Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID PTEN 5728 broad.mit.edu;hgsc.bcm.edu 37 10 89711920 89711926 + Frame_Shift_Del DEL TACCTGT TACCTGT - novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 TACCTGT TACCTGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 SPAG17 200162 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 118596629 118596629 + Missense_Mutation SNP A A T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 CFHR3 10878 hgsc.bcm.edu 37 1 196744041 196744041 + Silent SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 COMMD6 170622 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 13 76111919 76111919 + Missense_Mutation SNP G G A rs143172831 alternate_allele TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 C14orf21 161424 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 14 24773484 24773484 + Splice_Site SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 AGBL4 84871 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 49100247 49100247 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 LEPREL4 10609 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 39963092 39963092 + Missense_Mutation SNP C C G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 MAG 4099 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 19 35800935 35800935 + Nonsense_Mutation SNP G G T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 DSCAM 1826 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 21 41514495 41514495 + Silent SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 TLK1 9874 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 171871451 171871451 + Missense_Mutation SNP G G T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 GAB4 128954 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 22 17443634 17443634 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 IGFBP5 3488 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 217559222 217559222 + Missense_Mutation SNP G G T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 TTLL4 9654 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 219610500 219610500 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 CSF2RB 1439 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 22 37333576 37333576 + Missense_Mutation SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 ANK2 287 hgsc.bcm.edu;ucsc.edu 37 4 114276401 114276401 + Silent SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 FAT4 79633 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 126389910 126389910 + Missense_Mutation SNP T T C novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 RGS12 6002 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 3417849 3417849 + Splice_Site SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 EXOC1 55763 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 56737009 56737009 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 DSPP 1834 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 4 88535754 88535754 + Missense_Mutation SNP G G T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 FAM26F 441168 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 6 116784510 116784510 + Missense_Mutation SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 PODXL 5420 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 131189141 131189141 + Missense_Mutation SNP C C A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 VIPR2 7434 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 158823446 158823446 + Missense_Mutation SNP C C A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 SH3KBP1 30011 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 X 19854348 19854348 + Silent SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 TAF1 6872 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 70627428 70627428 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 MTCH2 23788 broad.mit.edu;hgsc.bcm.edu 37 11 47653265 47653265 + Splice_Site SNP T T C novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 BPTF 2186 hgsc.bcm.edu;bcgsc.ca 37 17 65908787 65908787 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 GRAMD1C 54762 hgsc.bcm.edu;mdanderson.org 37 3 113623086 113623086 + Silent SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 ZNHIT6 54680 broad.mit.edu 37 1 86167918 86167918 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 APEX1 328 broad.mit.edu 37 14 20925577 20925578 + Frame_Shift_Del DEL CT CT - novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 CORO7 79585 broad.mit.edu;mdanderson.org;bcgsc.ca 37 16 4445319 4445319 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 SSTR2 6752 broad.mit.edu 37 17 71165682 71165682 + Missense_Mutation SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 CXXC1 30827 broad.mit.edu;mdanderson.org;bcgsc.ca 37 18 47812501 47812501 + Missense_Mutation SNP T T G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 MUC16 94025 broad.mit.edu 37 19 9068199 9068199 + Missense_Mutation SNP T T C novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 KIDINS220 57498 broad.mit.edu;ucsc.edu;mdanderson.org 37 2 8871660 8871660 + Silent SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 EHBP1 23301 broad.mit.edu 37 2 63223821 63223821 + Missense_Mutation SNP C C A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 LRP1B 53353 broad.mit.edu 37 2 141819781 141819781 + Missense_Mutation SNP T T C novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 TTN 7273 broad.mit.edu 37 2 179480474 179480474 + Silent SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 CELSR1 9620 broad.mit.edu;mdanderson.org 37 22 46763729 46763729 + Missense_Mutation SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 PALLD 23022 broad.mit.edu 37 4 169837136 169837136 + Silent SNP T T C novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 HMGCS1 3157 broad.mit.edu 37 5 43297257 43297257 + Missense_Mutation SNP T T C novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 SH3TC2 79628 broad.mit.edu 37 5 148407015 148407015 + Silent SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 DPY19L2P1 554236 broad.mit.edu 37 7 35131521 35131521 + RNA SNP G G A rs200009436 TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 LRCH4 4034 broad.mit.edu 37 7 100174729 100174729 + Silent SNP C C A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 ANKRD18A 253650 broad.mit.edu 37 9 38577058 38577058 + Frame_Shift_Del DEL T T - novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 TJP2 9414 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 71845079 71845079 + Missense_Mutation SNP T T G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 KDM5C 8242 broad.mit.edu;mdanderson.org 37 X 53239928 53239928 + Missense_Mutation SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 SLITRK2 84631 broad.mit.edu 37 X 144906354 144906354 + Missense_Mutation SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 IL37 27178 broad.mit.edu 37 2 113671391 113671392 + Frame_Shift_Ins INS - - C novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 MFSD10 10227 broad.mit.edu 37 4 2935348 2935349 + Frame_Shift_Ins INS - - A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 ARVCF 421 ucsc.edu 37 22 19967489 19967489 + Silent SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 BEGAIN 57596 ucsc.edu 37 14 101005154 101005154 + Missense_Mutation SNP G G T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 CACNA1H 8912 ucsc.edu 37 16 1260601 1260601 + Missense_Mutation SNP G G A rs28365125 TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 FMO2 2327 ucsc.edu 37 1 171165803 171165803 + Missense_Mutation SNP G G T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 GABBR1 2550 ucsc.edu 37 6 29580384 29580384 + Missense_Mutation SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 KIF2C 11004 ucsc.edu 37 1 45228320 45228320 + Missense_Mutation SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 LEPR 3953 ucsc.edu;bcgsc.ca 37 1 66083683 66083683 + Missense_Mutation SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 RASGEF1B 153020 ucsc.edu 37 4 82368697 82368697 + Silent SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 DDX12P 440081 mdanderson.org 37 12 9583300 9583300 + RNA SNP C C T rs3891016 byfrequency TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 KIAA2013 90231 mdanderson.org 37 1 11985396 11985396 + Missense_Mutation SNP A A G novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 KRT38 8687 mdanderson.org 37 17 39595539 39595539 + Silent SNP A A G rs117668654 byfrequency TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 MAGI1 9223 mdanderson.org 37 3 65425591 65425591 + Silent SNP T T C rs79701778 bycluster;byfrequency TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 MAGI1 9223 mdanderson.org 37 3 65425594 65425594 + Silent SNP C C T novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 MUC5B 727897 mdanderson.org 37 11 1268481 1268481 + Silent SNP G G A rs186744090 byfrequency TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 OR1S2 219958 mdanderson.org 37 11 57971190 57971190 + Missense_Mutation SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 PABPC3 5042 mdanderson.org 37 13 25671795 25671795 + Missense_Mutation SNP C C T rs113416318 byfrequency TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 RASSF3 283349 mdanderson.org 37 12 65004520 65004520 + Silent SNP A A G rs77813527 byfrequency TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 RNF145 153830 mdanderson.org 37 5 158603804 158603804 + Missense_Mutation SNP T T C rs199990596 byfrequency TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 CTSE 1510 bcgsc.ca 37 1 206327526 206327526 + Missense_Mutation SNP T T C rs145082936 TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 PTEN 5728 bcgsc.ca 37 10 89711921 89711927 + Frame_Shift_Del DEL TACCTGT TACCTGT - novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 TACCTGT TACCTGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 FRG1B 284802 bcgsc.ca 37 20 29623215 29623215 + RNA SNP G G A rs77485836 TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 ND5 0 bcgsc.ca 37 MT 13463 13463 + Missense_Mutation SNP G G A novel TCGA-KL-8345-01A-11D-2310-10 TCGA-KL-8345-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141 e75d4ed6-f99b-480f-b14b-66803de8151d ba203c68-18a0-47ab-953c-39e98349d141