Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID ZNF384 171017 hgsc.bcm.edu 37 12 6777081 6777081 + Silent SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 FAM194B 220081 hgsc.bcm.edu 37 13 46170737 46170737 + Missense_Mutation SNP T T C rs117004691 TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 AKT1S1 84335 broad.mit.edu;hgsc.bcm.edu;bcgsc.ca 37 19 50374973 50374973 + Missense_Mutation SNP T T A novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PCDHGB1 56104 hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 5 140731460 140731460 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PANK3 79646 hgsc.bcm.edu 37 5 167988517 167988517 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 KIAA0947 23379 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 5 5464930 5464930 + Missense_Mutation SNP A A G novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 CENPC1 1060 hgsc.bcm.edu 37 4 68357934 68357934 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 ELAVL4 1996 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 1 50659551 50659551 + Missense_Mutation SNP C C T rs138779266 TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 RAP1GAP2 23108 hgsc.bcm.edu 37 17 2901620 2901620 + Missense_Mutation SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 SLC39A10 57181 hgsc.bcm.edu;bcgsc.ca 37 2 196548601 196548601 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 SLC4A5 57835 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 2 74454137 74454137 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 ARL5B 221079 broad.mit.edu 37 10 18957460 18957460 + Silent SNP T T C rs148579997 alternate_allele TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 MASTL 84930 broad.mit.edu;bcgsc.ca 37 10 27447559 27447559 + Missense_Mutation SNP A A G novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 NRAP 4892 broad.mit.edu;bcgsc.ca 37 10 115348753 115348753 + Missense_Mutation SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PANX1 24145 broad.mit.edu 37 11 93913343 93913343 + Missense_Mutation SNP A A G novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 OR10G7 390265 broad.mit.edu;mdanderson.org 37 11 123909471 123909471 + Missense_Mutation SNP G G T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 ZNF384 171017 broad.mit.edu 37 12 6777102 6777102 + Frame_Shift_Del DEL C C - rs3835029 bycluster;by1000genomes;alternate_allele TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 CCNT1 904 broad.mit.edu;bcgsc.ca 37 12 49087549 49087549 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 UBC 7316 broad.mit.edu 37 12 125396280 125396280 + Missense_Mutation SNP G G A novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 KCNK10 54207 broad.mit.edu;mdanderson.org;bcgsc.ca 37 14 88652066 88652066 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 AQR 9716 broad.mit.edu 37 15 35219284 35219284 + Missense_Mutation SNP G G A novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 ZSCAN10 84891 broad.mit.edu 37 16 3139359 3139359 + Frame_Shift_Del DEL A A - novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PSG3 5671 broad.mit.edu 37 19 43233954 43233954 + Missense_Mutation SNP A A T rs1071709 TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 MEIS1 4211 broad.mit.edu 37 2 66667033 66667033 + Missense_Mutation SNP A A C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 ZNF638 27332 broad.mit.edu 37 2 71653715 71653715 + Silent SNP T T A novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 NCAPH 23397 broad.mit.edu;mdanderson.org;bcgsc.ca 37 2 97032995 97032995 + Missense_Mutation SNP G G C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 TIAM1 7074 broad.mit.edu 37 21 32639202 32639202 + Silent SNP G G T rs139712298 byfrequency;alternate_allele TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 C3orf36 80111 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 3 133647421 133647421 + Missense_Mutation SNP G G A novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 DDX4 54514 broad.mit.edu 37 5 55111195 55111195 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PCDHGA2 56113 broad.mit.edu;mdanderson.org 37 5 140720557 140720557 + Silent SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PCDH12 51294 broad.mit.edu 37 5 141331089 141331089 + Missense_Mutation SNP T T G novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PHACTR1 221692 broad.mit.edu;bcgsc.ca 37 6 12719071 12719071 + Missense_Mutation SNP G G A novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PEX3 8504 broad.mit.edu 37 6 143780275 143780275 + Missense_Mutation SNP A A G novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 TCP1 6950 broad.mit.edu;ucsc.edu;mdanderson.org 37 6 160200278 160200278 + Silent SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 GLI3 2737 broad.mit.edu 37 7 42079819 42079819 + Silent SNP G G T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 TAF1L 138474 broad.mit.edu;mdanderson.org 37 9 32632258 32632258 + Missense_Mutation SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 GDA 9615 broad.mit.edu 37 9 74828816 74828816 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 SPATA31C2 645961 broad.mit.edu 37 9 90747122 90747122 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 SURF4 6836 broad.mit.edu 37 9 136231848 136231848 + Silent SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 SSX3 10214 broad.mit.edu;mdanderson.org;bcgsc.ca 37 X 48213477 48213477 + Missense_Mutation SNP G G T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 DCP1B 196513 broad.mit.edu 37 12 2113565 2113566 + Frame_Shift_Ins INS - - C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 DDX54 79039 ucsc.edu 37 12 113623117 113623117 + Missense_Mutation SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 HELZ2 85441 ucsc.edu 37 20 62194103 62194103 + Silent SNP A A G rs3810484 byfrequency TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 KIAA1244 57221 ucsc.edu 37 6 138483249 138483249 + Missense_Mutation SNP A A G novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 LMCD1 29995 ucsc.edu;mdanderson.org 37 3 8579024 8579024 + Silent SNP G G A novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 CELSR3 1951 mdanderson.org 37 3 48694147 48694147 + Silent SNP G G A rs2286651 byfrequency TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 EEFSEC 60678 mdanderson.org 37 3 127872506 127872506 + Silent SNP C C T rs11711710 byfrequency TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 IFNA7 3444 mdanderson.org 37 9 21202040 21202040 + Missense_Mutation SNP G G C rs200751233 TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 IFNA7 3444 mdanderson.org 37 9 21202073 21202073 + Missense_Mutation SNP C C G rs76903863 byfrequency TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 KRT81 3887 mdanderson.org 37 12 52680993 52680993 + Silent SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 MUC21 394263 mdanderson.org 37 6 30954485 30954485 + Missense_Mutation SNP G G A rs140951082 TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 MUC21 394263 mdanderson.org 37 6 30955202 30955202 + Missense_Mutation SNP C C T rs2429294 TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 MUC4 4585 mdanderson.org 37 3 195509196 195509196 + Missense_Mutation SNP G G C rs76126602 TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 TONSL 4796 mdanderson.org 37 8 145661320 145661320 + Silent SNP G G A rs2721140 byfrequency TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 TTC9 23508 mdanderson.org 37 14 71109153 71109153 + Missense_Mutation SNP C C G rs4902834 byfrequency TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 FRG1B 284802 bcgsc.ca 37 20 29625947 29625947 + RNA SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 FILIP1L 11259 bcgsc.ca 37 3 99568907 99568907 + Missense_Mutation SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 PSMG4 389362 bcgsc.ca 37 6 3259345 3259345 + Missense_Mutation SNP T T G novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 KIAA1244 57221 bcgsc.ca 37 6 138583938 138583938 + Missense_Mutation SNP C C T novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 ESRP1 54845 bcgsc.ca 37 8 95683886 95683886 + Missense_Mutation SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 SPTAN1 6709 bcgsc.ca 37 9 131388829 131388829 + Missense_Mutation SNP T T C novel TCGA-KL-8340-01A-11D-2310-10 TCGA-KL-8340-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3 d113ce88-04ab-4675-b363-92f80c28de34 44123123-63e3-46bd-85ee-c66a37c942a3