Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
SFPQ	6421	hgsc.bcm.edu	37	1	35658418	35658432	+	In_Frame_Del	DEL	GGTGGCTGCTGCGGT	GGTGGCTGCTGCGGT	-	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	GGTGGCTGCTGCGGT	GGTGGCTGCTGCGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	29.0	13.0	27.0	0.0	0.448276	0	.	.	none	.	SFPQ	51	.	NM_005066	exon1	c.220_234del	p.74_78del	.	.	PASS	Atlas-Indel
B2M	567	hgsc.bcm.edu	37	15	45007689	45007690	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	76.0	35.0	94.0	0.0	0.461	.	.	.	none	B2M,NS,lymphoid_neoplasm,+2,1	B2M	99	1	NM_004048	exon2	c.135_136del	p.45_46del	.	.	PASS	Pindel,Atlas-Indel
CIITA	4261	hgsc.bcm.edu	37	16	11001270	11001271	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	97.0	19.0	71.0	0.0	0.195876	0	.	.	none	.	CIITA	92	.	NM_000246	exon11	c.1920_1921del	p.640_641del	.	.	PASS	Atlas-Indel
KIAA0947	23379	hgsc.bcm.edu	37	5	5461621	5461621	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	158.0	30.0	173.0	0.0	0.190	.	.	.	none	KIAA0947_ENST00000296564,NS,carcinoma,-1,2	KIAA0947	301	2	NM_015325	exon13	c.2173delT	p.Y725fs	.	.	PASS	Pindel,Atlas-Indel
PRDM1	639	hgsc.bcm.edu	37	6	106552891	106552892	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	78.0	19.0	152.0	0.0	0.244	.	.	.	none	PRDM1,colon,carcinoma,0,1	PRDM1	195	1	NM_001198	exon5	c.856_857insGT	p.R286fs	.	.	PASS	Pindel,Atlas-Indel
DAAM1	23002	hgsc.bcm.edu	37	14	59797397	59797397	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	166.0	53.0	194.0	0.0	0.319277	0	.	.	none	.	DAAM1	95	.	NM_001270520	exon13	c.G1551A	p.E517E	CCATGAGCTCAGC	.	PASS	Atlas-SNP
KCTD10	83892	hgsc.bcm.edu	37	12	109889615	109889615	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	71.0	24.0	47.0	0.0	0.338028	0	.	.	none	KCTD10,NS,carcinoma,0,1	KCTD10	24	1	NM_031954	exon7	c.G727C	p.E243Q	GAAACTCCACCTG	.	PASS	Atlas-SNP
MARCH10	162333	hgsc.bcm.edu	37	17	60821880	60821880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	52.0	14.0	65.0	0.0	0.269231	0	.	.	none	.	MARCH10	102	.	NM_001100875	exon5	c.C392A	p.A131E	ATTGGTGCTTGGT	.	PASS	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	37	22	45937241	45937241	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	83.0	28.0	76.0	0.0	0.337349	0	.	.	none	.	FBLN1	143	.	NM_006487	exon9	c.C1055T	p.T352M	AGGGAACGCGCTG	.	PASS	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	37	1	27102083	27102083	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	43.0	17.0	44.0	0.0	0.395349	0	.	.	none	ARID1A,bladder,carcinoma,0,1	ARID1A	842	1	NM_006015	exon19	c.G5009A	p.W1670X	AGGCATGGCGGGT	.	PASS	Atlas-SNP
ANP32C	23520	hgsc.bcm.edu	37	4	165118819	165118819	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	102.0	34.0	95.0	0.0	0.333333	0	.	.	none	ANP32C,NS,carcinoma,0,1	ANP32C	59	1	NM_012403	exon1	c.G45A	p.A15A	AGAGGGCGCCCTG	.	PASS	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	37	19	56249530	56249530	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	166.0	46.0	130.0	0.0	0.277108	0	.	.	none	.	NLRP9	163	.	NM_176820	exon1	c.G211T	p.V71L	GTGTTACCTCCCA	.	PASS	Atlas-SNP
SATB2	23314	hgsc.bcm.edu	37	2	200173610	200173610	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	119.0	47.0	140.0	0.0	0.394958	0	.	.	none	.	SATB2	134	.	NM_015265	exon11	c.T1613C	p.L538P	GTACAGAGGTTTT	.	PASS	Atlas-SNP
CBX3	11335	hgsc.bcm.edu	37	7	26245986	26245986	+	Splice_Site	SNP	A	A	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	89.0	6.0	76.0	1.0	0.0674157	0.0131579	.	.	none	CBX3,colon,adenoma,0,1	CBX3	25	1	NM_007276	exon3	c.25-2A>T	.	TATTTTAGCAAAA	.	scavenged	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950708	79950708	+	Silent	SNP	T	T	C	rs2405875	bycluster;by1000genomes	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	29.0	22.0	11.0	0.0	0.758621	0	T|0.781;C|0.219	0.219	strong	.	MSH3	129	.	NM_002439	exon1	c.T162C	p.A54A	AGCGGCTGCAGCG	.	PASS	Atlas-SNP
TNRC6C	57690	hgsc.bcm.edu	37	17	76063864	76063864	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	81.0	4.0	91.0	0.0	0.0493827	0	.	.	none	.	TNRC6C	173	.	NM_018996	exon6	c.G2638A	p.G880S	GGCTGGGGCAGTG	.	PASS	Atlas-SNP
RAB3IL1	5866	hgsc.bcm.edu	37	11	61675610	61675610	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	46.0	11.0	42.0	0.0	0.23913	0	.	.	none	.	RAB3IL1	39	.	NM_001271686	exon2	c.C321T	p.D107D	CAACACGTCCAGC	.	PASS	Atlas-SNP
ZNF100	163227	hgsc.bcm.edu	37	19	21948514	21948514	+	Silent	SNP	C	C	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	73.0	15.0	78.0	0.0	0.205479	0	.	.	none	.	ZNF100	62	.	NM_173531	exon2	c.G78T	p.V26V	AGACTGCACCAGA	.	PASS	Atlas-SNP
CADPS	8618	hgsc.bcm.edu	37	3	62647994	62647994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	36.0	18.0	31.0	0.0	0.5	0	.	.	none	.	CADPS	387	.	NM_003716	exon4	c.G964T	p.A322S	CCCTGGCTATTTG	.	PASS	Atlas-SNP
KLHL6	89857	hgsc.bcm.edu	37	3	183209942	183209942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	151.0	52.0	140.0	0.0	0.344371	0	.	.	none	.	KLHL6	100	.	NM_130446	exon7	c.G1639A	p.E547K	CCCGCTCGTGGCT	.	PASS	Atlas-SNP
DLGAP1	9229	hgsc.bcm.edu	37	18	3814275	3814275	+	Splice_Site	SNP	T	T	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	95.0	23.0	90.0	0.0	0.242105	0	.	.	none	.	DLGAP1	201	.	NM_004746	exon6	c.958-2A>T	.	GGAACCTATTCAG	.	PASS	Atlas-SNP
EXOC7	23265	hgsc.bcm.edu	37	17	74080183	74080183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	73.0	25.0	70.0	0.0	0.342466	0	.	.	none	.	EXOC7	47	.	NM_001145297	exon19	c.A2009G	p.Q670R	GCCTTCTGGATTT	.	PASS	Atlas-SNP
ANKS1A	23294	hgsc.bcm.edu	37	6	34857324	34857324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	8.0	4.0	4.0	0.0	0.5	0	.	.	none	ANKS1A,NS,carcinoma,0,1	ANKS1A	123	1	NM_015245	exon1	c.G145A	p.G49S	AGCGGCGGCGGCG	.	PASS	Atlas-SNP
ZNF423	23090	hgsc.bcm.edu	37	16	49672444	49672444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	64.0	21.0	53.0	0.0	0.328125	0	.	.	none	ZNF423_ENST00000262383,NS,carcinoma,0,1	ZNF423	463	1	NM_015069	exon4	c.G619A	p.D207N	GGTGGTCGCTGCG	.	PASS	Atlas-SNP
PPP1R7	5510	hgsc.bcm.edu	37	2	242097275	242097275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	98.0	36.0	102.0	0.0	0.367347	0	.	.	none	.	PPP1R7	35	.	NM_002712	exon3	c.G235A	p.E79K	GATGCAGAGGTAA	.	PASS	Atlas-SNP
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112	bycluster;by1000genomes	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	27.0	15.0	9.0	0.0	0.555556	0	G|0.835;C|0.165	0.165	strong	MSH3_ENST00000265081,NS,carcinoma,0,1	MSH3	129	1	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	PASS	Atlas-SNP
SGTA	6449	hgsc.bcm.edu	37	19	2767594	2767594	+	Missense_Mutation	SNP	G	G	T	rs367983019	alternate_allele	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	82.0	4.0	99.0	0.0	0.0487805	0	.	.	alt	.	SGTA	19	.	NM_003021	exon3	c.C191A	p.A64E	GCAGCCGCTTCAA	.	PASS	Atlas-SNP
CD3D	915	hgsc.bcm.edu	37	11	118211113	118211113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	102.0	25.0	108.0	0.0	0.245098	0	.	.	none	.	CD3D	21	.	NM_000732	exon2	c.C251T	p.S84F	ACGGTAGATTCTT	.	PASS	Atlas-SNP
OR6M1	390261	hgsc.bcm.edu	37	11	123676690	123676690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	97.0	36.0	71.0	0.0	0.371134	0	.	.	none	.	OR6M1	60	.	NM_001005325	exon1	c.C368A	p.A123D	CAGATAGCCATGT	.	PASS	Atlas-SNP
C3orf35	339883	hgsc.bcm.edu	37	3	37476379	37476379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	248.0	88.0	265.0	0.0	0.354839	0	.	.	none	.	C3orf35	21	.	NM_178339	exon6	c.C271T	p.P91S	TCAATCCCAGCTG	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179604859	179604859	+	Missense_Mutation	SNP	C	C	A	rs367656813		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	109.0	29.0	107.0	0.0	0.266055	0	.	.	weak	.	TTN	18412	.	NM_001267550	exon48	c.G13101T	p.K4367N	CACTTTCTTTATT	.	PASS	Atlas-SNP
PRAMEF11	440560	hgsc.bcm.edu	37	1	12887686	12887686	+	Silent	SNP	T	T	C	rs59802947	bycluster;byfrequency	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	16.0	4.0	9.0	0.0	0.25	0	T|0.986;C|0.014	0.014	strong	PRAMEF11,NS,carcinoma,0,1	PRAMEF11	72	1	NM_001146344	exon3	c.A171G	p.R57R	TTTCCATCTCCTG	.	scavenged	Atlas-SNP
KIAA0196	9897	hgsc.bcm.edu	37	8	126069044	126069044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	73.0	23.0	70.0	0.0	0.315068	0	.	.	none	KIAA0196,NS,malignant_melanoma,0,1	KIAA0196	90	1	NM_014846	exon16	c.C1891T	p.P631S	TTTCTGGGATGAT	.	PASS	Atlas-SNP
RIMS2	9699	hgsc.bcm.edu	37	8	104831794	104831794	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	84.0	22.0	114.0	1.0	0.261905	0.00877193	.	.	none	RIMS2_ENST00000507740,colon,carcinoma,+1,1	RIMS2	1357	1	NM_014677	exon1	c.T59G	p.V20G	ATGGGGTTTTTTC	.	scavenged	Atlas-SNP
PRKG2	5593	hgsc.bcm.edu	37	4	82031675	82031675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	98.0	4.0	119.0	0.0	0.0408163	0	.	.	none	.	PRKG2	195	.	NM_006259	exon14	c.C1867A	p.L623I	TGTTGAGAATGAC	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	37	1	216420482	216420482	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	154.0	33.0	143.0	0.0	0.214286	0	.	.	none	.	USH2A	1168	.	NM_007123	exon13	c.C2254A	p.H752N	AGCCATGGAGGTT	.	PASS	Atlas-SNP
PTGFRN	5738	hgsc.bcm.edu	37	1	117491909	117491909	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	58.0	18.0	66.0	0.0	0.310345	0	.	.	none	.	PTGFRN	91	.	NM_020440	exon4	c.C928T	p.R310W	GACGTCCGGCCCG	.	PASS	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	37	20	58587641	58587641	+	Silent	SNP	C	C	T	rs375717739		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	78.0	24.0	84.0	0.0	0.307692	0	.	.	weak	.	CDH26	229	.	NM_177980	exon18	c.C2355T	p.S785S	CTACAGCGAGGAA	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195511131	195511131	+	Silent	SNP	C	C	T	rs71321826	bycluster	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	89.0	7.0	59.0	0.0	0.0786517	0	C|0.500;T|0.500	0.500	weak	.	MUC4	1505	.	NM_018406	exon2	c.G7320A	p.S2440S	GGATGCCGAGGAA	.	PASS	Atlas-SNP
DYNC1LI2	1783	hgsc.bcm.edu	37	16	66783159	66783159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	88.0	4.0	100.0	0.0	0.0454545	0	.	.	none	.	DYNC1LI2	37	.	NM_006141	exon3	c.G239A	p.G80D	TTTTTGCCATGCT	.	PASS	Atlas-SNP
VN1R2	317701	hgsc.bcm.edu	37	19	53761881	53761881	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	114.0	35.0	109.0	0.0	0.307018	0	.	.	none	.	VN1R2	71	.	NM_173856	exon1	c.A253C	p.T85P	AAACCCACCAAAC	.	PASS	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	37	16	3789597	3789597	+	Missense_Mutation	SNP	C	C	A	rs200616542	alternate_allele	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	76.0	45.0	74.0	1.0	0.592105	0.0135135	.	.	alt	CREBBP,NS,lymphoid_neoplasm,0,1	CREBBP	546	1	NM_004380	exon25	c.G4262T	p.C1421F	GGGGGGCAATCAG	.	scavenged	Atlas-SNP
BHLHB9	80823	hgsc.bcm.edu	37	X	102004884	102004884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	154.0	38.0	179.0	0.0	0.246753	0	.	.	none	.	BHLHB9	60	.	NM_001142530	exon2	c.G961T	p.D321Y	TATATGGATTCTG	.	PASS	Atlas-SNP
ADAM23	8745	hgsc.bcm.edu	37	2	207425911	207425911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	139.0	6.0	199.0	0.0	0.0431655	0	.	.	none	ADAM23_ENST00000374416,NS,carcinoma,0,2	ADAM23	239	2	NM_003812	exon12	c.G1229A	p.R410H	GTTCTCGCACAAG	.	PASS	Atlas-SNP
CCDC132	55610	hgsc.bcm.edu	37	7	92887682	92887682	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	281.0	61.0	255.0	0.0	0.217082	0	.	.	none	.	CCDC132	136	.	NM_024553	exon8	c.T554C	p.V185A	CAGATGTACGGTT	.	PASS	Atlas-SNP
ARHGEF2	9181	hgsc.bcm.edu	37	1	155920171	155920171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	72.0	16.0	65.0	0.0	0.222222	0	.	.	none	.	ARHGEF2	81	.	NM_001162383	exon21	c.C2806T	p.R936W	GCAGCCGCTCTTC	.	PASS	Atlas-SNP
LAMA3	3909	hgsc.bcm.edu	37	18	21394444	21394444	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	139.0	52.0	152.0	0.0	0.374101	0	.	.	none	.	LAMA3	397	.	NM_001127717	exon15	c.A1866C	p.K622N	GGACAAAGAAAAC	.	PASS	Atlas-SNP
ARMC5	79798	hgsc.bcm.edu	37	16	31473872	31473872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	26.0	10.0	17.0	0.0	0.384615	0	.	.	none	ARMC5_ENST00000457010,NS,carcinoma,+1,2	ARMC5	94	2	NM_024742	exon3	c.G1004A	p.R335Q	AGCGCCGGGATCC	.	PASS	Atlas-SNP
CLASP2	23122	hgsc.bcm.edu	37	3	33552202	33552202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	160.0	49.0	191.0	0.0	0.30625	0	.	.	none	.	CLASP2	138	.	NM_015097	exon37	c.G4192A	p.E1398K	ACTGCTCTGGACT	.	PASS	Atlas-SNP
GATA3	2625	hgsc.bcm.edu	37	10	8100789	8100789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	13.0	4.0	13.0	0.0	0.307692	0	.	.	none	.	GATA3	182	.	NM_002051	exon3	c.G763A	p.A255T	CCCAAGGCCCGGT	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093424	1093424	+	Missense_Mutation	SNP	C	C	G	rs111642532		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	64.0	3.0	67.0	1.0	0.046875	0.0149254	C|0.500;G|0.500	0.500	weak	MUC2_ENST00000441003,NS,carcinoma,0,2	MUC2	614	2	NM_002457	exon30	c.C5243G	p.T1748S	CCATCACCACCAC	.	scavenged	Atlas-SNP
SLITRK2	84631	hgsc.bcm.edu	37	X	144905286	144905286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	120.0	37.0	133.0	0.0	0.308333	0	.	.	none	.	SLITRK2	221	.	NM_001144005	exon5	c.G1343A	p.S448N	TGCAGAGCTTGCA	.	PASS	Atlas-SNP
AZI1	22994	hgsc.bcm.edu	37	17	79173545	79173545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	45.0	4.0	25.0	0.0	0.0888889	0	.	.	none	.	AZI1	145	.	NM_014984	exon9	c.C997A	p.R333S	CTTGGCGTGCCTT	.	PASS	Atlas-SNP
ITGA5	3678	hgsc.bcm.edu	37	12	54795600	54795600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	106.0	42.0	94.0	0.0	0.396226	0	.	.	none	.	ITGA5	99	.	NM_002205	exon22	c.G2266A	p.D756N	TAGTGTCCCGGAG	.	PASS	Atlas-SNP
OR7A10	390892	hgsc.bcm.edu	37	19	14951929	14951929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	92.0	30.0	112.0	0.0	0.326087	0	.	.	none	OR7A10,NS,carcinoma,-1,1	OR7A10	33	1	NM_001005190	exon1	c.C761A	p.T254K	AAGCATGTACCAT	.	PASS	Atlas-SNP
SEMA5A	9037	hgsc.bcm.edu	37	5	9052036	9052036	+	Missense_Mutation	SNP	C	C	T	rs139882587	bycluster;byfrequency	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	137.0	44.0	163.0	0.0	0.321168	0	C|1.000;T|0.000	0.000	strong	SEMA5A,colon,carcinoma,+2,1	SEMA5A	236	1	NM_003966	exon20	c.G2794A	p.G932R	TGTTCCCGGAGCA	.	PASS	Atlas-SNP
MAN1B1	11253	hgsc.bcm.edu	37	9	139981546	139981546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	48.0	12.0	43.0	0.0	0.25	0	.	.	none	.	MAN1B1	40	.	NM_016219	exon1	c.C95T	p.A32V	CCGTCGCCACCAC	.	PASS	Atlas-SNP
HS3ST2	9956	hgsc.bcm.edu	37	16	22826243	22826243	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	66.0	21.0	47.0	0.0	0.318182	0	.	.	none	.	HS3ST2	59	.	NM_006043	exon1	c.C312T	p.S104S	CCACTCCGGCTCA	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274172	39274172	+	Silent	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	64.0	3.0	68.0	1.0	0.046875	0.0147059	.	.	none	KRTAP4-11,NS,carcinoma,-2,2	KRTAP4-11	94	2	NM_033059	exon1	c.C396A	p.P132P	GCAGGTGGGCTGG	.	scavenged	Atlas-SNP
FBXO18	84893	hgsc.bcm.edu	37	10	5960434	5960434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	64.0	4.0	41.0	0.0	0.0625	0	.	.	none	.	FBXO18	108	.	NM_032807	exon14	c.T2246C	p.L749P	TCTATCTCACGCA	.	PASS	Atlas-SNP
ANKRD11	29123	hgsc.bcm.edu	37	16	89352567	89352567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	53.0	19.0	38.0	0.0	0.358491	0	.	.	none	.	ANKRD11	195	.	NM_001256183	exon8	c.G772A	p.G258R	GGTTCCCTCCGTA	.	PASS	Atlas-SNP
TYR	7299	hgsc.bcm.edu	37	11	88911368	88911368	+	Missense_Mutation	SNP	G	G	A	rs149684917		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	64.0	24.0	63.0	0.0	0.375	0	G|1.000;A|0.000	0.000	weak	.	TYR	130	.	NM_000372	exon1	c.G247A	p.V83I	CCTTCCGTCTTTT	.	PASS	Atlas-SNP
PYGB	5834	hgsc.bcm.edu	37	20	25264786	25264786	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	87.0	25.0	114.0	0.0	0.287356	0	.	.	none	.	PYGB	84	.	NM_002862	exon14	c.T1667C	p.V556A	ACAAGGTGAAGAT	.	PASS	Atlas-SNP
MYO18A	399687	hgsc.bcm.edu	37	17	27448927	27448927	+	Missense_Mutation	SNP	C	C	T	rs201811476	bycluster;by1000genomes	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	49.0	17.0	58.0	0.0	0.346939	0	C|0.999;T|0.001	0.001	strong	.	MYO18A	217	.	NM_078471	exon4	c.G1136A	p.R379H	TTCACACGCACCT	.	PASS	Atlas-SNP
IKBKB	3551	hgsc.bcm.edu	37	8	42176069	42176069	+	Splice_Site	SNP	G	G	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	132.0	39.0	95.0	0.0	0.295455	0	.	.	none	.	IKBKB	88	.	NM_001242778	exon12	c.1064-1G>T	.	TCTCCAGTTCAAG	.	PASS	Atlas-SNP
SMARCA2	6595	hgsc.bcm.edu	37	9	2039776	2039776	+	Silent	SNP	A	A	G	rs13296987	byfrequency	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	86.0	7.0	87.0	0.0	0.0813954	0	A|0.750;G|0.250	0.250	strong	SMARCA2_ENST00000349721,NS,carcinoma,0,2	SMARCA2	313	2	NM_139045	exon4	c.A666G	p.Q222Q	GCAGCAACAGCAG	.	PASS	Atlas-SNP
PTPRS	5802	hgsc.bcm.edu	37	19	5222916	5222916	+	Missense_Mutation	SNP	C	C	T	rs62113240		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	19.0	9.0	8.0	0.0	0.473684	0	.	.	weak	.	PTPRS	169	.	NM_002850	exon18	c.G2887A	p.V963I	ATTTGACGATGGC	.	PASS	Atlas-SNP
BCL10	8915	hgsc.bcm.edu	37	1	85736460	85736460	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	154.0	71.0	106.0	0.0	0.461039	0	.	.	none	.	BCL10	39	.	NM_003921	exon2	c.A187C	p.K63Q	CCCTTTTTCTACT	.	PASS	Atlas-SNP
KIF13A	63971	hgsc.bcm.edu	37	6	17764996	17764996	+	Missense_Mutation	SNP	C	C	T	rs184686655	bycluster;by1000genomes	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	86.0	28.0	97.0	0.0	0.325581	0	C|1.000;T|0.000	0.000	strong	.	KIF13A	276	.	NM_022113	exon39	c.G4763A	p.R1588H	GGGCTACGGGACA	.	PASS	Atlas-SNP
PRG4	10216	hgsc.bcm.edu	37	1	186276961	186276961	+	Missense_Mutation	SNP	A	A	C	rs145338869	bycluster;byfrequency	TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	113.0	6.0	67.0	0.0	0.0530973	0	A|0.996;C|0.004	0.004	strong	PRG4,NS,malignant_melanoma,0,1	PRG4	259	1	NM_005807	exon7	c.A2110C	p.T704P	AAGGAGACTGCTC	.	PASS	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	37	12	122247634	122247634	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	55.0	17.0	44.0	0.0	0.309091	0	.	.	none	.	SETD1B	105	.	NM_015048	exon5	c.C783T	p.C261C	CAGCTGCCGCCTG	.	PASS	Atlas-SNP
FAM162B	221303	hgsc.bcm.edu	37	6	117086652	117086652	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	13.0	7.0	23.0	0.0	0.538462	0	.	.	none	.	FAM162B	19	.	NM_001085480	exon1	c.C88T	p.R30W	CGGGCCGTCGCGT	.	PASS	Atlas-SNP
PCDHGA1	56114	hgsc.bcm.edu	37	5	140711241	140711241	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	183.0	26.0	162.0	0.0	0.142077	0	.	.	none	.	PCDHGA1	397	.	NM_018912	exon1	c.A990C	p.K330N	GGCTAAAGTTAAG	.	PASS	Atlas-SNP
NLRP5	126206	hgsc.bcm.edu	37	19	56552307	56552307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D9-01B-11D-A31X-10	TCGA-GR-A4D9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2628dbf8-af39-40c7-8cac-dc5f1d900038	a894d227-2be0-4820-b8b2-0e673e33fb95	58.0	6.0	62.0	0.0	0.103448	0	.	.	none	.	NLRP5	217	.	NM_153447	exon11	c.A2806C	p.T936P	GGCATCACAGCCA	.	PASS	Atlas-SNP