 broad.mit.edu 37 10 27538014 27538014 + Missense_Mutation SNP G T T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 LRRC37B 114659 broad.mit.edu 37 17 30357718 30357718 + Missense_Mutation SNP T G G novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 NYX 60506 broad.mit.edu 37 X 41307152 41307152 + Nonsense_Mutation SNP C T T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 PBX2 5089 broad.mit.edu 37 6 32156550 32156550 + Missense_Mutation SNP C T T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 TNRC18 84629 broad.mit.edu 37 7 5427483 5427483 + Missense_Mutation SNP G T T novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 Unknown 0 broad.mit.edu 37 15 84946555 84946556 + RNA INS - T T rs71453238 alternate_allele TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85 Unknown 0 broad.mit.edu 37 9 68413570 68413570 + RNA SNP G A A novel TCGA-A3-3372-01A-01D-0966-08 TCGA-A3-3372-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx f9f50073-a1d3-4c52-be78-529bd05cbce4 eabe41f2-bf96-48bd-98c1-9a001b92bf85