Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TTotCov TVarCov NTotCov NVarCov TVarRat NVarRat dbSNP_AF dbSNP_PopFreq dbSNP_Strength COSMIC_Codon COSMIC_Gene COSMIC_Gene_Freq COSMIC_Site_Freq Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target Confidence Algorithm BCOR 54880 hgsc.bcm.edu 37 X 39911471 39911471 + Frame_Shift_Del DEL C C - novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 163.0 84.0 216.0 0.0 0.515 . . . none . BCOR 351 . NM_001123385 exon15 c.5160delT p.S1720fs . . PASS Pindel,Atlas-Indel MAB21L1 4081 hgsc.bcm.edu 37 13 36050453 36050454 + RNA INS - - GCTGCTGCTGCT novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 113.0 10.0 118.0 0.0 0.0884956 0 . . none . MAB21L1 52 . . . . . . . PASS Atlas-Indel TAS2R19 259294 hgsc.bcm.edu 37 12 11174305 11174306 + Frame_Shift_Del DEL GT GT - novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 81.0 35.0 116.0 0.0 0.432 . . . none . TAS2R19 30 . NM_176888 exon1 c.866_867del p.289_289del . . PASS Pindel,Atlas-Indel CIITA 4261 hgsc.bcm.edu 37 16 11000690 11000691 + Frame_Shift_Del DEL TG TG - novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 TG TG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 73.0 24.0 67.0 0.0 0.329 . . . none . CIITA 92 . NM_000246 exon11 c.1340_1341del p.447_447del . . PASS Pindel,Atlas-Indel ARHGAP21 57584 hgsc.bcm.edu 37 10 24909678 24909679 + Frame_Shift_Ins INS - - G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 141.0 55.0 160.0 0.0 0.390071 0 . . none . ARHGAP21 185 . NM_020824 exon9 c.1146_1147insC p.Q382fs . . PASS Atlas-Indel CCDC109B 55013 hgsc.bcm.edu 37 4 110605694 110605699 + In_Frame_Del DEL CTGGCT CTGGCT - novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 CTGGCT CTGGCT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 203.0 43.0 228.0 0.0 0.212 . . . none . CCDC109B 47 . NM_017918 exon6 c.707_712del p.236_238del . . PASS Pindel,Atlas-Indel OSBPL3 26031 hgsc.bcm.edu 37 7 24843988 24843991 + Frame_Shift_Del DEL TCTC TCTC - novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 TCTC TCTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 187.0 62.0 266.0 0.0 0.332 . . . none . OSBPL3 100 . NM_015550 exon22 c.2511_2514del p.837_838del . . PASS Pindel,Atlas-Indel MYO9B 4650 hgsc.bcm.edu 37 19 17308611 17308612 + Frame_Shift_Ins INS - - CG novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 50.0 13.0 58.0 0.0 0.260 . . . none . MYO9B 264 . NM_001130065 exon23 c.4057_4058insCG p.T1353fs . . PASS Pindel,Atlas-Indel C10orf71 118461 hgsc.bcm.edu 37 10 50533936 50533937 + Frame_Shift_Ins INS - - C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 34.0 11.0 73.0 0.0 0.323529 0 . . none . C10orf71 179 . NM_001135196 exon3 c.3346_3347insC p.A1116fs . . PASS Atlas-Indel IGLL5 100423062 hgsc.bcm.edu 37 22 23230309 23230310 + In_Frame_Ins INS - - TTT novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 116.0 22.0 100.0 0.0 0.190 . . . none . IGLL5 26 . NM_001178126 exon1 c.76_77insTTT p.L26delinsLL . . PASS Pindel,Atlas-Indel PIM1 5292 hgsc.bcm.edu 37 6 37138592 37138592 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 54.0 24.0 60.0 0.0 0.444444 0 . . none . PIM1 71 . NM_001243186 exon2 c.G399A p.P133P GGGCCCGCTACTG . PASS Atlas-SNP PRDM9 56979 hgsc.bcm.edu 37 5 23527377 23527377 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 127.0 41.0 178.0 0.0 0.322835 0 . . none PRDM9,colon,carcinoma,+1,1 PRDM9 344 1 NM_020227 exon11 c.G2180A p.R727Q GTGGGCGGGGCTT . PASS Atlas-SNP KLHL21 9903 hgsc.bcm.edu 37 1 6662386 6662386 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 16.0 8.0 41.0 0.0 0.5 0 . . none . KLHL21 27 . NM_014851 exon1 c.C492A p.H164Q GCCCACGTGGCGC . PASS Atlas-SNP ZNF608 57507 hgsc.bcm.edu 37 5 124079845 124079845 + Missense_Mutation SNP T T A rs371493737 alternate_allele TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 142.0 61.0 171.0 0.0 0.429577 0 . . alt . ZNF608 117 . NM_020747 exon1 c.A838T p.M280L CCAACATAGAGTT . PASS Atlas-SNP FAT3 120114 hgsc.bcm.edu 37 11 92577432 92577432 + Silent SNP G G C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 69.0 30.0 89.0 0.0 0.434783 0 . . none . FAT3 1822 . NM_001008781 exon18 c.G10899C p.V3633V TGATGTGGTCGTG . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37139104 37139104 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 95.0 46.0 110.0 0.0 0.484211 0 . . none . PIM1 71 . NM_001243186 exon4 c.C717T p.F239F CTTCTTCTGGCAG . PASS Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu 37 7 121652288 121652288 + Missense_Mutation SNP T T G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 109.0 55.0 146.0 0.0 0.504587 0 . . none . PTPRZ1 605 . NM_002851 exon12 c.T3188G p.V1063G AGATGGTTTACCC . PASS Atlas-SNP ESRRG 2104 hgsc.bcm.edu 37 1 216680418 216680418 + Missense_Mutation SNP C C G rs200999094 alternate_allele TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 150.0 69.0 205.0 0.0 0.46 0 C|0.999;T|0.001 . alt . ESRRG 111 . NM_001243518 exon8 c.G1276C p.A426P TGCCAGCTCGACG . PASS Atlas-SNP KLHL21 9903 hgsc.bcm.edu 37 1 6662376 6662376 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 14.0 8.0 37.0 0.0 0.571429 0 . . none . KLHL21 27 . NM_014851 exon1 c.C502T p.L168L CGCCCAGCTCGCC . PASS Atlas-SNP NUAK1 9891 hgsc.bcm.edu 37 12 106460866 106460866 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 99.0 25.0 110.0 1.0 0.252525 0.00909091 . . none NUAK1_ENST00000261402,NS,malignant_melanoma,-1,2 NUAK1 196 2 NM_014840 exon7 c.G1700A p.R567H GAAGGGCGGCTGT . scavenged Atlas-SNP OR9A4 130075 hgsc.bcm.edu 37 7 141618791 141618791 + Missense_Mutation SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 195.0 91.0 225.0 0.0 0.466667 0 . . none . OR9A4 58 . NM_001001656 exon1 c.T116C p.M39T CATTAATGGGAAA . PASS Atlas-SNP PDE3A 5139 hgsc.bcm.edu 37 12 20787920 20787920 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 51.0 20.0 74.0 0.0 0.392157 0 . . none . PDE3A 184 . NM_000921 exon8 c.A1931G p.E644G AAACAGAGTGCCT . PASS Atlas-SNP SEMA4A 64218 hgsc.bcm.edu 37 1 156146494 156146494 + Silent SNP G G A rs185601992 bycluster;by1000genomes TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 119.0 65.0 73.0 0.0 0.546219 0 G|0.999;A|0.001 0.001 strong . SEMA4A 75 . NM_001193300 exon15 c.G1992A p.P664P GGTCCCGTTGACC . PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu 37 19 58385793 58385793 + Missense_Mutation SNP C C T rs113623532 bycluster TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 348.0 54.0 229.0 0.0 0.155172 0 C|0.500;T|0.500 0.500 weak . ZNF814 93 . NM_001144989 exon3 c.G965A p.R322K TAAGGTCTTTTCC . PASS Atlas-SNP KIF17 57576 hgsc.bcm.edu 37 1 21031118 21031118 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 133.0 57.0 196.0 0.0 0.428571 0 . . none KIF17,NS,carcinoma,-2,1 KIF17 130 1 NM_001122819 exon5 c.G945A p.A315A GTTGTCCGCAGGC . PASS Atlas-SNP C10orf71 118461 hgsc.bcm.edu 37 10 50533942 50533942 + Missense_Mutation SNP G G C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 37.0 16.0 72.0 0.0 0.432432 0 . . none . C10orf71 179 . NM_001135196 exon3 c.G3352C p.V1118L GCCCTCGTGTGGG . PASS Atlas-SNP SLC12A1 6557 hgsc.bcm.edu 37 15 48500287 48500287 + Missense_Mutation SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 46.0 40.0 47.0 0.0 0.869565 0 . . none SLC12A1,NS,carcinoma,0,1 SLC12A1 243 1 NM_001184832 exon2 c.C371A p.P124H GTGGGCCCAAGGT . PASS Atlas-SNP CALHM2 51063 hgsc.bcm.edu 37 10 105209154 105209154 + Missense_Mutation SNP T T A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 41.0 14.0 25.0 0.0 0.341463 0 . . none . CALHM2 30 . NM_015916 exon3 c.A545T p.Y182F GACTCATACCTGA . PASS Atlas-SNP IRF2BP2 359948 hgsc.bcm.edu 37 1 234744253 234744253 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 61.0 29.0 58.0 0.0 0.47541 0 . . none . IRF2BP2 37 . NM_182972 exon1 c.G988A p.A330T TCAGGGCCGGCTC . PASS Atlas-SNP MYH2 4620 hgsc.bcm.edu 37 17 10430004 10430004 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 179.0 76.0 215.0 0.0 0.424581 0 . . none . MYH2 390 . NM_017534 exon30 c.C4099T p.L1367L TGGACAGTGCTCT . PASS Atlas-SNP STX16 8675 hgsc.bcm.edu 37 20 57227165 57227165 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 32.0 18.0 44.0 0.0 0.5625 0 . . none . STX16 36 . NM_001134772 exon1 c.A103G p.S35G ACCTCCAGCCCTC . PASS Atlas-SNP GPR125 166647 hgsc.bcm.edu 37 4 22389666 22389666 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 196.0 88.0 271.0 0.0 0.44898 0 . . none . GPR125 118 . NM_145290 exon19 c.C3628T p.R1210W CCAGCCGGCTTTT . PASS Atlas-SNP HMHA1 23526 hgsc.bcm.edu 37 19 1080926 1080926 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 92.0 41.0 81.0 0.0 0.445652 0 . . none . HMHA1 78 . NM_001258328 exon17 c.G2101T p.A701S CCGGTGGCCGTGC . PASS Atlas-SNP LHX5 64211 hgsc.bcm.edu 37 12 113901352 113901352 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 44.0 29.0 35.0 0.0 0.659091 0 . . none . LHX5 39 . NM_022363 exon5 c.C852T p.G284G GTAGTCGCCTTGG . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230403 23230403 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 102.0 45.0 112.0 0.0 0.441176 0 . . none . IGLL5 26 . NM_001178126 exon1 c.G170A p.G57E CAGTTGGAAGCAG . PASS Atlas-SNP ALG8 79053 hgsc.bcm.edu 37 11 77815052 77815052 + Silent SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 228.0 117.0 217.0 0.0 0.513158 0 . . none . ALG8 54 . NM_024079 exon12 c.T1323C p.S441S CGAAATACTATAT . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022420 32022420 + Nonsense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 78.0 33.0 89.0 0.0 0.423077 0 . . none . OSBPL10 160 . NM_017784 exon1 c.C252A p.Y84X GTTGGTGTATTTG . PASS Atlas-SNP OTX2 5015 hgsc.bcm.edu 37 14 57268664 57268664 + Missense_Mutation SNP C C G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 154.0 77.0 161.0 0.0 0.5 0 . . none . OTX2 47 . NM_001270525 exon3 c.G683C p.S228T ATGGGACTGAGTG . PASS Atlas-SNP TBL1XR1 79718 hgsc.bcm.edu 37 3 176756174 176756174 + Missense_Mutation SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 104.0 99.0 128.0 0.0 0.951923 0 . . none TBL1XR1,NS,carcinoma,0,1 TBL1XR1 87 1 NM_024665 exon11 c.G974T p.C325F GTACTACAAGAAG . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022391 32022391 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 70.0 34.0 77.0 0.0 0.485714 0 . . none . OSBPL10 160 . NM_017784 exon1 c.G281A p.R94K CGTTACCTGTTCT . PASS Atlas-SNP ZNF493 284443 hgsc.bcm.edu 37 19 21607740 21607740 + Missense_Mutation SNP A A C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 143.0 65.0 178.0 0.0 0.454545 0 . . none . ZNF493 178 . NM_001076678 exon4 c.A2279C p.K760T GACATAAGATAAT . PASS Atlas-SNP CUL1 8454 hgsc.bcm.edu 37 7 148454103 148454103 + Missense_Mutation SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 131.0 48.0 104.0 0.0 0.366412 0 . . none . CUL1 80 . NM_003592 exon4 c.T344C p.V115A AGAGTGTACTGAA . PASS Atlas-SNP VMP1 81671 hgsc.bcm.edu 37 17 57915672 57915672 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 231.0 114.0 211.0 1.0 0.493506 0.00473934 . . none . VMP1 49 . NM_030938 exon11 c.G991A p.G331S GGCATAGGTCCAT . PASS Atlas-SNP ITIH2 3698 hgsc.bcm.edu 37 10 7780636 7780636 + Silent SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 76.0 31.0 95.0 0.0 0.407895 0 . . none ITIH2,NS,neuroblastoma,0,1 ITIH2 144 1 NM_002216 exon16 c.C2010A p.A670A TTGGGCCAATCCT . PASS Atlas-SNP PCDH1 5097 hgsc.bcm.edu 37 5 141244191 141244191 + Missense_Mutation SNP A A T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 64.0 41.0 63.0 0.0 0.640625 0 . . none . PCDH1 119 . NM_032420 exon3 c.T1705A p.S569T CCAGAGATGTCTT . PASS Atlas-SNP LMF1 64788 hgsc.bcm.edu 37 16 919924 919924 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 67.0 37.0 82.0 0.0 0.552239 0 . . none . LMF1 42 . NM_022773 exon9 c.C1375T p.H459Y GGTAGTGGTACGG . PASS Atlas-SNP ADCK4 79934 hgsc.bcm.edu 37 19 41216028 41216028 + Silent SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 117.0 75.0 74.0 0.0 0.641026 0 . . none . ADCK4 92 . NM_001142555 exon5 c.C303A p.G101G CCCCAAGCCCACA . PASS Atlas-SNP BCR 613 hgsc.bcm.edu 37 22 23523322 23523322 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 78.0 31.0 69.0 0.0 0.397436 0 . . none . BCR 74 . NM_021574 exon1 c.C175T p.L59L ATCTACCTGCAGA . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022613 32022613 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 113.0 48.0 85.0 0.0 0.424779 0 . . none . OSBPL10 160 . NM_017784 exon1 c.G59A p.S20N CTGCTGCTGCGGC . PASS Atlas-SNP ITPKB 3707 hgsc.bcm.edu 37 1 226924565 226924565 + Nonsense_Mutation SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 46.0 22.0 26.0 0.0 0.478261 0 . . none . ITPKB 158 . NM_002221 exon2 c.G595T p.E199X TCCGTTCCTCGCT . PASS Atlas-SNP DSC3 1825 hgsc.bcm.edu 37 18 28587034 28587034 + Missense_Mutation SNP T T A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 220.0 57.0 226.0 0.0 0.259091 0 . . none . DSC3 225 . NM_024423 exon12 c.A1727T p.E576V AGTATTTCTGGTG . PASS Atlas-SNP FNDC3B 64778 hgsc.bcm.edu 37 3 172025174 172025174 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 82.0 42.0 103.0 0.0 0.512195 0 . . none . FNDC3B 118 . NM_001135095 exon10 c.C1083T p.S361S CAATTCCGTAAAG . PASS Atlas-SNP PHF2 5253 hgsc.bcm.edu 37 9 96416812 96416812 + Missense_Mutation SNP T T A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 42.0 15.0 64.0 0.0 0.357143 0 . . none . PHF2 113 . NM_005392 exon7 c.T907A p.Y303N AAATGCTACAAGT . PASS Atlas-SNP LIN28B 389421 hgsc.bcm.edu 37 6 105526426 105526426 + Missense_Mutation SNP C C T rs201716597 by1000genomes TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 34.0 30.0 58.0 0.0 0.882353 0 C|1.000;T|0.000 0.000 strong . LIN28B 17 . NM_001004317 exon4 c.C521T p.A174V CACCCGCGAGTTC . PASS Atlas-SNP FAM5B 57795 hgsc.bcm.edu 37 1 177250054 177250054 + Missense_Mutation SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 89.0 45.0 104.0 0.0 0.505618 0 . . none . FAM5B 191 . NM_021165 exon8 c.C1742A p.T581N ACAGCACCCTGGA . PASS Atlas-SNP ABHD3 171586 hgsc.bcm.edu 37 18 19283631 19283631 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 105.0 34.0 91.0 0.0 0.32381 0 . . none . ABHD3 32 . NM_138340 exon2 c.C240T p.Y80Y CGGGTAGTACGTT . PASS Atlas-SNP LAMA3 3909 hgsc.bcm.edu 37 18 21330979 21330979 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 267.0 86.0 210.0 0.0 0.322097 0 . . none . LAMA3 397 . NM_001127717 exon5 c.G782A p.R261H GCTTGCGTTTTCT . PASS Atlas-SNP RBBP7 5931 hgsc.bcm.edu 37 X 16881137 16881137 + Missense_Mutation SNP A A C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 193.0 177.0 191.0 0.0 0.917098 0 . . none . RBBP7 58 . NM_001198719 exon3 c.T380G p.V127G ATATGTACTCGAG . PASS Atlas-SNP POLR1A 25885 hgsc.bcm.edu 37 2 86302316 86302316 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 109.0 42.0 144.0 1.0 0.385321 0.00694444 . . none POLR1A,NS,carcinoma,0,1 POLR1A 137 1 NM_015425 exon12 c.C1448T p.A483V ATGACCGCTTGCC . scavenged Atlas-SNP SPATA9 83890 hgsc.bcm.edu 37 5 94994492 94994492 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 207.0 91.0 190.0 0.0 0.439614 0 . . none . SPATA9 17 . NM_031952 exon5 c.G600A p.E200E CATAGGCTCCGAA . PASS Atlas-SNP PKP1 5317 hgsc.bcm.edu 37 1 201252908 201252908 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 85.0 35.0 81.0 0.0 0.411765 0 . . none . PKP1 127 . NM_001005337 exon1 c.G78A p.P26P TTTGCCGTCGGAC . PASS Atlas-SNP LRRTM4 80059 hgsc.bcm.edu 37 2 77746080 77746080 + Silent SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 96.0 43.0 134.0 0.0 0.447917 0 . . none . LRRTM4 334 . NM_024993 exon3 c.C915A p.S305S TGTGATGGATATT . PASS Atlas-SNP COL21A1 81578 hgsc.bcm.edu 37 6 55924958 55924958 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 216.0 102.0 235.0 0.0 0.472222 0 . . none . COL21A1 201 . NM_030820 exon28 c.C2466T p.S822S ATGTTGGGACAGG . PASS Atlas-SNP AGTR2 186 hgsc.bcm.edu 37 X 115303934 115303934 + Missense_Mutation SNP T T G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 249.0 228.0 345.0 0.0 0.915663 0 . . none . AGTR2 62 . NM_000686 exon3 c.T401G p.F134C TTTTTTTTATCAC . PASS Atlas-SNP ROS1 6098 hgsc.bcm.edu 37 6 117686814 117686814 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 83.0 64.0 175.0 1.0 0.771084 0.00571429 . . none . ROS1 728 . NM_002944 exon19 c.T2903C p.L968P TTCCACAGGATTT . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230360 23230360 + Nonsense_Mutation SNP G G A rs6003368 byhapmap TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 101.0 47.0 104.0 0.0 0.465347 0 G|1.000;|0.000 . weak . IGLL5 26 . NM_001256296 exon1 c.G21A p.W7X CCAATGGTTGCAC . PASS Atlas-SNP C20orf194 25943 hgsc.bcm.edu 37 20 3302910 3302910 + Splice_Site SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 44.0 17.0 59.0 0.0 0.386364 0 . . none . C20orf194 83 . NM_001009984 exon17 c.1311-1G>T . ACAATTCTAGGAG . PASS Atlas-SNP RFX1 5989 hgsc.bcm.edu 37 19 14076565 14076565 + Silent SNP C C G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 50.0 27.0 66.0 0.0 0.54 0 . . none . RFX1 63 . NM_002918 exon15 c.G1986C p.L662L TTTGGGCAGTCGC . PASS Atlas-SNP PNLIPRP3 119548 hgsc.bcm.edu 37 10 118220524 118220524 + Silent SNP C C A rs199970109 alternate_allele TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 187.0 57.0 172.0 0.0 0.304813 0 C|0.999;T|0.001 . alt PNLIPRP3,NS,carcinoma,0,1 PNLIPRP3 101 1 NM_001011709 exon6 c.C612A p.V204V GGAAGTCAGGCTA . PASS Atlas-SNP MBOAT2 129642 hgsc.bcm.edu 37 2 9028160 9028160 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 456.0 218.0 531.0 1.0 0.47807 0.00188324 . . none MBOAT2,caecum,carcinoma,0,2 MBOAT2 36 2 NM_138799 exon5 c.G439A p.E147K GAATTTCGCAAGC . PASS Atlas-SNP NUF2 83540 hgsc.bcm.edu 37 1 163318812 163318812 + Missense_Mutation SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 276.0 124.0 369.0 0.0 0.449275 0 . . none . NUF2 138 . NM_145697 exon13 c.T1202C p.I401T AAAAAATTAAACT . PASS Atlas-SNP TIAM1 7074 hgsc.bcm.edu 37 21 32617950 32617950 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 99.0 51.0 90.0 0.0 0.515152 0 . . none . TIAM1 522 . NM_003253 exon7 c.G1438A p.D480N TGCCGTCGCTCTC . PASS Atlas-SNP CSMD1 64478 hgsc.bcm.edu 37 8 2964161 2964161 + Missense_Mutation SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 49.0 20.0 70.0 0.0 0.408163 0 . . none . CSMD1 1469 . NM_033225 exon46 c.G6838T p.D2280Y CAAAATCTCCTAG . PASS Atlas-SNP CCDC89 220388 hgsc.bcm.edu 37 11 85396761 85396761 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 92.0 44.0 109.0 0.0 0.478261 0 . . none . CCDC89 45 . NM_152723 exon1 c.G413A p.R138H TTGAAGCGGAGCA . PASS Atlas-SNP BBX 56987 hgsc.bcm.edu 37 3 107524323 107524323 + Missense_Mutation SNP A A C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 119.0 66.0 143.0 0.0 0.554622 0 . . none . BBX 156 . NM_001276286 exon17 c.A1836C p.K612N TTGTAAAACATTG . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37139045 37139045 + Missense_Mutation SNP C C G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 76.0 30.0 97.0 0.0 0.394737 0 . . none . PIM1 71 . NM_001243186 exon4 c.C658G p.L220V CAAGATCTCTTCG . PASS Atlas-SNP DUOX1 53905 hgsc.bcm.edu 37 15 45439820 45439820 + Nonsense_Mutation SNP C C T rs143543011 TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 98.0 14.0 92.0 0.0 0.142857 0 C|1.000;T|0.000 0.000 weak . DUOX1 125 . NM_017434 exon20 c.C2512T p.R838X TCCTTCCGAGAGT . PASS Atlas-SNP NIPA2 81614 hgsc.bcm.edu 37 15 23006258 23006258 + Missense_Mutation SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 75.0 28.0 78.0 0.0 0.373333 0 . . none . NIPA2 49 . NM_001184889 exon10 c.A1046G p.N349S GAGACATTTTCAC . PASS Atlas-SNP ROPN1L 83853 hgsc.bcm.edu 37 5 10465050 10465050 + Silent SNP A A C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 296.0 132.0 382.0 0.0 0.445946 0 . . none . ROPN1L 33 . NM_031916 exon5 c.A684C p.V228V AGATGTAGGCCAT . PASS Atlas-SNP NISCH 11188 hgsc.bcm.edu 37 3 52521970 52521970 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 25.0 17.0 54.0 0.0 0.68 0 . . none . NISCH 97 . NM_007184 exon16 c.G2462T p.S821I TGTGTAGCCCCAT . PASS Atlas-SNP FOXB2 442425 hgsc.bcm.edu 37 9 79635701 79635701 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 54.0 27.0 37.0 0.0 0.5 0 . . none . FOXB2 71 . NM_001013735 exon1 c.G1131A p.A377A GTCCGCGCTGCAG . PASS Atlas-SNP NCAM2 4685 hgsc.bcm.edu 37 21 22656515 22656515 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 81.0 43.0 109.0 0.0 0.530864 0 . . none . NCAM2 220 . NM_004540 exon3 c.G132A p.A44A TGCAGCGATTGGT . PASS Atlas-SNP PRRT3 285368 hgsc.bcm.edu 37 3 9991706 9991706 + Missense_Mutation SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 72.0 37.0 72.0 0.0 0.513889 0 . . none . PRRT3 35 . NM_207351 exon2 c.A94G p.R32G GTGGCCTGGGAAA . PASS Atlas-SNP PTPN18 26469 hgsc.bcm.edu 37 2 131130741 131130741 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 56.0 23.0 87.0 0.0 0.410714 0 . . none PTPN18,colon,carcinoma,0,1 PTPN18 42 1 NM_014369 exon15 c.C1327T p.R443C AACCTGCGCATTG . PASS Atlas-SNP OR1M1 125963 hgsc.bcm.edu 37 19 9204160 9204160 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 147.0 71.0 160.0 0.0 0.482993 0 . . none . OR1M1 52 . NM_001004456 exon1 c.G240T p.K80N CCCTAAGATGCTG . PASS Atlas-SNP PCDHA11 56138 hgsc.bcm.edu 37 5 140249903 140249903 + Silent SNP G G A rs372041974 TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 140.0 60.0 178.0 0.0 0.428571 0 . . weak . PCDHA11 209 . NM_018902 exon1 c.G1215A p.S405S CTACTCGTTGGTG . PASS Atlas-SNP HIST1H2BJ 8970 hgsc.bcm.edu 37 6 27100220 27100220 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 55.0 28.0 81.0 0.0 0.509091 0 . . none . HIST1H2BJ 21 . NM_021058 exon1 c.C310A p.P104T CCCCAGGCAGCAG . PASS Atlas-SNP ZCCHC8 55596 hgsc.bcm.edu 37 12 122958280 122958280 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 267.0 161.0 159.0 0.0 0.602996 0 . . none . ZCCHC8 56 . NM_017612 exon14 c.G1888A p.V630I TTGGTACGACACT . PASS Atlas-SNP OR5L1 219437 hgsc.bcm.edu 37 11 55579714 55579714 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 90.0 45.0 98.0 0.0 0.5 0 . . none . OR5L1 145 . NM_001004738 exon1 c.A772G p.I258V CTTTCCATTTATT . PASS Atlas-SNP NECAB3 63941 hgsc.bcm.edu 37 20 32246320 32246320 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 69.0 39.0 91.0 0.0 0.565217 0 . . none . NECAB3 27 . NM_031232 exon10 c.C1033A p.L345M CATACAGGGTGAA . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37139128 37139128 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 98.0 48.0 109.0 0.0 0.489796 0 . . none . PIM1 71 . NM_001243186 exon4 c.G741A p.R247R CGTGCGGCACTGC . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022431 32022431 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 76.0 37.0 89.0 0.0 0.486842 0 . . none . OSBPL10 160 . NM_017784 exon1 c.C241T p.L81F TGCTGAGCACGCC . PASS Atlas-SNP OR5M10 390167 hgsc.bcm.edu 37 11 56345145 56345145 + Missense_Mutation SNP G G C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 153.0 63.0 228.0 0.0 0.411765 0 . . none . OR5M10 56 . NM_001004741 exon1 c.C53G p.T18R TCGTCTGTCAGTC . PASS Atlas-SNP FAT4 79633 hgsc.bcm.edu 37 4 126241904 126241904 + Missense_Mutation SNP C C G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 96.0 45.0 155.0 0.0 0.46875 0 . . none . FAT4 1752 . NM_024582 exon1 c.C4338G p.D1446E ACATGACCCTGAT . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022574 32022574 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 70.0 35.0 72.0 0.0 0.5 0 . . none . OSBPL10 160 . NM_017784 exon1 c.G98A p.C33Y AGAGAGCAGGAGG . PASS Atlas-SNP LIMD1 8994 hgsc.bcm.edu 37 3 45636456 45636456 + Missense_Mutation SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 43.0 37.0 95.0 0.0 0.860465 0 . . none . LIMD1 34 . NM_014240 exon1 c.T85C p.F29L GGGCTCTTCCGAG . PASS Atlas-SNP SEL1L2 80343 hgsc.bcm.edu 37 20 13866955 13866955 + Missense_Mutation SNP T T A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 197.0 89.0 233.0 0.0 0.451777 0 . . none . SEL1L2 103 . NM_001271539 exon9 c.A879T p.E293D TCCTCTTTCTGCC . PASS Atlas-SNP CYB5R3 1727 hgsc.bcm.edu 37 22 43024249 43024249 + Silent SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 53.0 13.0 53.0 0.0 0.245283 0 . . none . CYB5R3 31 . NM_001171660 exon5 c.A471G p.G157G CTTCCCTCCAGCG . PASS Atlas-SNP HSPA1L 3305 hgsc.bcm.edu 37 6 31778920 31778920 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 133.0 61.0 110.0 0.0 0.458647 0 . . none . HSPA1L 185 . NM_005527 exon2 c.C830T p.S277L CTGGACGACAGGG . PASS Atlas-SNP ACTG1 71 hgsc.bcm.edu 37 17 79479013 79479013 + Missense_Mutation SNP C C G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 101.0 56.0 85.0 0.0 0.554455 0 . . none . ACTG1 55 . NM_001614 exon3 c.G279C p.E93D GCGCAGCTCGTTG . PASS Atlas-SNP TRIOBP 11078 hgsc.bcm.edu 37 22 38153834 38153834 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 56.0 21.0 51.0 0.0 0.375 0 . . none . TRIOBP 262 . NM_001039141 exon16 c.C5902T p.R1968C CCTGACCGCCTGG . PASS Atlas-SNP MYO5B 4645 hgsc.bcm.edu 37 18 47518736 47518736 + Missense_Mutation SNP A A C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 168.0 39.0 177.0 0.0 0.232143 0 . . none . MYO5B 178 . NM_001080467 exon6 c.T678G p.I226M AAAGCCAATCTGG . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37139097 37139097 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 93.0 44.0 117.0 1.0 0.473118 0.00854701 . . none PIM1,NS,carcinoma,+1,3 PIM1 71 3 NM_001243186 exon4 c.G710A p.S237N CCCGCAGCTTCTT . scavenged Atlas-SNP PPP5C 5536 hgsc.bcm.edu 37 19 46878959 46878959 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 109.0 67.0 91.0 0.0 0.614679 0 . . none PPP5C,NS,carcinoma,0,1 PPP5C 44 1 NM_006247 exon3 c.C462T p.G154G CGCGGGCGACGAG . PASS Atlas-SNP ARHGAP21 57584 hgsc.bcm.edu 37 10 24909679 24909679 + Missense_Mutation SNP T T G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 140.0 56.0 160.0 0.0 0.4 0 . . none . ARHGAP21 185 . NM_020824 exon9 c.A1145C p.Q382P ATGTGCTGATGGG . PASS Atlas-SNP ARHGEF3 50650 hgsc.bcm.edu 37 3 56763546 56763546 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 260.0 122.0 292.0 2.0 0.469231 0.00684932 . . none ARHGEF3_ENST00000413728,NS,carcinoma,0,4 ARHGEF3 128 4 NM_001128615 exon13 c.C1429T p.R477C CTTGACGAATACA . scavenged Atlas-SNP UTRN 7402 hgsc.bcm.edu 37 6 145148756 145148756 + Silent SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 59.0 45.0 146.0 0.0 0.762712 0 . . none . UTRN 327 . NM_007124 exon67 c.A9543G p.Q3181Q CTCACAATCTCCT . PASS Atlas-SNP KRT1 3848 hgsc.bcm.edu 37 12 53069243 53069243 + Missense_Mutation SNP T T C rs77846840 bycluster TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 26.0 12.0 11.0 0.0 0.461538 0 T|0.500;C|0.500 0.500 weak . KRT1 110 . NM_006121 exon9 c.A1669G p.S557G AGCTGCTACCTCC . PASS Atlas-SNP KCNA3 3738 hgsc.bcm.edu 37 1 111216563 111216563 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 56.0 25.0 58.0 0.0 0.446429 0 . . none . KCNA3 91 . NM_002232 exon1 c.G869A p.S290N GAGAAGCTGGAGG . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022619 32022619 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 114.0 60.0 89.0 0.0 0.526316 0 . . none . OSBPL10 160 . NM_017784 exon1 c.G53A p.S18N CTGCGGCTGCTGC . PASS Atlas-SNP POU2F2 5452 hgsc.bcm.edu 37 19 42600043 42600043 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 116.0 28.0 60.0 0.0 0.241379 0 . . none . POU2F2 106 . NM_001207025 exon9 c.C702T p.N234N GAAGTCGTTGCCG . PASS Atlas-SNP SPHKAP 80309 hgsc.bcm.edu 37 2 228882550 228882550 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 131.0 59.0 149.0 1.0 0.450382 0.00671141 . . none SPHKAP_ENST00000392056,NS,carcinoma,0,4 SPHKAP 750 4 NM_030623 exon7 c.C3020T p.T1007M TCGTCCGTCTTCC . scavenged Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138332 37138332 + Missense_Mutation SNP C C G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 38.0 18.0 63.0 0.0 0.473684 0 . . none . PIM1 71 . NM_001243186 exon1 c.C254G p.A85G CCTGCGCCGACAT . PASS Atlas-SNP C10orf71 118461 hgsc.bcm.edu 37 10 50533940 50533940 + Missense_Mutation SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 36.0 13.0 73.0 0.0 0.361111 0 . . none . C10orf71 179 . NM_001135196 exon3 c.T3350C p.L1117P ACGCCCTCGTGTG . PASS Atlas-SNP MUC4 4585 hgsc.bcm.edu 37 3 195512623 195512623 + Missense_Mutation SNP G G C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 242.0 35.0 277.0 0.0 0.144628 0 . . none . MUC4 1505 . NM_018406 exon2 c.C5828G p.S1943C GCTGAGGAAGGGC . PASS Atlas-SNP JAM3 83700 hgsc.bcm.edu 37 11 134019043 134019043 + Silent SNP C C T rs200279211 by1000genomes TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 145.0 66.0 155.0 0.0 0.455172 0 C|1.000;T|0.000 0.000 strong . JAM3 41 . NM_032801 exon9 c.C900T p.G300G GCAGGGCGACTTC . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138591 37138591 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 53.0 23.0 59.0 0.0 0.433962 0 . . none . PIM1 71 . NM_001243186 exon2 c.C398T p.P133L TGGGCCCGCTACT . PASS Atlas-SNP DNAH7 56171 hgsc.bcm.edu 37 2 196852948 196852948 + Silent SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 202.0 79.0 273.0 0.0 0.391089 0 . . none . DNAH7 512 . NM_018897 exon13 c.T1359C p.S453S AGACTTACTTTCC . PASS Atlas-SNP CXorf22 170063 hgsc.bcm.edu 37 X 35969413 35969413 + Silent SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 208.0 189.0 230.0 0.0 0.908654 0 . . none . CXorf22 272 . NM_152632 exon5 c.T822C p.N274N ATACAATAATAGC . PASS Atlas-SNP FAT2 2196 hgsc.bcm.edu 37 5 150922299 150922299 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 98.0 52.0 112.0 0.0 0.530612 0 . . none . FAT2 465 . NM_001447 exon9 c.T8389C p.F2797L CCTCAAATACAGG . PASS Atlas-SNP ENPEP 2028 hgsc.bcm.edu 37 4 111398089 111398089 + Silent SNP G G A rs373421438 alternate_allele TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 58.0 26.0 73.0 0.0 0.448276 0 . . alt . ENPEP 149 . NM_001977 exon1 c.G519A p.A173A CGAGGCGGAGGAA . PASS Atlas-SNP COL12A1 1303 hgsc.bcm.edu 37 6 75890902 75890902 + Missense_Mutation SNP A A C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 100.0 44.0 117.0 0.0 0.44 0 . . none . COL12A1 385 . NM_004370 exon11 c.T1917G p.S639R TGAAAAACTAAGA . PASS Atlas-SNP AMOTL1 154810 hgsc.bcm.edu 37 11 94583365 94583365 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 58.0 37.0 70.0 0.0 0.637931 0 . . none . AMOTL1 95 . NM_130847 exon7 c.G1735A p.E579K CACATCGAGATCC . PASS Atlas-SNP SYNE2 23224 hgsc.bcm.edu 37 14 64593362 64593362 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 98.0 54.0 74.0 0.0 0.55102 0 . . none . SYNE2 577 . NM_182914 exon73 c.A13754G p.K4585R GTGACAAGAAGGG . PASS Atlas-SNP FGF21 26291 hgsc.bcm.edu 37 19 49261218 49261218 + Missense_Mutation SNP G G A rs142980324 bycluster TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 151.0 94.0 96.0 0.0 0.622517 0 G|1.000;A|0.000 0.000 weak . FGF21 21 . NM_019113 exon3 c.G371A p.R124Q GCTTCCGGGAGCT . PASS Atlas-SNP TEKT1 83659 hgsc.bcm.edu 37 17 6719262 6719262 + Missense_Mutation SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 32.0 16.0 69.0 0.0 0.5 0 . . none . TEKT1 49 . NM_053285 exon4 c.G376T p.D126Y CCAGGTCAATGCC . PASS Atlas-SNP ESR2 2100 hgsc.bcm.edu 37 14 64749642 64749642 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 145.0 74.0 145.0 0.0 0.510345 0 . . none . ESR2 82 . NM_001214902 exon1 c.C62T p.S21F AAGATGGATTGAC . PASS Atlas-SNP TAOK2 9344 hgsc.bcm.edu 37 16 29996996 29996996 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 27.0 14.0 43.0 0.0 0.518519 0 . . none TAOK2_ENST00000308893,NS,carcinoma,+2,2 TAOK2 142 2 NM_004783 exon15 c.C1806T p.P602P GAACCCCAGCACT . PASS Atlas-SNP VAT1 10493 hgsc.bcm.edu 37 17 41174312 41174312 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 23.0 15.0 27.0 0.0 0.652174 0 . . none . VAT1 19 . NM_006373 exon1 c.G28A p.A10T TCGCTGCCTCGGC . PASS Atlas-SNP ARHGEF40 55701 hgsc.bcm.edu 37 14 21550212 21550212 + Missense_Mutation SNP G G T rs114591848 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 20.0 16.0 41.0 0.0 0.8 0 G|0.997;A|0.003 . alt . ARHGEF40 84 . NM_018071 exon14 c.G3185T p.R1062L TGGGCCGGGCTAG . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022573 32022573 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 71.0 33.0 71.0 0.0 0.464789 0 . . none . OSBPL10 160 . NM_017784 exon1 c.C99T p.C33C CAGAGAGCAGGAG . PASS Atlas-SNP LILRA2 11027 hgsc.bcm.edu 37 19 55086869 55086869 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 135.0 47.0 123.0 0.0 0.348148 0 . . none . LILRA2 99 . NM_001130917 exon5 c.G802T p.G268C CGCCCTGGTTGGC . PASS Atlas-SNP C17orf104 284071 hgsc.bcm.edu 37 17 42751550 42751550 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 72.0 31.0 75.0 0.0 0.430556 0 . . none . C17orf104 75 . NM_001145080 exon8 c.A2845G p.T949A GGTGAAACAAACA . PASS Atlas-SNP SEMA5A 9037 hgsc.bcm.edu 37 5 9119196 9119196 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 90.0 34.0 100.0 0.0 0.377778 0 . . none . SEMA5A 236 . NM_003966 exon15 c.C1839T p.I613I GAAGCCGATCCCA . PASS Atlas-SNP ZNF700 90592 hgsc.bcm.edu 37 19 12059331 12059331 + Nonsense_Mutation SNP T T G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 128.0 65.0 137.0 0.0 0.507812 0 . . none . ZNF700 81 . NM_001271848 exon4 c.T501G p.Y167X GCCATATAAGTGT . PASS Atlas-SNP BCR 613 hgsc.bcm.edu 37 22 23523331 23523331 + Silent SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 78.0 41.0 73.0 0.0 0.525641 0 . . none . BCR 74 . NM_021574 exon1 c.T184C p.L62L CAGACGTTGCTGG . PASS Atlas-SNP ASB11 140456 hgsc.bcm.edu 37 X 15301725 15301725 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 67.0 65.0 56.0 0.0 0.970149 0 . . none . ASB11 79 . NM_080873 exon7 c.C874T p.R292C ACAGGCGGCAGAG . PASS Atlas-SNP PLCG2 5336 hgsc.bcm.edu 37 16 81819709 81819709 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 59.0 29.0 61.0 0.0 0.491525 0 . . none . PLCG2 276 . NM_002661 exon2 c.G115A p.E39K ACCCCCGAGCGGA . PASS Atlas-SNP BTG2 7832 hgsc.bcm.edu 37 1 203274876 203274876 + Nonsense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 65.0 30.0 70.0 0.0 0.461538 0 . . none . BTG2 16 . NM_006763 exon1 c.G142T p.E48X CTCACAGGTGAGC . PASS Atlas-SNP NELL1 4745 hgsc.bcm.edu 37 11 20948897 20948897 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 65.0 30.0 83.0 0.0 0.461538 0 . . none . NELL1 179 . NM_006157 exon8 c.A803G p.H268R ACTGTCATTGTGA . PASS Atlas-SNP ZNF43 7594 hgsc.bcm.edu 37 19 21991819 21991819 + Missense_Mutation SNP T T G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 74.0 28.0 114.0 0.0 0.378378 0 . . none . ZNF43 152 . NM_001256653 exon4 c.A1047C p.K349N GTAGGGTTTCTCT . PASS Atlas-SNP FANCD2 2177 hgsc.bcm.edu 37 3 10080992 10080992 + Missense_Mutation SNP G G A rs41291203 bycluster;by1000genomes TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 129.0 58.0 193.0 0.0 0.449612 0 G|1.000;A|0.000 0.000 strong . FANCD2 253 . NM_001018115 exon8 c.G521A p.R174Q TACCTCGACTCAT . PASS Atlas-SNP KANK4 163782 hgsc.bcm.edu 37 1 62739545 62739545 + Missense_Mutation SNP C C G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 131.0 56.0 170.0 0.0 0.427481 0 . . none KANK4,right_upper_lobe,carcinoma,+2,1 KANK4 135 1 NM_181712 exon3 c.G1231C p.D411H TCACGTCCGTCTG . PASS Atlas-SNP HNRNPA1 3178 hgsc.bcm.edu 37 12 54676988 54676988 + Nonsense_Mutation SNP G G T rs367836050 alternate_allele TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 101.0 36.0 72.0 0.0 0.356436 0 . . alt . HNRNPA1 72 . NM_031157 exon8 c.G877T p.G293X AACAACGGAGGCG . PASS Atlas-SNP F11 2160 hgsc.bcm.edu 37 4 187194287 187194287 + Missense_Mutation SNP C C T rs367856671 TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 221.0 84.0 334.0 1.0 0.380091 0.00299401 . . weak . F11 65 . NM_000128 exon4 c.C281T p.A94V CAGCAGCGATTTC . PASS Atlas-SNP COL11A1 1301 hgsc.bcm.edu 37 1 103463891 103463891 + Missense_Mutation SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 401.0 166.0 567.0 1.0 0.413965 0.00176367 . . none . COL11A1 972 . NM_080629 exon25 c.G2207T p.G736V GGAAGTCCAGCAA . PASS Atlas-SNP KDM2B 84678 hgsc.bcm.edu 37 12 121881588 121881588 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 14.0 13.0 14.0 0.0 0.928571 0 . . none KDM2B_ENST00000377071,rectum,carcinoma,-1,2 KDM2B 218 2 NM_032590 exon17 c.G2460A p.S820S TTGAAGCGATGAG . PASS Atlas-SNP AMOTL1 154810 hgsc.bcm.edu 37 11 94554798 94554798 + Silent SNP G G A rs370986721 TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 71.0 33.0 58.0 0.0 0.464789 0 . . weak . AMOTL1 95 . NM_130847 exon4 c.G1224A p.P408P CCTGCCGCTTCCA . PASS Atlas-SNP RAB11FIP1 80223 hgsc.bcm.edu 37 8 37732263 37732263 + Silent SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 137.0 60.0 133.0 0.0 0.437956 0 . . none . RAB11FIP1 105 . NM_025151 exon3 c.A1392G p.E464E CATGCCTTCCTTC . PASS Atlas-SNP MAGI2 9863 hgsc.bcm.edu 37 7 79082451 79082451 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 45.0 20.0 81.0 0.0 0.444444 0 . . none MAGI2,caecum,carcinoma,0,1 MAGI2 246 1 NM_012301 exon1 c.G186A p.S62S CTCCTCCGACACC . PASS Atlas-SNP KLHL1 57626 hgsc.bcm.edu 37 13 70370951 70370951 + Silent SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 152.0 69.0 209.0 0.0 0.453947 0 . . none . KLHL1 164 . NM_020866 exon7 c.T1558C p.L520L TGTTCAATGTCTT . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138951 37138951 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 48.0 24.0 53.0 0.0 0.5 0 . . none PIM1,NS,lymphoid_neoplasm,+1,5 PIM1 71 5 NM_001243186 exon4 c.C564T p.S188S GGTGAGCTCGGGT . PASS Atlas-SNP RNF113B 140432 hgsc.bcm.edu 37 13 98829048 98829048 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 59.0 26.0 49.0 0.0 0.440678 0 . . none RNF113B,mouth,carcinoma,0,1 RNF113B 41 1 NM_178861 exon1 c.G443A p.R148Q ATTCCCCGGTAGA . PASS Atlas-SNP OSBPL10 114884 hgsc.bcm.edu 37 3 32022569 32022569 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 72.0 35.0 67.0 0.0 0.486111 0 . . none . OSBPL10 160 . NM_017784 exon1 c.C103T p.L35L CCGCCAGAGAGCA . PASS Atlas-SNP IDO1 3620 hgsc.bcm.edu 37 8 39782769 39782769 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 165.0 66.0 158.0 0.0 0.4 0 . . none . IDO1 43 . NM_002164 exon9 c.C735T p.D245D ATCAGACGGTCTG . PASS Atlas-SNP DGCR8 54487 hgsc.bcm.edu 37 22 20079074 20079074 + Nonsense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 56.0 28.0 69.0 0.0 0.5 0 . . none . DGCR8 53 . NM_001190326 exon6 c.C1423T p.Q475X CGGAAGCAGGCGG . PASS Atlas-SNP BTBD11 121551 hgsc.bcm.edu 37 12 108011111 108011111 + Missense_Mutation SNP G G A rs190270378 bycluster;by1000genomes TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 210.0 121.0 193.0 2.0 0.57619 0.0103627 G|0.999;A|0.001 0.001 strong BTBD11,colon,carcinoma,+1,1 BTBD11 122 1 NM_001018072 exon9 c.G2129A p.R710H TGGAGCGTGGTGC . scavenged Atlas-SNP ANKRD11 29123 hgsc.bcm.edu 37 16 89348402 89348402 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 156.0 58.0 132.0 0.0 0.371795 0 . . none . ANKRD11 195 . NM_001256183 exon9 c.C4548T p.D1516D GGACTTGTCTTTG . PASS Atlas-SNP GATA3 2625 hgsc.bcm.edu 37 10 8100507 8100507 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 42.0 16.0 51.0 0.0 0.380952 0 . . none . GATA3 182 . NM_002051 exon3 c.G481A p.V161I AAGGACGTCTCCC . PASS Atlas-SNP SIRT7 51547 hgsc.bcm.edu 37 17 79872227 79872227 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 67.0 27.0 54.0 0.0 0.402985 0 . . none . SIRT7 37 . NM_016538 exon7 c.G759A p.A253A GGTCGCCGCTTCC . PASS Atlas-SNP PTPRF 5792 hgsc.bcm.edu 37 1 44084821 44084821 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 41.0 21.0 45.0 0.0 0.512195 0 . . none . PTPRF 172 . NM_002840 exon27 c.C4594T p.R1532W CTACGACGGGTCA . PASS Atlas-SNP CILP2 148113 hgsc.bcm.edu 37 19 19656250 19656250 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 40.0 19.0 35.0 0.0 0.475 0 . . none . CILP2 84 . NM_153221 exon8 c.C2896T p.R966C CGCACCCGCGGCC . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138804 37138804 + Missense_Mutation SNP G G C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 68.0 33.0 73.0 0.0 0.485294 0 . . none PIM1,NS,lymphoid_neoplasm,0,4 PIM1 71 4 NM_001243186 exon3 c.G510C p.E170D GGGAGAGCTGGTG . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138563 37138563 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 41.0 19.0 48.0 0.0 0.463415 0 . . none . PIM1 71 . NM_001243186 exon2 c.C370T p.P124S AAGGAGCCCCTGG . PASS Atlas-SNP PRICKLE2 166336 hgsc.bcm.edu 37 3 64085223 64085223 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 53.0 25.0 55.0 0.0 0.471698 0 . . none PRICKLE2,colon,carcinoma,-1,1 PRICKLE2 88 1 NM_198859 exon8 c.G2039A p.R680H AAACGGCGGTTGT . PASS Atlas-SNP KBTBD13 390594 hgsc.bcm.edu 37 15 65370255 65370255 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 90.0 30.0 62.0 0.0 0.333333 0 . . none . KBTBD13 9 . NM_001101362 exon1 c.G1102A p.A368T CACTGCGCCATCG . PASS Atlas-SNP IGLL5 100423062 hgsc.bcm.edu 37 22 23230323 23230323 + Silent SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 97.0 37.0 89.0 0.0 0.381443 0 . . none . IGLL5 26 . NM_001178126 exon1 c.T90C p.G30G GCTGGGTCTGGCC . PASS Atlas-SNP HIST1H2AM 8336 hgsc.bcm.edu 37 6 27860549 27860549 + Missense_Mutation SNP C C G rs191325870 by1000genomes;alternate_allele TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 194.0 92.0 227.0 0.0 0.474227 0 C|1.000;T|0.000 . alt . HIST1H2AM 27 . NM_003514 exon1 c.G379C p.A127P CCTTAGCTTTGTG . PASS Atlas-SNP EIF2S2 8894 hgsc.bcm.edu 37 20 32677684 32677684 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 78.0 33.0 107.0 0.0 0.423077 0 . . none EIF2S2,NS,carcinoma,-1,3 EIF2S2 32 3 NM_003908 exon9 c.G854A p.R285Q GGTGATCGGCATG . PASS Atlas-SNP TOM1L1 10040 hgsc.bcm.edu 37 17 53007452 53007452 + Silent SNP C C A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 103.0 41.0 103.0 1.0 0.398058 0.00970874 . . none TOM1L1,caecum,carcinoma,-1,1 TOM1L1 33 1 NM_005486 exon8 c.C739A p.R247R ACAGGTCGGGAGA . scavenged Atlas-SNP FOXS1 2307 hgsc.bcm.edu 37 20 30433068 30433068 + Missense_Mutation SNP G G A rs140637242 TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 44.0 18.0 47.0 0.0 0.409091 0 G|1.000;A|0.000 0.000 weak . FOXS1 29 . NM_004118 exon1 c.C278T p.T93M TCCAGCGTCCAGT . PASS Atlas-SNP CYLC1 1538 hgsc.bcm.edu 37 X 83127996 83127996 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 157.0 143.0 214.0 0.0 0.910828 0 . . none . CYLC1 272 . NM_021118 exon4 c.G280T p.A94S ACAGCTGCCAGGG . PASS Atlas-SNP MMP16 4325 hgsc.bcm.edu 37 8 89128762 89128762 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 139.0 65.0 216.0 0.0 0.467626 0 . . none MMP16,NS,carcinoma,+1,1 MMP16 176 1 NM_005941 exon6 c.C1057A p.L353I GACGAAGAATAGC . PASS Atlas-SNP NUP153 9972 hgsc.bcm.edu 37 6 17629629 17629629 + Missense_Mutation SNP A A C rs141169660 bycluster;by1000genomes;alternate_allele TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 125.0 55.0 145.0 0.0 0.44 0 A|0.999;G|0.001 . alt . NUP153 116 . NM_005124 exon18 c.T2801G p.I934R ACACCTATTTTGA . PASS Atlas-SNP FAM198B 51313 hgsc.bcm.edu 37 4 159092159 159092159 + Silent SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 63.0 23.0 62.0 0.0 0.365079 0 . . none . FAM198B 134 . NM_016613 exon2 c.C369A p.G123G CACGGTGCCACGG . PASS Atlas-SNP CDKN2A 1029 hgsc.bcm.edu 37 9 21994305 21994305 + Missense_Mutation SNP A A G novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 24.0 21.0 53.0 0.0 0.875 0 . . none . CDKN2A 4810 . NM_058195 exon1 c.T26C p.L9P ATCCGGAGGGTCA . PASS Atlas-SNP LEUTX 342900 hgsc.bcm.edu 37 19 40276412 40276412 + Silent SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 133.0 50.0 95.0 0.0 0.37594 0 . . none . LEUTX 7 . NM_001143832 exon3 c.G144T p.G48G ACTAGGGCCAGCA . PASS Atlas-SNP HELZ2 85441 hgsc.bcm.edu 37 20 62195768 62195768 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 21.0 12.0 26.0 0.0 0.571429 0 . . none . . . . NM_001037335 exon9 c.G4407A p.P1469P GGCACCCGGGTGC . PASS Atlas-SNP PIM2 11040 hgsc.bcm.edu 37 X 48775918 48775918 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 75.0 65.0 83.0 0.0 0.866667 0 . . none . PIM2 31 . NM_006875 exon2 c.C66T p.G22G ATCCTTGCCTCCT . PASS Atlas-SNP SCN2A 6326 hgsc.bcm.edu 37 2 166201313 166201313 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 263.0 134.0 341.0 1.0 0.509506 0.00293255 . . none . SCN2A 589 . NM_001040143 exon15 c.C2811T p.R937R GTTCCGCGTGCTG . PASS Atlas-SNP TMEM52B 120939 hgsc.bcm.edu 37 12 10339160 10339160 + Silent SNP C C T rs145013082 bycluster;byfrequency TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 67.0 26.0 84.0 0.0 0.38806 0 C|1.000;T|0.000 0.000 strong . . . . NM_153022 exon3 c.C219T p.H73H CGATCACGACAGC . PASS Atlas-SNP MYD88 4615 hgsc.bcm.edu 37 3 38182641 38182641 + Missense_Mutation SNP T T C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 55.0 27.0 65.0 0.0 0.490909 0 . . none MYD88,NS,lymphoid_neoplasm,0,828 MYD88 900 828 NM_001172569 exon4 c.T613C p.X205R AGCGACTGATCCC . PASS Atlas-SNP BCR 613 hgsc.bcm.edu 37 22 23523318 23523318 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 78.0 32.0 71.0 0.0 0.410256 0 . . none . BCR 74 . NM_021574 exon1 c.C171T p.I57I CATGATCTACCTG . PASS Atlas-SNP FZD7 8324 hgsc.bcm.edu 37 2 202899479 202899479 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 56.0 28.0 46.0 0.0 0.5 0 . . none . FZD7 70 . NM_003507 exon1 c.G109A p.G37R TACCACGGAGAGA . PASS Atlas-SNP PIK3AP1 118788 hgsc.bcm.edu 37 10 98405403 98405403 + Missense_Mutation SNP A A C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 125.0 44.0 118.0 0.0 0.352 0 . . none . PIK3AP1 111 . NM_152309 exon8 c.T1202G p.L401R CTCTTGAGCATGT . PASS Atlas-SNP HDAC8 55869 hgsc.bcm.edu 37 X 71571612 71571612 + Missense_Mutation SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 71.0 61.0 76.0 0.0 0.859155 0 . . none . HDAC8 18 . NM_018486 exon10 c.G1082A p.R361Q TGGATTCGGTGGG . PASS Atlas-SNP RNF180 285671 hgsc.bcm.edu 37 5 63626166 63626166 + Silent SNP C C T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 258.0 105.0 327.0 0.0 0.406977 0 . . none . RNF180 94 . NM_001113561 exon7 c.C1512T p.S504S ACAAAGCTTTCAG . PASS Atlas-SNP FOXA3 3171 hgsc.bcm.edu 37 19 46375993 46375993 + Missense_Mutation SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 36.0 23.0 25.0 0.0 0.638889 0 . . none . FOXA3 19 . NM_004497 exon2 c.G730A p.A244T ACCCCCGCGGCCA . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37138577 37138577 + Missense_Mutation SNP G G T novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 41.0 18.0 52.0 0.0 0.439024 0 . . none PIM1,NS,lymphoid_neoplasm,0,2 PIM1 71 2 NM_001243186 exon2 c.G384T p.Q128H GTCGCAGTACCAG . PASS Atlas-SNP PIM1 5292 hgsc.bcm.edu 37 6 37139209 37139209 + Missense_Mutation SNP G G C novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 64.0 26.0 70.0 0.0 0.40625 0 . . none . PIM1 71 . NM_001243186 exon4 c.G822C p.K274N GCTCAAGCTCATC . PASS Atlas-SNP APOL2 23780 hgsc.bcm.edu 37 22 36623579 36623579 + Silent SNP T T A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 163.0 79.0 140.0 0.0 0.484663 0 . . none . APOL2 20 . NM_030882 exon5 c.A885T p.S295S GTGCTTTGACTCA . PASS Atlas-SNP ZNF814 730051 hgsc.bcm.edu 37 19 58385790 58385790 + Missense_Mutation SNP G G T rs111727691 bycluster TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 363.0 57.0 238.0 0.0 0.157025 0 G|0.500;T|0.500 0.500 weak . ZNF814 93 . NM_001144989 exon3 c.C968A p.P323H TCATAAGGTCTTT . PASS Atlas-SNP HIST1H2BD 3017 hgsc.bcm.edu 37 6 26158724 26158724 + Silent SNP G G A novel TCGA-GS-A9TT-01A-11D-A382-10 TCGA-GS-A9TT-10A-01D-A385-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e6b849d0-569e-4f4a-aba6-25227d709267 ddddacd6-a277-4d16-bc20-4201b0fe2008 110.0 48.0 127.0 0.0 0.436364 0 . . none . HIST1H2BD 45 . NM_021063 exon1 c.G327A p.K109K GGCCAAGCACGCC . PASS Atlas-SNP