Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID OR10G4 390264 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 11 123886665 123886665 + Silent SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ATG2A 23130 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 64664265 64664265 + Missense_Mutation SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 STX6 10228 hgsc.bcm.edu;ucsc.edu 37 1 180945772 180945772 + Silent SNP T T C novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 KBTBD6 89890 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 13 41704863 41704863 + Missense_Mutation SNP C C A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 KIAA0753 9851 hgsc.bcm.edu 37 17 6510586 6510586 + Missense_Mutation SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 WFDC5 149708 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 20 43739299 43739299 + Missense_Mutation SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 R3HDM1 23518 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 2 136473266 136473266 + Splice_Site SNP T T A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 B3GALT5 10317 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 21 41033159 41033159 + Missense_Mutation SNP G G A rs144752439 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 PRPF40A 55660 hgsc.bcm.edu;ucsc.edu 37 2 153573942 153573942 + Silent SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 WDR52 55779 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 3 113114596 113114596 + Splice_Site SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ARC 23237 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 8 143694490 143694490 + Silent SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 TLR1 7096 hgsc.bcm.edu 37 4 38798159 38798159 + Missense_Mutation SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 VSTM1 284415 hgsc.bcm.edu;mdanderson.org 37 19 54561798 54561798 + Silent SNP A A T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 PCLO 27445 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 7 82579951 82579951 + Missense_Mutation SNP T T C novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 DNASE2B 58511 broad.mit.edu;mdanderson.org 37 1 84876612 84876612 + Silent SNP A A T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 GALNT6 11226 broad.mit.edu 37 12 51757967 51757967 + Silent SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 OR4N2 390429 broad.mit.edu 37 14 20296067 20296067 + Frame_Shift_Del DEL G G - novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 BCAS3 54828 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 17 59118255 59118255 + Splice_Site SNP T T G novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 PRKD3 23683 broad.mit.edu 37 2 37483813 37483813 + Frame_Shift_Del DEL G G - novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 CCDC85A 114800 broad.mit.edu;mdanderson.org 37 2 56420144 56420144 + Missense_Mutation SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 EPC2 26122 broad.mit.edu 37 2 149542571 149542572 + Splice_Site DEL GT GT - novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 SCN3A 6328 broad.mit.edu;mdanderson.org 37 2 165987817 165987817 + Silent SNP G G T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 TTN 7273 broad.mit.edu 37 2 179401232 179401232 + Silent SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 SRSF6 6431 broad.mit.edu 37 20 42089576 42089576 + Missense_Mutation SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 TMPRSS15 5651 broad.mit.edu;mdanderson.org 37 21 19744529 19744529 + Silent SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 NYAP1 222950 broad.mit.edu 37 7 100087171 100087171 + Silent SNP C C A rs141655359 byfrequency;alternate_allele TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MYC 4609 broad.mit.edu 37 8 128752827 128752827 + Frame_Shift_Del DEL A A - novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 PTPRD 5789 broad.mit.edu;mdanderson.org;bcgsc.ca 37 9 8521528 8521528 + Missense_Mutation SNP C C G novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 NKAP 79576 broad.mit.edu 37 X 119072773 119072773 + Silent SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ZBTB33 10009 broad.mit.edu 37 X 119389135 119389135 + Missense_Mutation SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ELMO3 79767 ucsc.edu 37 16 67233116 67233116 + Missense_Mutation SNP T T C novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 GAS2L1 10634 ucsc.edu;mdanderson.org 37 22 29704662 29704662 + Silent SNP C C G rs56037813 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 HCRTR1 3061 ucsc.edu 37 1 32085198 32085198 + Missense_Mutation SNP T T C novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 NLRP7 199713 ucsc.edu;mdanderson.org;bcgsc.ca 37 19 55447692 55447692 + Missense_Mutation SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 RFX7 64864 ucsc.edu 37 15 56388708 56388708 + Silent SNP T T C novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 TEX26 122046 ucsc.edu 37 13 31531011 31531011 + Missense_Mutation SNP A A G novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ZC3H12A 80149 ucsc.edu;bcgsc.ca 37 1 37947246 37947246 + Missense_Mutation SNP T T C novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ANKRD20A5P 440482 mdanderson.org 37 18 14183978 14183978 + RNA SNP T T C rs77403707 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 CCDC144NL 339184 mdanderson.org 37 17 20768744 20768744 + Missense_Mutation SNP G G T rs62066974 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 DLG2 1740 mdanderson.org 37 11 84245725 84245725 + Missense_Mutation SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 DSPP 1834 mdanderson.org 37 4 88537088 88537088 + Missense_Mutation SNP A A G rs201754564 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 FAM120AOS 158293 mdanderson.org 37 9 96214928 96214928 + Missense_Mutation SNP G G A rs1055710 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 FAM182A 284800 mdanderson.org 37 20 26061967 26061967 + RNA SNP G G T rs200610416 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 FAM86B1 85002 mdanderson.org 37 8 12044010 12044010 + Missense_Mutation SNP C C T rs201876260 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 FRG1B 284802 mdanderson.org 37 20 29628282 29628282 + RNA SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 KRTAP10-2 386679 mdanderson.org 37 21 45971081 45971081 + Silent SNP C C T rs79593866 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 KRTAP4-3 85290 mdanderson.org 37 17 39324333 39324333 + Missense_Mutation SNP T T A rs12953139 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 KRTAP5-10 387273 mdanderson.org 37 11 71276702 71276702 + Silent SNP C C T rs113977776 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 LILRB1 10859 mdanderson.org 37 19 55147988 55147988 + Missense_Mutation SNP A A C rs77680604 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC2 4583 mdanderson.org 37 11 1093575 1093575 + Silent SNP G G T rs201450769 alternate_allele TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC4 4585 mdanderson.org 37 3 195505945 195505945 + Missense_Mutation SNP A A G rs200786826 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC4 4585 mdanderson.org 37 3 195507049 195507049 + Missense_Mutation SNP G G A rs76834296 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC4 4585 mdanderson.org 37 3 195509093 195509093 + Missense_Mutation SNP G G A rs77902873 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC4 4585 mdanderson.org 37 3 195509108 195509108 + Missense_Mutation SNP T T A rs200863118 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC4 4585 mdanderson.org 37 3 195510108 195510108 + Silent SNP G G A novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC6 4588 mdanderson.org 37 11 1017684 1017684 + Missense_Mutation SNP G G A rs112886536 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 NACAD 23148 mdanderson.org 37 7 45123859 45123859 + Silent SNP G G A rs72497819 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 OR9G1 390174 mdanderson.org 37 11 56468440 56468440 + Missense_Mutation SNP G G T rs12421330 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 PLEC 5339 mdanderson.org 37 8 144996111 144996111 + Silent SNP C C T rs34803322 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 POM121L1P 25812 mdanderson.org 37 22 22977706 22977706 + RNA SNP G G C rs150479444 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 POMZP3 22932 mdanderson.org 37 7 76255328 76255328 + Silent SNP C C T rs199608185 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 POTEG 404785 mdanderson.org 37 14 19558994 19558994 + Missense_Mutation SNP G G A rs4497955 bycluster;by2hit2allele TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 PRB2 653247 mdanderson.org 37 12 11546006 11546006 + Missense_Mutation SNP G G A rs74718516 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 PRSS3 5646 mdanderson.org 37 9 33798016 33798016 + Silent SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 RAB11FIP5 26056 mdanderson.org 37 2 73316240 73316240 + Missense_Mutation SNP A A G novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 SNRPB2 6629 mdanderson.org;bcgsc.ca 37 20 16717906 16717906 + Nonsense_Mutation SNP C C T novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 XAB2 56949 mdanderson.org 37 19 7694393 7694393 + Silent SNP G G A rs4134809 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ZRSR2 8233 mdanderson.org 37 X 15838366 15838366 + Silent SNP C C T rs2301724 byfrequency TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 FASTKD1 79675 bcgsc.ca 37 2 170393737 170393737 + Missense_Mutation SNP C C T rs139576803 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ELFN2 114794 bcgsc.ca 37 22 37770611 37770611 + Missense_Mutation SNP T T C novel TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC4 4585 bcgsc.ca 37 3 195514379 195514379 + Missense_Mutation SNP T T C rs79461778 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 MUC4 4585 bcgsc.ca 37 3 195514403 195514403 + Missense_Mutation SNP C C T rs79754259 TCGA-KN-8421-01A-11D-2310-10 TCGA-KN-8421-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643 ba686386-8113-4885-b20f-6ad09a295604 9d5ee3f8-490f-4865-bb90-fe0a1bbf3643