Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
ZC3H18	124245	hgsc.bcm.edu	37	16	88675458	88675461	+	In_Frame_Del	DEL	GAGT	GAGT	-	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	GAGT	GAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	131.0	13.0	167.0	0.0	0.0992366	0	.	.	none	.	ZC3H18	90	.	NM_144604	exon7	c.1204_1206del	p.402_402del	.	.	PASS	Atlas-Indel
HIST1H1D	3007	hgsc.bcm.edu	37	6	26234939	26234939	+	Missense_Mutation	SNP	C	C	T	rs2050949	bycluster;byfrequency;byhapmap	TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	195.0	10.0	201.0	1.0	0.0512821	0.00497512	C|0.998;T|0.002	0.002	strong	HIST1H1D,colon,carcinoma,+2,1	HIST1H1D	40	1	NM_005320	exon1	c.G223A	p.E75K	TTTTTTCTACATC	.	scavenged	Atlas-SNP
TBC1D8B	54885	hgsc.bcm.edu	37	X	106116883	106116883	+	Silent	SNP	T	T	A	rs140391999	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	236.0	20.0	232.0	0.0	0.0847458	0	T|0.999;C|0.001	.	alt	.	TBC1D8B	181	.	NM_017752	exon21	c.T3051A	p.A1017A	CATTGCTGTTGTA	.	PASS	Atlas-SNP
DCAF8L2	347442	hgsc.bcm.edu	37	X	27766417	27766417	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	227.0	14.0	265.0	0.0	0.061674	0	.	.	none	.	DCAF8L2	79	.	NM_001136533	exon1	c.A1405G	p.N469D	AGAAATAATACCA	.	PASS	Atlas-SNP
AMER1	139285	hgsc.bcm.edu	37	X	63412763	63412763	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	125.0	10.0	146.0	0.0	0.08	0	.	.	none	.	.	.	.	NM_152424	exon2	c.G404T	p.G135V	AAAGCCCCATGGG	.	PASS	Atlas-SNP
ADRM1	11047	hgsc.bcm.edu	37	20	60878686	60878686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	35.0	6.0	30.0	0.0	0.171429	0	.	.	none	.	ADRM1	28	.	NM_175573	exon2	c.A62G	p.K21R	CCAACAAGTACTT	.	PASS	Atlas-SNP
GNPTAB	79158	hgsc.bcm.edu	37	12	102158979	102158979	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	158.0	11.0	147.0	0.0	0.0696203	0	.	.	none	GNPTAB,NS,carcinoma,-1,1	GNPTAB	120	1	NM_024312	exon13	c.C1716T	p.A572A	TCTTTTGGCTACT	.	PASS	Atlas-SNP
GPR82	27197	hgsc.bcm.edu	37	X	41586775	41586775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	192.0	16.0	216.0	0.0	0.0833333	0	.	.	none	.	GPR82	52	.	NM_080817	exon3	c.A496G	p.I166V	CTGGGCATAATCA	.	PASS	Atlas-SNP
ERGIC2	51290	hgsc.bcm.edu	37	12	29514613	29514613	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	143.0	8.0	131.0	0.0	0.0559441	0	.	.	none	ERGIC2,NS,carcinoma,-2,1	ERGIC2	29	1	NM_016570	exon6	c.A339G	p.V113V	ATCAAATACTGTC	.	PASS	Atlas-SNP
SIM2	6493	hgsc.bcm.edu	37	21	38072069	38072069	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	92.0	5.0	105.0	0.0	0.0543478	0	.	.	none	.	SIM2	55	.	NM_005069	exon1	c.C23T	p.A8V	AGAATGCGGCCAA	.	PASS	Atlas-SNP
SH3PXD2A	9644	hgsc.bcm.edu	37	10	105362350	105362350	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	104.0	5.0	113.0	0.0	0.0480769	0	.	.	none	.	SH3PXD2A	90	.	NM_014631	exon14	c.C2541T	p.S847S	CCACCCGCTCTCC	.	PASS	Atlas-SNP
CCDC88C	440193	hgsc.bcm.edu	37	14	91883122	91883122	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	88.0	6.0	87.0	0.0	0.0681818	0	.	.	none	.	CCDC88C	192	.	NM_001080414	exon2	c.T121G	p.L41V	CCACTAAATCCAT	.	PASS	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	37	20	52198348	52198348	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	259.0	24.0	221.0	0.0	0.0926641	0	.	.	none	.	ZNF217	227	.	NM_006526	exon1	c.A1018T	p.S340C	CACAACTGCCCTT	.	PASS	Atlas-SNP
UACA	55075	hgsc.bcm.edu	37	15	70976724	70976724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	140.0	7.0	182.0	0.0	0.05	0	.	.	none	UACA_ENST00000322954,colon,carcinoma,+1,2	UACA	235	2	NM_018003	exon8	c.A664G	p.N222D	CACCATTTTTAAT	.	PASS	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	37	9	35399645	35399645	+	Splice_Site	SNP	G	G	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	61.0	6.0	59.0	0.0	0.0983607	0	.	.	none	.	UNC13B	153	.	NM_006377	exon35	c.4009-1G>T	.	TGAACAGGATCAC	.	PASS	Atlas-SNP
FLG	2312	hgsc.bcm.edu	37	1	152280084	152280084	+	Silent	SNP	G	G	A	rs200015722	bycluster	TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	199.0	15.0	225.0	0.0	0.0753769	0	G|0.999;A|0.001	0.001	weak	.	FLG	900	.	NM_002016	exon3	c.C7278T	p.S2426S	ATGGGCGGACTCA	.	PASS	Atlas-SNP
EIF2B5	8893	hgsc.bcm.edu	37	3	183853228	183853228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	151.0	7.0	171.0	0.0	0.0463576	0	.	.	none	.	EIF2B5	62	.	NM_003907	exon1	c.C55T	p.R19C	AACAAGCGCAGCG	.	PASS	Atlas-SNP
GPR55	9290	hgsc.bcm.edu	37	2	231774792	231774792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	80.0	4.0	80.0	0.0	0.05	0	.	.	none	GPR55,colon,carcinoma,+1,1	GPR55	46	1	NM_005683	exon2	c.C886T	p.R296C	TCATGCGGAATTC	.	PASS	Atlas-SNP
F8	2157	hgsc.bcm.edu	37	X	154221377	154221377	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	231.0	16.0	320.0	0.0	0.0692641	0	.	.	none	.	F8	646	.	NM_000132	exon4	c.T435A	p.D145E	GACTTTATCATCT	.	PASS	Atlas-SNP
OR4D10	390197	hgsc.bcm.edu	37	11	59244978	59244978	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	175.0	17.0	147.0	0.0	0.0971429	0	.	.	none	.	OR4D10	120	.	NM_001004705	exon1	c.G76C	p.V26L	AGCTTAGTCTTAT	.	PASS	Atlas-SNP
NUMBL	9253	hgsc.bcm.edu	37	19	41173904	41173904	+	Silent	SNP	T	T	C	rs79658769		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	29.0	8.0	45.0	1.0	0.275862	0.0222222	C|1.000;|0.000	1.000	weak	NUMBL,colon,carcinoma,0,2	NUMBL	49	2	NM_004756	exon10	c.A1299G	p.Q433Q	TTGCTGTTGCTGC	.	scavenged	Atlas-SNP
ATRX	546	hgsc.bcm.edu	37	X	76907651	76907651	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	255.0	15.0	303.0	0.0	0.0588235	0	.	.	none	.	ATRX	833	.	NM_000489	exon15	c.C4510T	p.R1504X	GTTTTCGTCTCTC	.	PASS	Atlas-SNP
LTB	4050	hgsc.bcm.edu	37	6	31548738	31548738	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	51.0	4.0	58.0	0.0	0.0784314	0	.	.	none	.	LTB	19	.	NM_002341	exon4	c.C483T	p.S161S	CAGAGAGCTGCGC	.	PASS	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31326209	31326209	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	110.0	7.0	164.0	0.0	0.0636364	0	.	.	none	.	ASXL3	405	.	NM_030632	exon12	c.C6397T	p.P2133S	CAAAAGCCTTTTA	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216424362	216424362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	103.0	7.0	124.0	0.0	0.0679612	0	.	.	none	.	USH2A	1168	.	NM_007123	exon12	c.C2050A	p.Q684K	ACTCTTGTAGATT	.	PASS	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	37	3	65425603	65425603	+	Silent	SNP	T	T	C	rs62642828	byfrequency	TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	123.0	6.0	122.0	0.0	0.0487805	0	T|0.742;C|0.258	0.258	strong	.	MAGI1	481	.	NM_001033057	exon9	c.A1221G	p.Q407Q	CTGCTGTTGCTGC	.	PASS	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	37	20	8352096	8352096	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	86.0	5.0	82.0	0.0	0.0581395	0	.	.	none	PLCB1_ENST00000378641,caecum,carcinoma,0,2	PLCB1	394	2	NM_015192	exon3	c.A245C	p.E82A	CTCCCAAGGTAGG	.	PASS	Atlas-SNP
PROKR1	10887	hgsc.bcm.edu	37	2	68882188	68882188	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	88.0	6.0	88.0	0.0	0.0681818	0	.	.	none	.	PROKR1	69	.	NM_138964	exon2	c.G662A	p.W221X	AGATCTGGCCTGT	.	PASS	Atlas-SNP
KAT2B	8850	hgsc.bcm.edu	37	3	20178459	20178459	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	100.0	7.0	141.0	0.0	0.07	0	.	.	none	KAT2B,trunk,malignant_melanoma,+1,1	KAT2B	73	1	NM_003884	exon12	c.A1775G	p.H592R	TGAATCATTTGAA	.	PASS	Atlas-SNP
TET1	80312	hgsc.bcm.edu	37	10	70405864	70405864	+	Silent	SNP	A	A	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	121.0	14.0	115.0	0.0	0.115702	0	.	.	none	.	TET1	255	.	NM_030625	exon4	c.A3378G	p.K1126K	ACAGAAACCACCT	.	PASS	Atlas-SNP
COPS3	8533	hgsc.bcm.edu	37	17	17163724	17163724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	173.0	19.0	173.0	0.0	0.109827	0	.	.	none	.	COPS3	41	.	NM_003653	exon8	c.G827A	p.R276Q	AGGTTTCGGAGTT	.	PASS	Atlas-SNP
TECPR2	9895	hgsc.bcm.edu	37	14	102894692	102894692	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	297.0	14.0	305.0	0.0	0.047138	0	.	.	none	.	TECPR2	114	.	NM_001172631	exon7	c.A1057G	p.S353G	ATTTCAAGCAGGC	.	PASS	Atlas-SNP
ATG4A	115201	hgsc.bcm.edu	37	X	107396261	107396261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	469.0	33.0	565.0	0.0	0.0703625	0	.	.	none	.	ATG4A	68	.	NM_052936	exon12	c.C1070T	p.S357L	ATCCATCACACTG	.	PASS	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	37	20	52193210	52193210	+	Missense_Mutation	SNP	G	G	A	rs369074794		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	160.0	18.0	174.0	0.0	0.1125	0	.	.	weak	.	ZNF217	227	.	NM_006526	exon3	c.C2093T	p.P698L	ATTGCCGGGCAAT	.	PASS	Atlas-SNP
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	rs199957151		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	33.0	4.0	11.0	0.0	0.121212	0	.	.	weak	KRTAP4-7,NS,carcinoma,+1,1	KRTAP4-7	49	1	NM_033061	exon1	c.G338C	p.S113T	GCCCCAGCTGCTG	.	scavenged	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	37	18	14797834	14797834	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	258.0	19.0	281.0	0.0	0.0736434	0	.	.	none	.	ANKRD30B	237	.	NM_001145029	exon20	c.C2010T	p.D670D	AAAGGACAGAGAA	.	PASS	Atlas-SNP
FBXO38	81545	hgsc.bcm.edu	37	5	147813265	147813265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	226.0	10.0	275.0	0.0	0.0442478	0	.	.	none	.	FBXO38	115	.	NM_030793	exon17	c.T2597C	p.V866A	ATCTAGTGCTAAA	.	PASS	Atlas-SNP
OGG1	4968	hgsc.bcm.edu	37	3	9792009	9792009	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	119.0	12.0	110.0	0.0	0.10084	0	.	.	none	.	OGG1	57	.	NM_016819	exon1	c.T39G	p.H13Q	GGGGCATCGTACT	.	PASS	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	37	20	52198483	52198483	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	155.0	10.0	172.0	0.0	0.0645161	0	.	.	none	.	ZNF217	227	.	NM_006526	exon1	c.A883C	p.T295P	GGAAGGTGGTGAA	.	PASS	Atlas-SNP
GRIN3A	116443	hgsc.bcm.edu	37	9	104449271	104449271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	172.0	12.0	169.0	0.0	0.0697674	0	.	.	none	.	GRIN3A	186	.	NM_133445	exon2	c.C911T	p.T304I	TCCTGGGTGGAGG	.	PASS	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128751013	128751013	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	53.0	4.0	56.0	0.0	0.0754717	0	.	.	none	.	MYC	168	.	NM_002467	exon2	c.A550T	p.S184C	GGCCACAGCGTCT	.	PASS	Atlas-SNP
ABCA12	26154	hgsc.bcm.edu	37	2	215855677	215855677	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	87.0	4.0	92.0	0.0	0.045977	0	.	.	none	.	ABCA12	368	.	NM_173076	exon24	c.A3373C	p.T1125P	CGATGGTAACCAG	.	PASS	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	37	2	109392255	109392255	+	Missense_Mutation	SNP	T	T	G	rs367864778		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	100.0	5.0	138.0	0.0	0.05	0	.	.	weak	.	RANBP2	488	.	NM_006267	exon24	c.T8360G	p.V2787G	TGATGGTACCTTC	.	PASS	Atlas-SNP
GPD2	2820	hgsc.bcm.edu	37	2	157369859	157369859	+	Missense_Mutation	SNP	C	C	T	rs143467322		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	166.0	7.0	170.0	0.0	0.0421687	0	C|1.000;T|0.000	0.000	weak	.	GPD2	59	.	NM_001083112	exon6	c.C512T	p.P171L	AGTTACCTTACTA	.	PASS	Atlas-SNP
FAM120A	23196	hgsc.bcm.edu	37	9	96318697	96318697	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	171.0	15.0	155.0	0.0	0.0877193	0	.	.	none	.	FAM120A	105	.	NM_014612	exon13	c.T2308G	p.S770A	CAGCTATCAGCTC	.	PASS	Atlas-SNP
BCAP29	55973	hgsc.bcm.edu	37	7	107236323	107236323	+	Missense_Mutation	SNP	G	G	A	rs115169101	bycluster;by1000genomes	TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	202.0	10.0	220.0	0.0	0.049505	0	G|1.000;A|0.000	0.000	strong	BCAP29,colon,carcinoma,+1,1	BCAP29	46	1	NM_018844	exon5	c.G356A	p.R119H	TGAGACGTCTGGT	.	PASS	Atlas-SNP
DOPEY1	23033	hgsc.bcm.edu	37	6	83849764	83849764	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	169.0	8.0	208.0	0.0	0.0473373	0	.	.	none	.	DOPEY1	190	.	NM_015018	exon22	c.T5166C	p.T1722T	TCTTACTCTTTTG	.	PASS	Atlas-SNP
NUBPL	80224	hgsc.bcm.edu	37	14	32142594	32142594	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	353.0	17.0	382.0	0.0	0.0481586	0	.	.	none	.	NUBPL	21	.	NM_025152	exon5	c.T416G	p.I139S	ATGGTATTGCTTG	.	PASS	Atlas-SNP
RNF19A	25897	hgsc.bcm.edu	37	8	101276899	101276899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	108.0	8.0	114.0	0.0	0.0740741	0	.	.	none	.	RNF19A	67	.	NM_015435	exon7	c.G1306A	p.G436S	TCTTACCTACAGT	.	PASS	Atlas-SNP
SMPDL3A	10924	hgsc.bcm.edu	37	6	123116916	123116916	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	242.0	10.0	265.0	0.0	0.0413223	0	.	.	none	.	SMPDL3A	31	.	NM_006714	exon2	c.T207C	p.N69N	TGCAAATGCCTCC	.	PASS	Atlas-SNP
B2M	567	hgsc.bcm.edu	37	15	45003779	45003779	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	95.0	7.0	81.0	0.0	0.0736842	0	.	.	none	B2M,colon,carcinoma,0,2	B2M	99	2	NM_004048	exon1	c.T35C	p.L12P	TCGCGCTACTCTC	.	PASS	Atlas-SNP
ELF4	2000	hgsc.bcm.edu	37	X	129201410	129201410	+	Silent	SNP	C	C	T	rs369363653		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	146.0	9.0	139.0	0.0	0.0616438	0	.	.	weak	.	ELF4	67	.	NM_001421	exon9	c.G1278A	p.T426T	CAGCACCGTGGTC	.	PASS	Atlas-SNP
TBC1D1	23216	hgsc.bcm.edu	37	4	38053568	38053568	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	144.0	27.0	147.0	0.0	0.1875	0	.	.	none	.	TBC1D1	94	.	NM_001253912	exon12	c.T1959C	p.S653S	TCAGTCTTCAGCT	.	PASS	Atlas-SNP
FBP2	8789	hgsc.bcm.edu	37	9	97346890	97346890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	78.0	8.0	64.0	0.0	0.102564	0	.	.	none	.	FBP2	26	.	NM_003837	exon3	c.C395G	p.S132C	CCGATGGAGGCCA	.	PASS	Atlas-SNP
HTATSF1	27336	hgsc.bcm.edu	37	X	135593333	135593333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	139.0	10.0	124.0	0.0	0.0719424	0	.	.	none	.	HTATSF1	66	.	NM_001163280	exon10	c.G1429A	p.E477K	GGGTTTGAAGGCA	.	PASS	Atlas-SNP
TMSB4X	7114	hgsc.bcm.edu	37	X	12994394	12994394	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	323.0	20.0	348.0	0.0	0.0619195	0	.	.	none	.	TMSB4X	3	.	NM_021109	exon2	c.C14G	p.P5R	ACAAACCCGATAT	.	PASS	Atlas-SNP
IL13RA1	3597	hgsc.bcm.edu	37	X	117907928	117907928	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	92.0	6.0	89.0	0.0	0.0652174	0	.	.	none	.	IL13RA1	41	.	NM_001560	exon9	c.T1096A	p.Y366N	CTGCTTTACCTAA	.	PASS	Atlas-SNP
PIKFYVE	200576	hgsc.bcm.edu	37	2	209218719	209218719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	128.0	7.0	150.0	0.0	0.0546875	0	.	.	none	.	PIKFYVE	223	.	NM_015040	exon40	c.A5942G	p.K1981R	TCCTAAAGATGGT	.	PASS	Atlas-SNP
PDLIM4	8572	hgsc.bcm.edu	37	5	131607911	131607911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	52.0	6.0	44.0	0.0	0.115385	0	.	.	none	.	PDLIM4	22	.	NM_003687	exon7	c.G982A	p.E328K	AAGGTGGAACTCG	.	PASS	Atlas-SNP
FSIP2	401024	hgsc.bcm.edu	37	2	186671112	186671112	+	Silent	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	195.0	8.0	206.0	0.0	0.0410256	0	.	.	none	.	FSIP2	251	.	NM_173651	exon17	c.T17346G	p.S5782S	ATCTTCTTCTCCA	.	PASS	Atlas-SNP
GPR82	27197	hgsc.bcm.edu	37	X	41586752	41586752	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	208.0	18.0	228.0	0.0	0.0865385	0	.	.	none	.	GPR82	52	.	NM_080817	exon3	c.A473C	p.Y158S	GCATTTACATATG	.	PASS	Atlas-SNP
RBM10	8241	hgsc.bcm.edu	37	X	47045745	47045745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	204.0	16.0	167.0	0.0	0.0784314	0	.	.	none	.	RBM10	117	.	NM_001204468	exon23	c.G2821A	p.G941S	GGCAGCGGCCTGG	.	PASS	Atlas-SNP
PLCZ1	89869	hgsc.bcm.edu	37	12	18841114	18841114	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	93.0	7.0	94.0	0.0	0.0752688	0	.	.	none	.	PLCZ1	107	.	NM_033123	exon13	c.A1500G	p.S500S	GTTAGATGATGAA	.	PASS	Atlas-SNP
ADRM1	11047	hgsc.bcm.edu	37	20	60878716	60878716	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	37.0	7.0	36.0	0.0	0.189189	0	.	.	none	.	ADRM1	28	.	NM_175573	exon2	c.T92G	p.M31R	GAAAGATGTCCCT	.	PASS	Atlas-SNP
OR4C13	283092	hgsc.bcm.edu	37	11	49974680	49974680	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	185.0	9.0	227.0	0.0	0.0486486	0	.	.	none	.	OR4C13	96	.	NM_001001955	exon1	c.T706A	p.S236T	GCCCTCTCTACCT	.	PASS	Atlas-SNP
C4orf48	401115	hgsc.bcm.edu	37	4	2044128	2044128	+	Missense_Mutation	SNP	C	C	T	rs570712	bycluster;by1000genomes	TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	7.0	7.0	0.0	0.0	1	.	C|0.139;T|0.861	0.861	strong	.	C4orf48	4	.	NM_001168243	exon2	c.C149T	p.P50L	CGCCGCCGCTGCT	.	PASS	Atlas-SNP
KPRP	448834	hgsc.bcm.edu	37	1	152733644	152733644	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	83.0	6.0	93.0	0.0	0.0722892	0	.	.	none	.	KPRP	152	.	NM_001025231	exon2	c.C1580G	p.A527G	CCGAAGCTCCCTA	.	PASS	Atlas-SNP
WDR53	348793	hgsc.bcm.edu	37	3	196281315	196281315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	619.0	28.0	669.0	0.0	0.0452342	0	.	.	none	.	WDR53	26	.	NM_182627	exon4	c.A844G	p.T282A	GTTTTGTGGGACT	.	PASS	Atlas-SNP
INTS3	65123	hgsc.bcm.edu	37	1	153741377	153741377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	84.0	4.0	70.0	0.0	0.047619	0	.	.	none	.	INTS3	83	.	NM_023015	exon22	c.T2253G	p.D751E	TCCAGATGAAACC	.	PASS	Atlas-SNP
VMA21	203547	hgsc.bcm.edu	37	X	150573449	150573449	+	Silent	SNP	C	C	G	rs139323488	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	179.0	11.0	145.0	0.0	0.0614525	0	C|0.996;T|0.004	.	alt	.	VMA21	17	.	NM_001017980	exon3	c.C225G	p.A75A	GGTCGCCGTCCAT	.	PASS	Atlas-SNP
FAM13C	220965	hgsc.bcm.edu	37	10	61022354	61022354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	159.0	10.0	190.0	0.0	0.0628931	0	.	.	none	FAM13C_ENST00000422313,NS,carcinoma,0,2	FAM13C	124	2	NM_198215	exon10	c.C1076T	p.P359L	TTTCTAGGTGGAC	.	PASS	Atlas-SNP
ZNF607	84775	hgsc.bcm.edu	37	19	38189064	38189064	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	188.0	8.0	206.0	0.0	0.0425532	0	.	.	none	.	ZNF607	82	.	NM_032689	exon5	c.T1968G	p.S656R	ATGGCTACTATTA	.	PASS	Atlas-SNP
RFC4	5984	hgsc.bcm.edu	37	3	186507948	186507948	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	241.0	20.0	224.0	0.0	0.0829876	0	.	.	none	.	RFC4	54	.	NM_181573	exon10	c.A979G	p.I327V	CTGTGATAATAGA	.	PASS	Atlas-SNP
DSP	1832	hgsc.bcm.edu	37	6	7584037	7584037	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	57.0	6.0	69.0	0.0	0.105263	0	.	.	none	.	DSP	306	.	NM_004415	exon24	c.T6542G	p.V2181G	AGAAGGTCAGTTA	.	PASS	Atlas-SNP
VIT	5212	hgsc.bcm.edu	37	2	37035632	37035632	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TV-01A-11D-A382-10	TCGA-GS-A9TV-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	856d7068-5d31-4bc0-b50c-e02ed89ced3f	a592e794-fb42-4d16-95b3-c2059390b14c	95.0	8.0	94.0	0.0	0.0842105	0	.	.	none	.	VIT	138	.	NM_053276	exon15	c.C1407T	p.N469N	AACAAACGGCTTC	.	PASS	Atlas-SNP