Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID ACCN2 0 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 50453582 50453582 + Silent SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ACCS 84680 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 44096169 44096169 + Missense_Mutation SNP G G A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b AKAP6 9472 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 33068660 33068660 + Silent SNP T T A rs144892695 alternate_allele TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T T A T T Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ANKRD36 375248 broad.mit.edu;hgsc.bcm.edu 37 2 97784175 97784175 + Missense_Mutation SNP A A T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ARSB 411 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 78076227 78076227 + Nonsense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ATG2A 23130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 64673943 64673943 + Nonsense_Mutation SNP G G A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b BAP1 8314 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 52438515 52438515 + Nonsense_Mutation SNP C C A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b BMX 660 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 X 15549469 15549469 + Missense_Mutation SNP A A G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b C10orf76 79591 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 103750317 103750317 + Missense_Mutation SNP T T C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b C16orf71 146562 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 4794979 4794979 + Missense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b C1orf114 57821 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 169391155 169391155 + Missense_Mutation SNP A A C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CARS 833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 3050597 3050597 + Missense_Mutation SNP G G C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CBX8 57332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 77768913 77768913 + Missense_Mutation SNP G G C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CDH8 1006 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 61689382 61689382 + Missense_Mutation SNP A A C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CEBPZ 10153 hgsc.bcm.edu 37 2 37428927 37428929 + In_Frame_Del DEL TTT TTT - rs148813970 by1000genomes TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 TTT TTT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CHIT1 1118 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 203186906 203186906 + Missense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CHRNA1 1134 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 175612868 175612868 + Nonsense_Mutation SNP A A T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A A T A A Unknown Valid Somatic Phase_I WXS PGM Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CILP2 148113 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19653420 19653420 + Missense_Mutation SNP G G A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b DMAP1 55929 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 44684379 44684379 + Silent SNP A A T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b DNAH3 55567 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 21033334 21033334 + Missense_Mutation SNP T T G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b DNAJA3 9093 hgsc.bcm.edu;ucsc.edu 37 16 4504893 4504893 + Frame_Shift_Del DEL T T - novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b DOCK7 85440 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 63084419 63084419 + Missense_Mutation SNP T T C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b DOK7 285489 hgsc.bcm.edu;ucsc.edu 37 4 3487325 3487325 + Frame_Shift_Del DEL T T - novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b DSC2 1824 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 28651758 28651758 + Silent SNP A A G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b EIF2AK4 440275 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 40299227 40299227 + Missense_Mutation SNP C C G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ENPEP 2028 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 4 111463966 111463966 + Missense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ERAP1 51752 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 96139528 96139528 + Silent SNP G G A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b FARP1 10160 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 99098408 99098408 + Silent SNP G G A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b FASN 2194 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 80041257 80041257 + Missense_Mutation SNP G G T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b FAT3 120114 hgsc.bcm.edu;ucsc.edu 37 11 92531377 92531377 + Missense_Mutation SNP G G A rs150673105 by1000genomes TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b GIF 2694 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 59611470 59611470 + Silent SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b HERC2 8924 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 28514431 28514431 + Missense_Mutation SNP C C A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C C A C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b HIST2H2BE 8349 hgsc.bcm.edu 37 1 149857934 149857936 + In_Frame_Del DEL TTG TTG - novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 TTG TTG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b IPO4 79711 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24657425 24657425 + Missense_Mutation SNP G G C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b KDM4B 23030 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 5137677 5137677 + Missense_Mutation SNP A A T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b KIF1C 10749 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 4926964 4926964 + Missense_Mutation SNP C C G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b KIFC1 3833 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33374604 33374604 + Silent SNP G G T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b LAMB3 3914 hgsc.bcm.edu 37 1 209796944 209796950 + Frame_Shift_Del DEL TGCCGCA TGCCGCA - novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 TGCCGCA TGCCGCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b LINGO1 84894 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 15 77906716 77906716 + Missense_Mutation SNP G G T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b LMO4 8543 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 87805242 87805242 + Missense_Mutation SNP G G C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b LRFN3 79414 broad.mit.edu;hgsc.bcm.edu 37 19 36430547 36430547 + Missense_Mutation SNP G G C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b MBD1 4152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 18 47799982 47799982 + Silent SNP A A T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b MTHFSD 64779 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 16 86565766 86565766 + Silent SNP G G T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b NOTCH1 4851 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 9 139410507 139410507 + Missense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C C T C C Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ORC1 4998 hgsc.bcm.edu;ucsc.edu 37 1 52867881 52867881 + Frame_Shift_Del DEL G G - novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PCCA 5095 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 13 100925589 100925589 + Missense_Mutation SNP A A T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PCDHA5 56143 broad.mit.edu;hgsc.bcm.edu 37 5 140202644 140202644 + Silent SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PDLIM4 8572 broad.mit.edu;hgsc.bcm.edu 37 5 131607572 131607572 + Silent SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PECR 55825 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 216908708 216908708 + Missense_Mutation SNP G G A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PODXL 5420 hgsc.bcm.edu 37 7 131241055 131241055 + Missense_Mutation SNP A A G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PPP5C 5536 hgsc.bcm.edu;ucsc.edu 37 19 46888136 46888136 + Missense_Mutation SNP C C G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PREPL 9581 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 44554022 44554022 + Silent SNP T T A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PROP1 5626 broad.mit.edu;hgsc.bcm.edu 37 5 177421243 177421243 + Missense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PRPSAP1 5635 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 17 74324943 74324943 + Missense_Mutation SNP C C G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b RGR 5995 hgsc.bcm.edu 37 10 86008696 86008698 + In_Frame_Del DEL GGA GGA - novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 GGA GGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b RIF1 55183 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 152320194 152320194 + Missense_Mutation SNP A A C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A A C A A Unknown Valid Somatic Phase_I WXS 454 Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b SAMD7 344658 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 3 169644942 169644942 + Missense_Mutation SNP C C A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b SELENBP1 8991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 1 151337664 151337664 + Splice_Site SNP C C G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b SLC6A5 9152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 20676346 20676346 + Missense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b SLC6A5 9152 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 11 20676347 20676347 + Missense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b SLC8A3 6547 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 70633975 70633975 + Missense_Mutation SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b SMEK2 57223 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 55813757 55813757 + Silent SNP T T A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ST6GAL2 84620 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 107460218 107460218 + Silent SNP C C G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b SUGP2 10147 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 19136452 19136452 + Silent SNP G G A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b TBC1D15 64786 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 12 72278663 72278663 + Missense_Mutation SNP A A G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b TINF2 26277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 14 24710922 24710922 + Missense_Mutation SNP G G T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b TNPO2 30000 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 19 12813644 12813644 + Missense_Mutation SNP T T A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b TRAPPC10 7109 broad.mit.edu;ucsc.edu 37 21 45522670 45522670 + Missense_Mutation SNP A T T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b TTC33 23548 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 5 40716581 40716581 + Missense_Mutation SNP A A C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b TUSC3 7991 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 8 15531300 15531300 + Silent SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b VENTX 27287 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 10 135053527 135053527 + Missense_Mutation SNP C C A rs150065198 byfrequency;alternate_allele TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b WDR46 9277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33248690 33248690 + Missense_Mutation SNP G G A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b WDR46 9277 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 6 33248691 33248691 + Missense_Mutation SNP T T A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ZFAND2B 130617 broad.mit.edu;hgsc.bcm.edu;ucsc.edu 37 2 220072989 220072989 + Missense_Mutation SNP T T C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ZNF12 7559 broad.mit.edu;hgsc.bcm.edu 37 7 6731607 6731607 + Silent SNP C C T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ZNF304 57343 hgsc.bcm.edu;ucsc.edu 37 19 57863052 57863052 + Frame_Shift_Del DEL T T - novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b AMN 81693 broad.mit.edu 37 14 103389067 103389067 + Silent SNP C T T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CDC14C 168448 broad.mit.edu 37 7 48965048 48965048 + Silent SNP C A A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b CNTNAP4 85445 broad.mit.edu 37 16 76486631 76486631 + Missense_Mutation SNP A C C rs150449060 alternate_allele TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b ITGA1 3672 broad.mit.edu 37 5 52221113 52221113 + Silent SNP C G G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b LOC442421 0 broad.mit.edu 37 9 66499680 66499680 + Missense_Mutation SNP C A A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b LPA 4018 broad.mit.edu 37 6 161032706 161032706 + Nonsense_Mutation SNP C A A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b LYPD5 284348 broad.mit.edu 37 19 44303017 44303017 + Missense_Mutation SNP T A A novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b PLAC4 191585 broad.mit.edu 37 21 42551343 42551343 + Silent SNP G C C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b RAC1 5879 broad.mit.edu 37 7 6442071 6442071 + Silent SNP G C C novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b SPCS3 60559 broad.mit.edu 37 4 177248330 177248330 + Silent SNP C T T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b Unknown 0 broad.mit.edu 37 15 76074431 76074431 + Missense_Mutation SNP C T T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b Unknown 0 broad.mit.edu 37 15 76074441 76074441 + Missense_Mutation SNP A T T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b Unknown 0 broad.mit.edu 37 17 76497744 76497744 + RNA SNP T G G novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b Unknown 0 broad.mit.edu 37 19 34584130 34584130 + Missense_Mutation SNP G T T novel TCGA-A3-3317-01A-01D-0966-08 TCGA-A3-3317-11A-01D-0966-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina GAIIx cd12847f-695b-4b97-9a56-a4a1ddc58ec4 02b0790a-61a7-4917-be68-533c397b2e6b