Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID PTPRE 5791 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 10 129866455 129866455 + Silent SNP C C T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 C10orf71 118461 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 10 50533936 50533936 + Missense_Mutation SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 MYPN 84665 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 10 69881358 69881358 + Missense_Mutation SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 TET1 80312 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 10 70426913 70426913 + Missense_Mutation SNP A A G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 SEC24C 9632 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 10 75519464 75519464 + Silent SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 SORL1 6653 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 11 121444978 121444978 + Missense_Mutation SNP G G C novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 OR5F1 338674 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 11 55762021 55762021 + Silent SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 FOLR2 2350 hgsc.bcm.edu;mdanderson.org 37 11 71932761 71932761 + Silent SNP C C T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 RBFOX3 146713 hgsc.bcm.edu 37 17 77111769 77111772 + Frame_Shift_Del DEL TACT TACT - novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 TACT TACT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 ZNF136 7695 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 19 12296934 12296934 + Missense_Mutation SNP A A C novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 SLC7A10 56301 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 19 33702229 33702229 + Silent SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 CTNNBL1 56259 broad.mit.edu;hgsc.bcm.edu 37 20 36470751 36470752 + Frame_Shift_Ins INS - - A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 NTSR1 4923 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 20 61386087 61386087 + Silent SNP G G T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 DNAH6 1768 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 2 84928427 84928427 + Silent SNP G G T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 LRRTM2 26045 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 5 138209476 138209476 + Silent SNP T T G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 CEP72 55722 hgsc.bcm.edu 37 5 612536 612536 + Silent SNP C C T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 GTF2H4 2968 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 6 30879492 30879492 + Missense_Mutation SNP T T A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 TMEM151B 441151 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 6 44243233 44243233 + Missense_Mutation SNP C C A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 AHCYL2 23382 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 129037098 129037098 + Missense_Mutation SNP G G T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 PRUNE2 158471 hgsc.bcm.edu 37 9 79324154 79324154 + Silent SNP A A T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 TLE4 7091 hgsc.bcm.edu 37 9 82191095 82191095 + Splice_Site DEL A A - novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 RBM10 8241 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 47041266 47041266 + Splice_Site SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 NCALD 83988 broad.mit.edu;hgsc.bcm.edu;mdanderson.org 37 8 102705065 102705065 + Silent SNP C C T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 CHIA 27159 broad.mit.edu;bcgsc.ca 37 1 111857960 111857960 + Missense_Mutation SNP G G A rs41445048 byfrequency TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 NOTCH2 4853 broad.mit.edu 37 1 120539668 120539668 + Missense_Mutation SNP T T A rs200464440 TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 POLR3C 10623 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 1 145594109 145594109 + Missense_Mutation SNP G G T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 WNT5B 81029 broad.mit.edu;bcgsc.ca 37 12 1742019 1742019 + Nonsense_Mutation SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 VAMP1 6843 broad.mit.edu 37 12 6574085 6574085 + Missense_Mutation SNP A A G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 STRAP 11171 broad.mit.edu 37 12 16047015 16047015 + Frame_Shift_Del DEL A A - novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 ASIC1 41 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 12 50472361 50472361 + Splice_Site SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 SOS2 6655 broad.mit.edu;mdanderson.org;bcgsc.ca 37 14 50619875 50619875 + Missense_Mutation SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 UNC13C 440279 broad.mit.edu 37 15 54557616 54557616 + Missense_Mutation SNP T T C novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 CEACAM5 1048 broad.mit.edu 37 19 42219764 42219764 + Missense_Mutation SNP A A G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 LCT 3938 broad.mit.edu 37 2 136555689 136555689 + Missense_Mutation SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 FZD7 8324 broad.mit.edu 37 2 202901005 202901005 + Silent SNP C C T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 NCOA6 23054 broad.mit.edu 37 20 33345744 33345744 + Silent SNP C C T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 CP 1356 broad.mit.edu 37 3 148939579 148939579 + Nonsense_Mutation DEL T T - novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 WDFY3 23001 broad.mit.edu 37 4 85630103 85630103 + Missense_Mutation SNP A A G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 RXFP3 51289 broad.mit.edu 37 5 33937368 33937368 + Missense_Mutation SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 SP8 221833 broad.mit.edu 37 7 20824941 20824943 + In_Frame_Del DEL GCC GCC - novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 GCC GCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 DDX56 54606 broad.mit.edu 37 7 44611269 44611269 + Missense_Mutation SNP A A G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 ASB4 51666 broad.mit.edu 37 7 95166910 95166910 + Missense_Mutation SNP T T C novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 EBF2 64641 broad.mit.edu 37 8 25744302 25744302 + Nonsense_Mutation SNP G G T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 RDH10 157506 broad.mit.edu 37 8 74235228 74235228 + Missense_Mutation SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 PTPN3 5774 broad.mit.edu 37 9 112219611 112219612 + Frame_Shift_Del DEL AT AT - novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 AT AT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 USP9X 8239 broad.mit.edu 37 X 41010226 41010226 + Missense_Mutation SNP G G T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 MLLT6 4302 broad.mit.edu 37 17 36873792 36873793 + Frame_Shift_Ins INS - - C novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 BIRC6 57448 ucsc.edu 37 2 32617105 32617105 + Splice_Site SNP A A G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 CRAMP1L 57585 ucsc.edu 37 16 1706144 1706144 + Silent SNP A A G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 HELZ2 85441 ucsc.edu 37 20 62196705 62196705 + Missense_Mutation SNP A A G novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 SMPD1 6609 ucsc.edu 37 11 6411941 6411941 + Missense_Mutation SNP C C T rs78250081 TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 ANKRD30BL 554226 mdanderson.org 37 2 132919192 132919192 + RNA SNP G G A rs111295191 TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 DPYS 1807 mdanderson.org 37 8 105478933 105478933 + Silent SNP G G A rs2298840 byfrequency TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 F2RL3 9002 mdanderson.org 37 19 17000632 17000632 + Missense_Mutation SNP G G A rs773902 byfrequency TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 FLG 2312 mdanderson.org 37 1 152280597 152280597 + Silent SNP A A G rs3126077 bycluster;byfrequency;by2hit2allele TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 HBQ1 3049 mdanderson.org 37 16 230578 230578 + Silent SNP A A G rs11863726 TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 HERC2 8924 mdanderson.org 37 15 28482158 28482158 + Silent SNP C C G rs3881419 by1000genomes TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 MUC4 4585 mdanderson.org 37 3 195508903 195508903 + Missense_Mutation SNP G G A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 NSUN5P2 260294 mdanderson.org 37 7 72419207 72419207 + RNA SNP G G A rs28434264 TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 PAK2 5062 mdanderson.org 37 3 196529982 196529982 + Missense_Mutation SNP A A G rs78043821 byfrequency TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 PAX1 5075 mdanderson.org 37 20 21695347 21695347 + Missense_Mutation SNP C C T rs17861061 byfrequency TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 RBMXL1 494115 mdanderson.org 37 1 89449135 89449135 + Silent SNP T T C novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 SLC35G6 643664 mdanderson.org 37 17 7386234 7386234 + Missense_Mutation SNP G G A rs200251320 byfrequency TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 SRRM2 23524 mdanderson.org 37 16 2813441 2813441 + Missense_Mutation SNP G G T novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 HNRNPCL1 343069 bcgsc.ca 37 1 12907358 12907358 + Missense_Mutation SNP T T C rs74587302 TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 PTPN3 5774 bcgsc.ca 37 9 112219612 112219613 + Frame_Shift_Del DEL AT AT - novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 AT AT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 CTNNBL1 56259 bcgsc.ca 37 20 36470752 36470753 + Frame_Shift_Ins INS - - A novel TCGA-KM-8477-01A-11D-2310-10 TCGA-KM-8477-10A-01D-2311-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282 4ecbfd89-393f-4126-aa1c-951a2c23ef89 685b8712-1fe3-49fc-8f73-a1d25a089282