Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACO1 48 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 32433772 32433772 + Missense_Mutation SNP T T A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 AGAP4 119016 hgsc.bcm.edu 37 10 46342585 46342585 + Frame_Shift_Del DEL C C - novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 AHSA2 130872 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 61413601 61413601 + Missense_Mutation SNP C C G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ALLC 55821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 3727534 3727534 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ANK2 287 broad.mit.edu;ucsc.edu 37 4 114213643 114213643 + Silent SNP T C C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T T C T T Unknown Valid Somatic Phase_I WXS 454 Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ARHGAP39 80728 hgsc.bcm.edu 37 8 145773342 145773344 + In_Frame_Del DEL CTG CTG - rs138155129 bycluster;by1000genomes TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 CTG CTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ASH1L 55870 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 155450216 155450216 + Silent SNP G G C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ATAD5 79915 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 29161396 29161396 + Silent SNP G G T rs114289357 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ATP7B 540 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 52518307 52518307 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 B3GALTL 145173 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 31903770 31903770 + Missense_Mutation SNP C C A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 C12orf35 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 32137779 32137779 + Missense_Mutation SNP T T G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 C1orf84 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 43868851 43868851 + Missense_Mutation SNP G G A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 C1S 716 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 7174353 7174353 + Missense_Mutation SNP G G A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 C6orf204 0 hgsc.bcm.edu 37 6 118812811 118812813 + In_Frame_Del DEL TGT TGT - rs71866282 bycluster;by1000genomes TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 TGT TGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 CC2D2A 57545 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 15556749 15556749 + Silent SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 CCDC24 149473 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44461642 44461642 + Missense_Mutation SNP T T A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 CDH11 1009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 65038653 65038653 + Silent SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 CHD1 1105 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 98228309 98228309 + Silent SNP T T C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 CNNM4 26504 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 97475200 97475200 + Silent SNP T T G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 DNAJB4 11080 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 78470926 78470926 + Missense_Mutation SNP A A T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ELMO1 9844 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 7 37262227 37262227 + Missense_Mutation SNP C C G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ERC1 23085 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 1299182 1299182 + Missense_Mutation SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 EVC 2121 broad.mit.edu;hgsc.bcm.edu 37 4 5733355 5733355 + Silent SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 FAM5B 57795 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 177249921 177249921 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 GPR98 84059 broad.mit.edu;hgsc.bcm.edu 37 5 90079095 90079095 + Silent SNP G G A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 GPRC5C 55890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 72443073 72443073 + Missense_Mutation SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 HLA-DPB1 3115 hgsc.bcm.edu 37 6 33054014 33054014 + Frame_Shift_Del DEL A A - rs142167543 bycluster;by1000genomes TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 HS1BP3 64342 broad.mit.edu;ucsc.edu 37 2 20823713 20823713 + Missense_Mutation SNP T A A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 KIAA0355 9710 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 34791500 34791500 + Missense_Mutation SNP T T C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 KLF12 11278 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 74420129 74420129 + Missense_Mutation SNP G G T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 KLHL4 56062 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 86890606 86890606 + Frame_Shift_Del DEL T T - novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 KLK6 5653 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 51466690 51466690 + Nonsense_Mutation SNP G G A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 LARGE 9215 broad.mit.edu;hgsc.bcm.edu 37 22 33700423 33700423 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 LARS 51520 hgsc.bcm.edu 37 5 145543912 145543913 + Frame_Shift_Ins INS - - G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 LRP5 4041 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68193567 68193567 + Silent SNP C C G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 LRRC42 115353 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 54428053 54428053 + Missense_Mutation SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 LRRTM1 347730 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 80530941 80530941 + Missense_Mutation SNP C C G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MAP1S 55201 broad.mit.edu;hgsc.bcm.edu 37 19 17838796 17838796 + Missense_Mutation SNP G G C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MAP1S 55201 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 17838790 17838790 + Missense_Mutation SNP T T C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MARCKS 4082 hgsc.bcm.edu 37 6 114181301 114181302 + In_Frame_Ins INS - - TGAGGC novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MEI1 150365 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 42172238 42172238 + Missense_Mutation SNP C C A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MEX3A 92312 broad.mit.edu;ucsc.edu 37 1 156047265 156047265 + Silent SNP G A A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MEX3B 84206 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 82336581 82336581 + Missense_Mutation SNP C C A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MICAL3 57553 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 18368682 18368682 + Nonsense_Mutation SNP C C A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MIR199A2 406977 broad.mit.edu;hgsc.bcm.edu 37 1 172113783 172113783 + RNA SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MIR3184 100423003 broad.mit.edu;hgsc.bcm.edu 37 17 28444131 28444131 + RNA SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MOCS3 27304 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 49576416 49576416 + Missense_Mutation SNP A A T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MPND 84954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 4352949 4352949 + Missense_Mutation SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MTFR1 9650 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 66619369 66619369 + Silent SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 MYO15A 51168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 18062259 18062259 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 NDST2 8509 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 75563696 75563696 + Missense_Mutation SNP T T C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 NFASC 23114 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 204943409 204943409 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 PCCB 5096 broad.mit.edu;hgsc.bcm.edu 37 3 136046479 136046479 + Missense_Mutation SNP T T C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 PCDH7 5099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 30724623 30724623 + Missense_Mutation SNP G G T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 PPP6R3 55291 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 68355413 68355413 + Missense_Mutation SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 PREX1 57580 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 20 47266546 47266546 + Missense_Mutation SNP C C G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 RAD54L2 23132 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 51667705 51667705 + Nonsense_Mutation SNP T T A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 RIOK2 55781 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 96503556 96503556 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 RNF14 9604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141362998 141362998 + Missense_Mutation SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 RNF14 9604 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 141363016 141363016 + Missense_Mutation SNP T T C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SEC31A 22872 broad.mit.edu;hgsc.bcm.edu 37 4 83788105 83788105 + Silent SNP T T C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SERPINH1 871 broad.mit.edu;hgsc.bcm.edu 37 11 75280027 75280027 + Silent SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SGCA 6442 hgsc.bcm.edu;ucsc.edu 37 17 48243426 48243427 + Frame_Shift_Ins INS - - AA novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SGK223 157285 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 8233967 8233967 + Missense_Mutation SNP C C G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SLC15A4 121260 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 129285429 129285430 + Frame_Shift_Ins INS - - A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SLC5A11 115584 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 24869990 24869990 + Missense_Mutation SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SLCO1B3 28234 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 21036504 21036504 + Silent SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SMARCA4 6597 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 11144110 11144110 + Missense_Mutation SNP G G A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G G A G G Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SMC1B 27127 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 22 45745648 45745648 + Missense_Mutation SNP A A C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SNORD89 692205 broad.mit.edu;hgsc.bcm.edu 37 2 101889409 101889409 + RNA SNP A A G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SPAG1 6674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 101252794 101252795 + Frame_Shift_Del DEL CT CT - novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SPECC1 92521 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 20000054 20000054 + Silent SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 SYNRG 11276 hgsc.bcm.edu;ucsc.edu 37 17 35880695 35880695 + Frame_Shift_Del DEL A A - novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 TARS2 80222 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 150459930 150459930 + Missense_Mutation SNP G G A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 TBL1XR1 79718 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 176769354 176769354 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 THRA 7067 hgsc.bcm.edu 37 17 38245611 38245612 + Frame_Shift_Ins INS - - C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 TMEM180 79847 broad.mit.edu;ucsc.edu 37 10 104231152 104231152 + Missense_Mutation SNP A G G novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 TMEM182 130827 broad.mit.edu;hgsc.bcm.edu 37 2 103380788 103380788 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 TRDMT1 1787 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 17195548 17195548 + Missense_Mutation SNP G G C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 TUBB3 10381 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 90001521 90001521 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 UBE4B 10277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 10238756 10238758 + In_Frame_Del DEL GGG GGG - novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 GGG GGG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 UNC13B 10497 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 35385805 35385805 + Missense_Mutation SNP A A T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 USP15 9958 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 62749239 62749239 + Missense_Mutation SNP A A C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 YARS 8565 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 33245096 33245096 + Missense_Mutation SNP G G C novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 ZNF175 7728 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 52084648 52084648 + Missense_Mutation SNP C C T novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 DIO2 1734 broad.mit.edu 37 14 80669073 80669073 + Missense_Mutation SNP T A A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 OR7E37P 100506759 broad.mit.edu 37 13 42005884 42005885 + RNA INS - A A rs34102051 TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 PBX2 5089 broad.mit.edu 37 6 32155509 32155509 + Missense_Mutation SNP T A A novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 TTC3 7267 broad.mit.edu 37 21 38460511 38460517 + Frame_Shift_Del DEL GTATATG - - novel TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 GTATATG GTATATG . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274 Unknown 0 broad.mit.edu 37 1 205437150 205437151 + RNA INS - GTGT GTGT rs34140801 bycluster;by1000genomes;alternate_allele TCGA-A3-3319-01A-01D-0966-08 TCGA-A3-3319-11A-01D-0966-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx a771a7ad-8dfa-46ee-849d-4478798c46a6 3cf11e36-4249-4b4d-9def-42e9ec38e274