Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID RTKN2 219790 hgsc.bcm.edu;mdanderson.org 37 10 63957976 63957976 + Silent SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b DDX50 79009 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 10 70702984 70702984 + Missense_Mutation SNP G G C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b NTM 50863 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 132081945 132081945 + Missense_Mutation SNP G G T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b BRSK2 9024 broad.mit.edu;hgsc.bcm.edu 37 11 1466625 1466625 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b NRAS 4893 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 1 115256530 115256530 + Missense_Mutation SNP G G T rs121913254 bycluster TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CRNN 49860 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 1 152382811 152382811 + Missense_Mutation SNP C C A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b EFNA4 1945 hgsc.bcm.edu;mdanderson.org 37 1 155036407 155036407 + Silent SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SPTA1 6708 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 158596633 158596633 + Nonsense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MS4A5 64232 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 60198312 60198312 + Missense_Mutation SNP T T G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b COPA 1314 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 1 160275563 160275563 + Silent SNP C C G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GPR161 23432 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 168066296 168066296 + Missense_Mutation SNP G G T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b FMO3 2328 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 1 171072967 171072967 + Silent SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PAPPA2 60676 hgsc.bcm.edu;ucsc.edu 37 1 176709219 176709219 + Silent SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b F13B 2165 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 197026583 197026583 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b TIMM17A 10440 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 1 201934576 201934576 + Missense_Mutation SNP T T C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ESPL1 9700 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 12 53670499 53670499 + Missense_Mutation SNP C C G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b LATS2 26524 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 13 21557476 21557476 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CSMD2 114784 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 1 34209065 34209065 + Silent SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b AGBL1 123624 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 15 86808034 86808034 + Silent SNP C C A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b DNAH9 1770 hgsc.bcm.edu 37 17 11540080 11540080 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ITGA3 3675 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 17 48154412 48154412 + Missense_Mutation SNP C C G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b KIF19 124602 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 72348987 72348987 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b DSG2 1829 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 18 29122688 29122688 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CYP4F11 57834 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 19 16025181 16025181 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b UNC13A 23025 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 19 17756839 17756839 + Missense_Mutation SNP T T G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ANKRD27 84079 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 19 33113433 33113433 + Silent SNP G G T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ZNF667 63934 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 19 56952705 56952705 + Silent SNP T T C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b DDRGK1 65992 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 20 3172425 3172425 + Missense_Mutation SNP C C A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b DIDO1 11083 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 20 61525220 61525220 + Missense_Mutation SNP C C A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b KYNU 8942 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 143713785 143713785 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MBD5 55777 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 149247532 149247532 + Missense_Mutation SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b TTN 7273 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 179437087 179437087 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b TTN 7273 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 2 179644742 179644742 + Silent SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b WDR35 57539 hgsc.bcm.edu;ucsc.edu 37 2 20189771 20189771 + Silent SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b TTLL12 23170 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 22 43565506 43565506 + Silent SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b LEF1 51176 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 4 109084842 109084842 + Missense_Mutation SNP C C G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b FGFBP2 83888 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 15964500 15964500 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MARCH1 55016 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 4 164466780 164466780 + Missense_Mutation SNP G G C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SEMA6A 57556 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 5 115840607 115840607 + Missense_Mutation SNP G G C rs36105994 bycluster;by1000genomes;alternate_allele TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CPLX2 10814 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 175306003 175306003 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MCTP1 79772 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 94046552 94046552 + Missense_Mutation SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b RFX6 222546 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 6 117248566 117248566 + Silent SNP G G T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ANKRD7 56311 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 7 117876137 117876137 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SRCRB4D 136853 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 76021323 76021323 + Missense_Mutation SNP C C G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SEMA3A 10371 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 7 83590705 83590705 + Silent SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b DCAF13 25879 hgsc.bcm.edu 37 8 104427572 104427572 + Silent SNP T T A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PKHD1L1 93035 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 8 110530424 110530424 + Silent SNP T T C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CSMD3 114788 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 8 113988244 113988244 + Silent SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CYP11B1 1584 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 8 143958438 143958438 + Splice_Site SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b C9orf72 203228 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 9 27556771 27556771 + Silent SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b XPNPEP2 7512 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 X 128886303 128886303 + Silent SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GPR101 83550 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 136112626 136112626 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b DCLRE1A 9937 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 10 115609249 115609249 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CYP2C9 1559 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 10 96748762 96748762 + Nonsense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b UBTD1 80019 hgsc.bcm.edu 37 10 99329915 99329915 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SPEN 23013 hgsc.bcm.edu;ucsc.edu 37 1 16256119 16256119 + Silent SNP C C T rs140864111 bycluster;byfrequency;by1000genomes TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GAL3ST3 89792 hgsc.bcm.edu;mdanderson.org 37 11 65811123 65811124 + Missense_Mutation DNP AG AG CT novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 AG AG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PFKL 5211 hgsc.bcm.edu 37 21 45744402 45744402 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GPR87 53836 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 3 151012813 151012813 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b NOM1 64434 broad.mit.edu 37 7 156752565 156752567 + In_Frame_Del DEL GGC GGC - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 GGC GGC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b NOM1 64434 hgsc.bcm.edu 37 7 156752565 156752570 + In_Frame_Del DEL GGCAGT GGCAGT - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 GGCAGT GGCAGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b NOM1 64434 broad.mit.edu 37 7 156752569 156752570 + Frame_Shift_Del DEL GT GT - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SYT6 148281 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 114680520 114680520 + Missense_Mutation SNP T T G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b KIAA1462 57608 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 10 30318485 30318485 + Nonsense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b LUZP2 338645 broad.mit.edu 37 11 24936024 24936024 + Frame_Shift_Del DEL A A - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GAL3ST3 89792 broad.mit.edu;bcgsc.ca 37 11 65811124 65811124 + Missense_Mutation SNP G G T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MMP12 4321 broad.mit.edu;ucsc.edu;mdanderson.org 37 11 102737125 102737125 + Silent SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ALG10B 144245 broad.mit.edu 37 12 38714025 38714025 + Frame_Shift_Del DEL T T - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SP2 6668 broad.mit.edu;mdanderson.org 37 17 46000417 46000417 + Silent SNP C C G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b COL1A1 1277 broad.mit.edu;bcgsc.ca 37 17 48267232 48267232 + Missense_Mutation SNP G G C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b BAIAP2 10458 broad.mit.edu 37 17 79080558 79080558 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ZNF563 147837 broad.mit.edu 37 19 12433413 12433423 + Frame_Shift_Del DEL TTCCTGATGGT TTCCTGATGGT - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 TTCCTGATGGT TTCCTGATGGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PRDX2 7001 broad.mit.edu;ucsc.edu;mdanderson.org 37 19 12911998 12911998 + Silent SNP T T C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b EPT1 85465 broad.mit.edu;mdanderson.org 37 2 26596325 26596325 + Missense_Mutation SNP T T C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b FOXN2 3344 broad.mit.edu 37 2 48602092 48602092 + Frame_Shift_Del DEL A A - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b AFTPH 54812 broad.mit.edu 37 2 64779179 64779179 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PROM2 150696 broad.mit.edu 37 2 95944771 95944771 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b RIF1 55183 broad.mit.edu 37 2 152293790 152293790 + Frame_Shift_Del DEL T T - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ARL4C 10123 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 2 235404686 235404686 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GRM7 2917 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 3 7620544 7620544 + Missense_Mutation SNP G G C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ZNF445 353274 broad.mit.edu 37 3 44489837 44489837 + Silent SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SCAP 22937 broad.mit.edu 37 3 47462126 47462126 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ABI3BP 25890 broad.mit.edu;mdanderson.org;bcgsc.ca 37 3 100515270 100515270 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC4 4585 broad.mit.edu;mdanderson.org 37 3 195510911 195510911 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b HIST1H2BD 3017 broad.mit.edu 37 6 26158611 26158611 + Missense_Mutation SNP G G C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ATAT1 79969 broad.mit.edu 37 6 30594990 30594990 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PABPC1 26986 broad.mit.edu 37 8 101724626 101724627 + Frame_Shift_Del DEL TT TT - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 TT TT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b RPP25L 138716 broad.mit.edu 37 9 34611014 34611014 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ROR2 4920 broad.mit.edu;ucsc.edu;mdanderson.org 37 9 94487339 94487339 + Silent SNP C C G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GARNL3 84253 broad.mit.edu 37 9 130075815 130075815 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b C10orf114 399726 broad.mit.edu 37 10 21784654 21784655 + Frame_Shift_Ins INS - - C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC5B 727897 broad.mit.edu 37 11 1271712 1271713 + Frame_Shift_Ins INS - - C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PABPC1 26986 broad.mit.edu 37 8 101724623 101724624 + Frame_Shift_Ins INS - - A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b C7orf57 136288 ucsc.edu 37 7 48080990 48080990 + Missense_Mutation SNP T T C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CADM4 199731 ucsc.edu 37 19 44130965 44130965 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b DCLRE1C 64421 ucsc.edu;mdanderson.org;bcgsc.ca 37 10 14951197 14951197 + Missense_Mutation SNP C C G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GRIA4 2893 ucsc.edu;mdanderson.org;bcgsc.ca 37 11 105776029 105776029 + Splice_Site SNP T T G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b NAPA 8775 ucsc.edu 37 19 47991552 47991552 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b TMUB2 79089 ucsc.edu;mdanderson.org 37 17 42268154 42268154 + Silent SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ABCA6 23460 mdanderson.org 37 17 67092895 67092895 + Silent SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ABCD1 215 mdanderson.org 37 X 153006092 153006093 + Missense_Mutation DNP CA CA TG rs201878013 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CNTNAP3 79937 mdanderson.org 37 9 39177438 39177438 + Silent SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b FLG 2312 mdanderson.org 37 1 152284806 152284806 + Silent SNP C C T rs71625190 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b FRG1 2483 mdanderson.org 37 4 190878571 190878571 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b FSCN2 25794 mdanderson.org 37 17 79495969 79495969 + Missense_Mutation SNP C C T rs143796236 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b HCN2 610 mdanderson.org 37 19 613898 613898 + Silent SNP T T C rs1054786 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b KIF26A 26153 mdanderson.org 37 14 104642341 104642341 + Silent SNP A A G rs2487304 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MACROD1 28992 mdanderson.org 37 11 63767186 63767186 + Silent SNP A A G rs709594 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC16 94025 mdanderson.org 37 19 8999441 8999441 + Silent SNP G G A rs80293661 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC21 394263 mdanderson.org 37 6 30954921 30954921 + Silent SNP C C G rs148418523 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC4 4585 mdanderson.org 37 3 195505742 195505742 + Missense_Mutation SNP G G C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC4 4585 mdanderson.org 37 3 195507173 195507173 + Missense_Mutation SNP G G A rs200197178 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC4 4585 mdanderson.org 37 3 195511547 195511547 + Missense_Mutation SNP C C T rs74542179 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC6 4588 mdanderson.org 37 11 1018262 1018262 + Missense_Mutation SNP G G T rs78003962 alternate_allele TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b OBSCN 84033 mdanderson.org;bcgsc.ca 37 1 228433197 228433197 + Missense_Mutation SNP G G C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b OR2T27 403239 mdanderson.org 37 1 248813271 248813271 + Silent SNP C C A rs2802081 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PLEC 5339 mdanderson.org 37 8 144996029 144996029 + Missense_Mutation SNP A A G rs7833924 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PPAPDC3 84814 mdanderson.org 37 9 134183379 134183379 + Missense_Mutation SNP C C T rs2966332 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PRB2 653247 mdanderson.org 37 12 11546378 11546378 + Missense_Mutation SNP G G A rs200759746 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b PRR5 55615 mdanderson.org 37 22 45132785 45132785 + Silent SNP T T C rs6006865 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b RIMBP3 85376 mdanderson.org 37 22 20457383 20457383 + Missense_Mutation SNP G G T rs2242314 bycluster TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SCARA5 286133 mdanderson.org 37 8 27779545 27779545 + Silent SNP C C T rs10103504 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SLC9B1 150159 mdanderson.org 37 4 103870578 103870578 + Missense_Mutation SNP A A G rs79959710 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b SSX9 280660 mdanderson.org 37 X 48163717 48163717 + RNA SNP C C T rs3901052 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b TBP 6908 mdanderson.org 37 6 170871058 170871058 + Silent SNP G G A rs113440919 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b TTBK1 84630 mdanderson.org 37 6 43251912 43251912 + Missense_Mutation SNP A A G rs3800297 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b TYSND1 219743 mdanderson.org 37 10 71906150 71906150 + Missense_Mutation SNP T T C rs4746970 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b WISP2 8839 mdanderson.org 37 20 43348735 43348735 + Silent SNP C C A rs2296530 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b WWTR1 25937 mdanderson.org 37 3 149374873 149374873 + Missense_Mutation SNP G G T rs1055153 byfrequency TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ZNF799 90576 mdanderson.org 37 19 12502998 12502998 + Missense_Mutation SNP C C T rs17846016 TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b EXOSC10 5394 bcgsc.ca 37 1 11151122 11151122 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b CYP4X1 260293 bcgsc.ca 37 1 47498964 47498964 + Missense_Mutation SNP T T C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MUC6 4588 bcgsc.ca 37 11 1016835 1016835 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b GAL3ST3 89792 bcgsc.ca 37 11 65811123 65811123 + Missense_Mutation SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b A2M 2 bcgsc.ca 37 12 9253745 9253745 + Missense_Mutation SNP T T C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ATG4D 84971 bcgsc.ca 37 19 10654987 10654987 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ZNF563 147837 bcgsc.ca 37 19 12433414 12433424 + Frame_Shift_Del DEL TTCCTGATGGT TTCCTGATGGT - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 TTCCTGATGGT TTCCTGATGGT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b ZNF729 100287226 bcgsc.ca 37 19 22487573 22487573 + Missense_Mutation SNP A A C novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b RMND5A 64795 bcgsc.ca 37 2 86993084 86993084 + Missense_Mutation SNP A A G novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b FRG1 2483 bcgsc.ca 37 4 190878596 190878596 + Missense_Mutation SNP G G A novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b MAP1B 4131 bcgsc.ca 37 5 71493198 71493198 + Missense_Mutation SNP C C T novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b NOM1 64434 bcgsc.ca 37 7 156752566 156752568 + In_Frame_Del DEL GGC GGC - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 GGC GGC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b NOM1 64434 bcgsc.ca 37 7 156752570 156752571 + Frame_Shift_Del DEL GT GT - novel TCGA-KN-8427-01A-11D-2310-10 TCGA-KN-8427-11A-01D-2311-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b 07e0e938-f61f-477a-92a2-5b7e74b78943 8c9e2ce1-0c90-49e7-a0ea-0ac0efcb7f6b