Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID Tumor_Sample_UUID Matched_Norm_Sample_UUID CUBN 8029 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 10 16967262 16967262 + Silent SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb PTEN 5728 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 10 89711966 89711966 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb RASAL2 9462 hgsc.bcm.edu 37 1 178421771 178421771 + Silent SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb OBSCN 84033 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 228548164 228548164 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb MESDC1 59274 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 15 81295653 81295653 + Silent SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb NTRK3 4916 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 15 88727494 88727494 + Silent SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ZNF469 84627 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 16 88499219 88499219 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb TNFSF13 8741 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 7462433 7462433 + Missense_Mutation SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb CACNA1A 773 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 19 13476272 13476272 + Missense_Mutation SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb WDR62 284403 broad.mit.edu;hgsc.bcm.edu 37 19 36558850 36558851 + Frame_Shift_Ins INS - - AC novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb GPR27 2850 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 3 71804279 71804279 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb POU5F2 134187 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 5 93076393 93076393 + Missense_Mutation SNP G G C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ASIC3 9311 broad.mit.edu;hgsc.bcm.edu 37 7 150746017 150746017 + Silent SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb PTPRN2 5799 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 7 157931202 157931202 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb NOXA1 10811 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 9 140327707 140327707 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb NMRK1 54981 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 9 77681741 77681741 + Missense_Mutation SNP G G T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb CXorf59 286464 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 36117961 36117961 + Missense_Mutation SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb USP9X 8239 broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca 37 X 41002593 41002593 + Missense_Mutation SNP T T G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb UBR4 23352 broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org 37 1 19480348 19480349 + Missense_Mutation DNP GC GC TA novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb DLX2 1746 hgsc.bcm.edu 37 2 172966928 172966928 + Silent SNP G G T rs143444914 TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb PHF8 23133 hgsc.bcm.edu 37 X 54049206 54049206 + Missense_Mutation SNP G G T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb RC3H1 149041 broad.mit.edu 37 1 173912597 173912597 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb OR2T8 343172 broad.mit.edu 37 1 248084369 248084369 + Missense_Mutation SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb FAM35DP 439965 broad.mit.edu 37 10 47379799 47379799 + RNA SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb TTC40 54777 broad.mit.edu 37 10 134664800 134664800 + Missense_Mutation SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb PHRF1 57661 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 605169 605169 + Missense_Mutation SNP G G T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb MUC5B 727897 broad.mit.edu 37 11 1270385 1270385 + Missense_Mutation SNP C C G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb MED17 9440 broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca 37 11 93517753 93517753 + Missense_Mutation SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb LIMA1 51474 broad.mit.edu 37 12 50575718 50575718 + Missense_Mutation SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ALKBH2 121642 broad.mit.edu;ucsc.edu 37 12 109526037 109526037 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb HERC2 8924 broad.mit.edu 37 15 28447318 28447318 + Missense_Mutation SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb MAPK7 5598 broad.mit.edu;mdanderson.org 37 17 19284374 19284374 + Silent SNP C C T rs145605078 TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb SPAG5 10615 broad.mit.edu 37 17 26910630 26910630 + Missense_Mutation SNP G G T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb SOCS7 30837 broad.mit.edu 37 17 36520640 36520640 + Missense_Mutation SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb KRT20 54474 broad.mit.edu;mdanderson.org;bcgsc.ca 37 17 39041356 39041356 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb GAA 2548 broad.mit.edu 37 17 78082576 78082576 + Silent SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb LMAN1 3998 broad.mit.edu 37 18 57022610 57022610 + Missense_Mutation SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb HMHA1 23526 broad.mit.edu;mdanderson.org 37 19 1084344 1084344 + Silent SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ZNF257 113835 broad.mit.edu 37 19 22256335 22256335 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb FFAR1 2864 broad.mit.edu 37 19 35842701 35842701 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb THADA 63892 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 43507026 43507026 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb SMYD1 150572 broad.mit.edu 37 2 88387571 88387571 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb LOC150776 0 broad.mit.edu 37 2 132273252 132273252 + RNA SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb CCDC74A 90557 broad.mit.edu;mdanderson.org 37 2 132290278 132290278 + Missense_Mutation SNP G G A rs138310081 byfrequency TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb CCDC74A 90557 broad.mit.edu;mdanderson.org 37 2 132290352 132290352 + Missense_Mutation SNP G G C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb NEB 4703 broad.mit.edu 37 2 152350685 152350685 + Missense_Mutation SNP T T C rs200544122 TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb GAL3ST2 64090 broad.mit.edu;ucsc.edu 37 2 242741375 242741375 + Missense_Mutation SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb PATZ1 23598 broad.mit.edu 37 22 31741114 31741114 + Missense_Mutation SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb SFI1 9814 broad.mit.edu;ucsc.edu 37 22 32000342 32000342 + Silent SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb VILL 50853 broad.mit.edu 37 3 38040855 38040855 + Silent SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb VEPH1 79674 broad.mit.edu 37 3 157082297 157082297 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb AADAT 51166 broad.mit.edu 37 4 171009684 171009684 + Missense_Mutation SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb FAM153B 202134 broad.mit.edu 37 5 175530235 175530235 + Missense_Mutation SNP A A C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ZC4H2 55906 broad.mit.edu;bcgsc.ca 37 X 64137684 64137684 + Missense_Mutation SNP C C T rs149235340 byfrequency TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ATP11C 286410 broad.mit.edu 37 X 138823233 138823233 + Missense_Mutation SNP G G C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ADAM32 203102 ucsc.edu 37 8 38965348 38965348 + Silent SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb AIM1L 55057 ucsc.edu 37 1 26664510 26664510 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ATF6 22926 ucsc.edu 37 1 161790871 161790871 + Silent SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb HDAC4 9759 ucsc.edu 37 2 240033259 240033259 + Silent SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb KATNB1 10300 ucsc.edu 37 16 57788846 57788846 + Silent SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb MEGF10 84466 ucsc.edu 37 5 126755867 126755867 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb MIR199B 406978 ucsc.edu;mdanderson.org 37 9 131007047 131007047 + RNA SNP C C G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb PRMT7 54496 ucsc.edu 37 16 68373380 68373380 + Silent SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb R3HCC1L 27291 ucsc.edu;bcgsc.ca 37 10 99991273 99991273 + Missense_Mutation SNP C C T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb RGPD4 285190 ucsc.edu 37 2 108487266 108487266 + Missense_Mutation SNP G G A rs3868856 TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb RMND1 55005 ucsc.edu 37 6 151744763 151744763 + Silent SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb STRN 6801 ucsc.edu 37 2 37094995 37094995 + Silent SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ZBBX 79740 ucsc.edu 37 3 166960302 166960302 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb PABPC3 5042 mdanderson.org 37 13 25670907 25670907 + Missense_Mutation SNP C C A rs76264750 byfrequency TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb PRDM9 56979 mdanderson.org 37 5 23527637 23527637 + Missense_Mutation SNP A A C rs61051796 TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb UBR4 23352 bcgsc.ca 37 1 19480348 19480348 + Missense_Mutation SNP G G T novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb UBR4 23352 bcgsc.ca 37 1 19480349 19480349 + Missense_Mutation SNP C C A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb ITGA3 3675 bcgsc.ca 37 17 48165656 48165656 + Missense_Mutation SNP A A G novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb SMURF2 64750 bcgsc.ca 37 17 62579654 62579654 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb HM13 81502 bcgsc.ca 37 20 30149459 30149459 + Missense_Mutation SNP T T C novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb COX2 5743 bcgsc.ca 37 MT 7887 7887 + Missense_Mutation SNP G G A novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb WDR62 284403 bcgsc.ca 37 19 36558851 36558852 + Nonsense_Mutation INS - - AC novel TCGA-KL-8323-01A-21D-2310-10 TCGA-KL-8323-11A-01D-2310-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb fae88d21-171c-4df4-b258-3c5948a1034b f5c7fb67-5906-4db0-ad0d-129df8e065cb