Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID MYBPHL 343263 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 1 109840820 109840820 + Missense_Mutation SNP C C A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff BIRC3 330 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 102206944 102206944 + Missense_Mutation SNP T T G novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TRIM22 10346 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 11 5717467 5717467 + Missense_Mutation SNP A A G novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff KCNH5 27133 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 14 63174364 63174364 + Silent SNP C C T novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff SPTBN5 51332 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 15 42143342 42143342 + Missense_Mutation SNP C C T novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff DNAJA2 10294 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 16 46991077 46991077 + Missense_Mutation SNP G G A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TANGO6 79613 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 16 68961835 68961835 + Missense_Mutation SNP C C G novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TMED1 11018 broad.mit.edu;hgsc.bcm.edu 37 19 10943859 10943865 + Frame_Shift_Del DEL CCAGCCG CCAGCCG - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 CCAGCCG CCAGCCG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ZNF799 90576 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 19 12501695 12501695 + Missense_Mutation SNP C C A rs201843472 TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff NCOA3 8202 hgsc.bcm.edu 37 20 46279839 46279839 + Silent SNP G G A rs2664555 TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff PARD3B 117583 broad.mit.edu;hgsc.bcm.edu 37 2 206110537 206110538 + Frame_Shift_Ins INS - - A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ANKRD17 26057 broad.mit.edu;hgsc.bcm.edu 37 4 74012976 74012979 + Frame_Shift_Del DEL TAAC TAAC - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 TAAC TAAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff CNOT4 4850 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 7 135079031 135079031 + Silent SNP T T C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TSC1 7248 broad.mit.edu;hgsc.bcm.edu 37 9 135779084 135779093 + Frame_Shift_Del DEL CGGAGGAGCC CGGAGGAGCC - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 CGGAGGAGCC CGGAGGAGCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff MYO18B 84700 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 22 26351240 26351240 + Missense_Mutation SNP G G C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff NUDT12 83594 hgsc.bcm.edu 37 5 102891744 102891744 + Silent SNP G G A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff CLPTM1L 81037 hgsc.bcm.edu 37 5 1344897 1344897 + Silent SNP C C A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff HCFC1 3054 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 153220585 153220585 + Missense_Mutation SNP T T C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff BMP8A 353500 broad.mit.edu 37 1 39987055 39987055 + Silent SNP C C T novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff RNPEP 6051 broad.mit.edu 37 1 201969125 201969125 + Missense_Mutation SNP C C T rs140770038 alternate_allele TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff OBSCN 84033 broad.mit.edu 37 1 228471449 228471449 + Missense_Mutation SNP C C T novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff GPR158 57512 broad.mit.edu;mdanderson.org;bcgsc.ca 37 10 25464834 25464834 + Nonsense_Mutation SNP G G A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff SEC23IP 11196 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 10 121652313 121652313 + Missense_Mutation SNP A A C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff PACS1 55690 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 66008957 66008957 + Missense_Mutation SNP A A G novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff AMDHD2 51005 broad.mit.edu 37 16 2570776 2570776 + Frame_Shift_Del DEL T T - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff AMDHD2 51005 broad.mit.edu 37 16 2570778 2570778 + Frame_Shift_Del DEL T T - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff BCAR1 9564 broad.mit.edu 37 16 75263529 75263530 + Frame_Shift_Del DEL CT CT - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ZNF101 94039 broad.mit.edu;mdanderson.org;bcgsc.ca 37 19 19790063 19790063 + Missense_Mutation SNP T T C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff SLC4A5 57835 broad.mit.edu;mdanderson.org 37 2 74492256 74492256 + Missense_Mutation SNP G G C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff WASH2P 375260 broad.mit.edu 37 2 114356198 114356198 + RNA SNP G G A rs200217121 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TRIP12 9320 broad.mit.edu 37 2 230650546 230650546 + Missense_Mutation SNP A A C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff NCL 4691 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 232325533 232325533 + Missense_Mutation SNP T T C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff MYH7B 57644 broad.mit.edu;bcgsc.ca 37 20 33577581 33577581 + Missense_Mutation SNP G G A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff C20orf111 51526 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 20 42825743 42825743 + Nonsense_Mutation SNP G G C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff OTOL1 131149 broad.mit.edu 37 3 161220991 161220991 + Missense_Mutation SNP T T G novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff CAMK2N2 94032 broad.mit.edu 37 3 183977958 183977959 + Frame_Shift_Del DEL GG GG - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 GG GG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ZSWIM6 57688 broad.mit.edu 37 5 60822215 60822215 + Frame_Shift_Del DEL A A - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ADAMTS2 9509 broad.mit.edu 37 5 178634608 178634608 + Missense_Mutation SNP T T A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff CDK13 8621 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 40132819 40132819 + Missense_Mutation SNP C C G novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff RBM14-RBM4 100526737 broad.mit.edu 37 11 66384364 66384365 + Frame_Shift_Ins INS - - T novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff BCAR1 9564 broad.mit.edu 37 16 75263533 75263534 + Frame_Shift_Ins INS - - T novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff CCDC144B 284047 broad.mit.edu 37 17 18454926 18454927 + RNA INS - - C rs201304632 TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff LMNB2 84823 broad.mit.edu 37 19 2434856 2434857 + Frame_Shift_Ins INS - - A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff GIPC1 10755 broad.mit.edu 37 19 14593617 14593618 + Frame_Shift_Ins INS - - A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff WWC3 55841 broad.mit.edu 37 X 10085451 10085452 + Frame_Shift_Ins INS - - A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff CYP1A2 1544 ucsc.edu 37 15 75047426 75047426 + Silent SNP C C T rs2470890 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ABCE1 6059 mdanderson.org;bcgsc.ca 37 4 146044692 146044692 + Missense_Mutation SNP A A G novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ADAM19 8728 mdanderson.org 37 5 156997987 156997987 + Silent SNP T T C rs200503236 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff APOL5 80831 mdanderson.org 37 22 36122931 36122931 + Silent SNP G G A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff CEACAM5 1048 mdanderson.org 37 19 42213772 42213772 + Missense_Mutation SNP A A G rs12971352 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff FAM21B 55747 mdanderson.org 37 10 51859751 51859751 + Missense_Mutation SNP C C A rs2596979 bycluster;byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff FER 2241 mdanderson.org 37 5 108133967 108133967 + Silent SNP A A G rs2229085 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff FRG1B 284802 mdanderson.org 37 20 29628243 29628243 + RNA SNP T T C novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff GSTM5 2949 mdanderson.org 37 1 110257831 110257831 + Missense_Mutation SNP T T C rs67757008 alternate_allele TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff GSTM5 2949 mdanderson.org 37 1 110257835 110257836 + Silent DNP CT CT TC rs61744262 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff HLA-DRB5 3127 mdanderson.org 37 6 32487353 32487353 + Missense_Mutation SNP T T C rs114293611 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff NLGN4X 57502 mdanderson.org;bcgsc.ca 37 X 6069116 6069116 + Missense_Mutation SNP T T C rs145307351 TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff SATL1 340562 mdanderson.org 37 X 84363716 84363716 + Missense_Mutation SNP G G C rs141330942 TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TREML2 79865 mdanderson.org 37 6 41165977 41165977 + Silent SNP A A G rs41273770 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff USP10 9100 mdanderson.org 37 16 84797726 84797726 + Silent SNP G G A rs117002428 byfrequency;by1000genomes TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff CR1 1378 bcgsc.ca 37 1 207787796 207787796 + Missense_Mutation SNP T T C rs61822976 TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ZNF33A 7581 bcgsc.ca 37 10 38344700 38344700 + Missense_Mutation SNP C C G rs2505232 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff VPS18 57617 bcgsc.ca 37 15 41191887 41191887 + Missense_Mutation SNP G G T novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TMED1 11018 bcgsc.ca 37 19 10943860 10943866 + Frame_Shift_Del DEL CCAGCCG CCAGCCG - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 CCAGCCG CCAGCCG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff DNAJC13 23317 bcgsc.ca 37 3 132226100 132226100 + Missense_Mutation SNP A A G rs79953286 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ANKRD17 26057 bcgsc.ca 37 4 74012977 74012980 + Frame_Shift_Del DEL TAAC TAAC - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 TAAC TAAC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff INTS1 26173 bcgsc.ca 37 7 1513878 1513878 + Missense_Mutation SNP G G T novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff ANXA13 312 bcgsc.ca 37 8 124710664 124710664 + Missense_Mutation SNP C C T rs6995099 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff RMI1 80010 bcgsc.ca 37 9 86616443 86616443 + Missense_Mutation SNP T T C rs200956667 TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TSC1 7248 bcgsc.ca 37 9 135779085 135779094 + Frame_Shift_Del DEL CGGAGGAGCC CGGAGGAGCC - novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 CGGAGGAGCC CGGAGGAGCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff TBC1D25 4943 bcgsc.ca 37 X 48418659 48418659 + Missense_Mutation SNP G G A rs235836 byfrequency TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff PARD3B 117583 bcgsc.ca 37 2 206110538 206110539 + Frame_Shift_Ins INS - - A novel TCGA-KM-8639-01A-11D-2397-10 TCGA-KM-8639-10A-01D-2397-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff 0b811c6a-8f05-44bd-ac33-fb720d189e71 04e0d4a3-5826-41d0-9e72-19c5d4ce08ff