Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
SMCHD1	23347	hgsc.bcm.edu	37	18	2732488	2732491	+	Frame_Shift_Del	DEL	AAAG	AAAG	-	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	144.0	16.0	84.0	0.0	0.111111	0	.	.	none	.	SMCHD1	88	.	NM_015295	exon25	c.3273_3276del	p.1091_1092del	.	.	PASS	Atlas-Indel
EPS8L2	64787	hgsc.bcm.edu	37	11	726654	726655	+	Frame_Shift_Ins	INS	-	-	GCTC	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	106.0	18.0	103.0	0.0	0.170	.	.	.	none	.	EPS8L2	42	.	NM_022772	exon20	c.1970_1971insGCTC	p.Q657fs	.	.	PASS	Pindel,Atlas-Indel
IGLL5	100423062	hgsc.bcm.edu	37	22	23235883	23235884	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	26.0	12.0	48.0	0.0	0.461538	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon2	c.209_210del	p.70_70del	.	.	PASS	Atlas-Indel
PIM1	5292	hgsc.bcm.edu	37	6	37139046	37139047	+	In_Frame_Ins	INS	-	-	CTTCGA	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	123.0	14.0	110.0	0.0	0.113821	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.659_660insCTTCGA	p.L220delinsLFD	.	.	PASS	Atlas-Indel
MEF2BNB-MEF2B	4207	hgsc.bcm.edu	37	19	19261528	19261529	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	180.0	37.0	154.0	0.0	0.206	.	.	.	none	.	MEF2BNB-MEF2B	29	.	NM_005919	exon4	c.17_18insA	p.I6fs	.	.	PASS	Pindel,Atlas-Indel
CD79B	974	hgsc.bcm.edu	37	17	62007630	62007635	+	In_Frame_Del	DEL	CCAGAG	CCAGAG	-	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	CCAGAG	CCAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	67.0	11.0	104.0	0.0	0.164	.	.	.	none	.	CD79B	38	.	NM_001039933	exon3	c.233_238del	p.78_80del	.	.	PASS	Pindel,Atlas-Indel
CD58	965	hgsc.bcm.edu	37	1	117087138	117087139	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	203.0	45.0	276.0	0.0	0.222	.	.	.	none	.	CD58	40	.	NM_001144822	exon2	c.159_160del	p.53_54del	.	.	PASS	Pindel,Atlas-Indel
IL22RA2	116379	hgsc.bcm.edu	37	6	137468925	137468926	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	248.0	51.0	238.0	0.0	0.205645	0	.	.	none	.	IL22RA2	17	.	NM_052962	exon6	c.576_577insA	p.N192fs	.	.	PASS	Atlas-Indel
PCDH7	5099	hgsc.bcm.edu	37	4	30724220	30724221	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	86.0	13.0	103.0	0.0	0.151	.	.	.	none	.	PCDH7	215	.	NM_032457	exon1	c.1176_1177insC	p.Q392fs	.	.	PASS	Pindel,Atlas-Indel
CD79B	974	hgsc.bcm.edu	37	17	62006798	62006798	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	72.0	24.0	74.0	0.0	0.333333	0	.	.	none	CD79B,NS,lymphoid_neoplasm,-1,13	CD79B	38	13	NM_001039933	exon5	c.A590G	p.Y197C	ACCTCGTAGGTGT	.	PASS	Atlas-SNP
STAP2	55620	hgsc.bcm.edu	37	19	4328706	4328706	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	114.0	36.0	102.0	0.0	0.315789	0	.	.	none	.	STAP2	38	.	NM_001013841	exon6	c.G556A	p.G186S	ACACGCCGTCGGC	.	PASS	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	37	4	147560457	147560457	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	81.0	5.0	105.0	0.0	0.0617284	0	.	.	none	.	POU4F2	83	.	NM_004575	exon1	c.T165C	p.G55G	TGGTGGTGGCGGC	.	PASS	Atlas-SNP
EFHB	151651	hgsc.bcm.edu	37	3	19974810	19974810	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	122.0	38.0	152.0	0.0	0.311475	0	.	.	none	.	EFHB	186	.	NM_144715	exon1	c.G701A	p.G234E	ATGTTTCCAGCCT	.	PASS	Atlas-SNP
WDR70	55100	hgsc.bcm.edu	37	5	37703146	37703146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	194.0	44.0	188.0	0.0	0.226804	0	.	.	none	.	WDR70	76	.	NM_018034	exon13	c.G1373A	p.R458H	TTGAGCGTAGGAC	.	PASS	Atlas-SNP
EPS8L1	54869	hgsc.bcm.edu	37	19	55593906	55593906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	64.0	14.0	74.0	0.0	0.21875	0	.	.	none	.	EPS8L1	122	.	NM_133180	exon12	c.G1150A	p.D384N	CTGCGGGACAACG	.	PASS	Atlas-SNP
PHF20	51230	hgsc.bcm.edu	37	20	34458897	34458897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	67.0	20.0	51.0	0.0	0.298507	0	.	.	none	.	PHF20	94	.	NM_016436	exon8	c.T943G	p.Y315D	AAAAACTACTCGG	.	PASS	Atlas-SNP
CNBD1	168975	hgsc.bcm.edu	37	8	88298781	88298781	+	Silent	SNP	T	T	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	70.0	19.0	82.0	0.0	0.271429	0	.	.	none	.	CNBD1	206	.	NM_173538	exon8	c.T924A	p.L308L	AAAACTTGAAAAT	.	PASS	Atlas-SNP
FAM179B	23116	hgsc.bcm.edu	37	14	45535938	45535938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	106.0	31.0	113.0	0.0	0.292453	0	.	.	none	.	FAM179B	115	.	NM_015091	exon16	c.A4558G	p.N1520D	GAAAATAATCAAG	.	PASS	Atlas-SNP
TAS2R30	259293	hgsc.bcm.edu	37	12	11286093	11286093	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	178.0	41.0	170.0	0.0	0.230337	0	.	.	none	.	TAS2R30	28	.	NM_001097643	exon1	c.A751C	p.N251H	CAAAATTACAAAC	.	PASS	Atlas-SNP
ELAVL1	1994	hgsc.bcm.edu	37	19	8046064	8046064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	86.0	26.0	90.0	0.0	0.302326	0	.	.	none	.	ELAVL1	44	.	NM_001419	exon3	c.G179A	p.S60N	CCCAAGCTGTGTC	.	PASS	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	37	18	63527021	63527021	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	161.0	19.0	95.0	0.0	0.118012	0	.	.	none	.	CDH7	362	.	NM_004361	exon10	c.T1572C	p.D524D	AACGGATGCAACA	.	PASS	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	37	12	122248130	122248130	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	40.0	9.0	41.0	0.0	0.225	0	.	.	none	.	SETD1B	105	.	NM_015048	exon5	c.G1279T	p.E427X	AGTGGGGAGTTCC	.	PASS	Atlas-SNP
FAM205A	259308	hgsc.bcm.edu	37	9	34724155	34724155	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	128.0	35.0	103.0	0.0	0.273438	0	.	.	none	.	FAM205A	45	.	NM_001141917	exon4	c.G3082T	p.E1028X	GAGGCTCAGGGCC	.	PASS	Atlas-SNP
PLXNB2	23654	hgsc.bcm.edu	37	22	50720155	50720155	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	53.0	14.0	69.0	0.0	0.264151	0	.	.	none	.	PLXNB2	172	.	NM_012401	exon21	c.A3362T	p.K1121M	ATCGCCTTGTTCA	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691	bycluster	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	214.0	29.0	218.0	0.0	0.135514	0	G|0.500;T|0.500	0.500	weak	.	ZNF814	93	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	PASS	Atlas-SNP
PRSS33	260429	hgsc.bcm.edu	37	16	2835579	2835579	+	Missense_Mutation	SNP	G	G	A	rs7202954	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	11.0	6.0	2.0	2.0	0.545455	1	G|0.887;A|0.113	0.113	strong	PRSS33,NS,carcinoma,0,1	PRSS33	7	1	NM_152891	exon4	c.C311T	p.T104M	GAGAGCGTGCGGG	.	scavenged	Atlas-SNP
VSIG10L	147645	hgsc.bcm.edu	37	19	51841333	51841333	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	38.0	10.0	56.0	0.0	0.263158	0	.	.	none	.	VSIG10L	40	.	NM_001163922	exon6	c.T1859C	p.L620P	GGAGCCAGGGGCC	.	PASS	Atlas-SNP
PDZD8	118987	hgsc.bcm.edu	37	10	119133946	119133946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	70.0	16.0	90.0	0.0	0.228571	0	.	.	none	.	PDZD8	85	.	NM_173791	exon1	c.C793T	p.P265S	GCTGGGGCATGGG	.	PASS	Atlas-SNP
C6orf48	50854	hgsc.bcm.edu	37	6	31805113	31805113	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	258.0	69.0	258.0	0.0	0.267442	0	.	.	none	.	C6orf48	8	.	NM_001040437	exon4	c.G8A	p.R3K	TGGAGAGAAGCTT	.	PASS	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	37	6	393329	393329	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	68.0	19.0	81.0	0.0	0.279412	0	.	.	none	.	IRF4	65	.	NM_001195286	exon2	c.G177A	p.K59K	GGGCAAGCAGGAC	.	PASS	Atlas-SNP
PPP3R2	5535	hgsc.bcm.edu	37	9	104357008	104357008	+	Missense_Mutation	SNP	C	C	T	rs202237297	bycluster	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	87.0	7.0	76.0	0.0	0.0804598	0	.	.	weak	.	PPP3R2	38	.	NM_147180	exon1	c.G205A	p.G69S	CATCACCGTCGGT	.	PASS	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	37	13	42876626	42876626	+	Silent	SNP	C	C	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	97.0	26.0	104.0	0.0	0.268041	0	.	.	none	.	AKAP11	146	.	NM_016248	exon8	c.C3744A	p.P1248P	AAACCCCTCAGAC	.	PASS	Atlas-SNP
PCDH15	65217	hgsc.bcm.edu	37	10	55663021	55663021	+	Silent	SNP	A	A	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	121.0	29.0	173.0	0.0	0.239669	0	.	.	none	.	PCDH15	1715	.	NM_001142763	exon27	c.T3498C	p.T1166T	TACAGAAGTAAAC	.	PASS	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	37	2	131799003	131799003	+	Silent	SNP	C	C	T	rs374604987		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	42.0	9.0	66.0	0.0	0.214286	0	.	.	weak	.	ARHGEF4	89	.	NM_032995	exon9	c.C1305T	p.A435A	GCTGGCCGAGCTG	.	PASS	Atlas-SNP
UBE2D3	7323	hgsc.bcm.edu	37	4	103720570	103720570	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	505.0	137.0	512.0	1.0	0.271287	0.00195312	.	.	none	.	UBE2D3	25	.	NM_181893	exon6	c.G398A	p.R133K	TTATCTCTGTCTG	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203276261	203276261	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	63.0	16.0	57.0	0.0	0.253968	0	.	.	none	.	BTG2	16	.	NM_006763	exon2	c.A172C	p.K58Q	CCCGAAAAGCCGT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37139063	37139063	+	Missense_Mutation	SNP	G	G	A	rs200523275	by1000genomes	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	125.0	22.0	120.0	0.0	0.176	0	G|1.000;A|0.000	0.000	strong	PIM1,NS,lymphoid_neoplasm,0,2	PIM1	71	2	NM_001243186	exon4	c.G676A	p.E226K	ATCACGGAAAGGG	.	PASS	Atlas-SNP
SEMA4C	54910	hgsc.bcm.edu	37	2	97531445	97531445	+	Silent	SNP	G	G	A	rs139208590	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	93.0	28.0	92.0	0.0	0.301075	0	G|1.000;A|0.000	0.000	strong	.	SEMA4C	56	.	NM_017789	exon5	c.C378T	p.Y126Y	ACAGACGTACAGG	.	PASS	Atlas-SNP
HIST1H2BC	8347	hgsc.bcm.edu	37	6	26123915	26123915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	109.0	11.0	126.0	0.0	0.100917	0	.	.	none	.	HIST1H2BC	35	.	NM_003526	exon1	c.G218A	p.R73H	GCGATGCGCTCAA	.	PASS	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	37	6	393360	393360	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	46.0	14.0	57.0	0.0	0.304348	0	.	.	none	.	IRF4	65	.	NM_001195286	exon2	c.C208G	p.L70V	GCCGCGCTCTTCA	.	PASS	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	37	3	32022624	32022624	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	114.0	38.0	128.0	0.0	0.333333	0	.	.	none	.	OSBPL10	160	.	NM_017784	exon1	c.C48T	p.S16S	GCTGCTGCTGTTG	.	PASS	Atlas-SNP
VPS13A	23230	hgsc.bcm.edu	37	9	79875041	79875041	+	Silent	SNP	A	A	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	315.0	55.0	223.0	0.0	0.174603	0	.	.	none	VPS13A_ENST00000376634,colon,carcinoma,+2,3	VPS13A	735	3	NM_001018038	exon23	c.A2328T	p.R776R	TTTACGAATCTCA	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138416	37138416	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	80.0	12.0	70.0	0.0	0.15	0	.	.	none	.	PIM1	71	.	NM_001243186	exon1	c.C338T	p.A113V	TGCACGCCACCAA	.	PASS	Atlas-SNP
PCBP4	57060	hgsc.bcm.edu	37	3	51994890	51994890	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	73.0	4.0	91.0	0.0	0.0547945	0	.	.	none	.	PCBP4	35	.	NM_033008	exon4	c.C130A	p.R44R	GCTCCCGGATTCG	.	PASS	Atlas-SNP
C11orf40	143501	hgsc.bcm.edu	37	11	4592708	4592708	+	Missense_Mutation	SNP	C	C	G	rs79804156	bycluster	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	125.0	11.0	132.0	0.0	0.088	0	.	.	weak	.	C11orf40	37	.	NM_144663	exon4	c.G599C	p.C200S	TCCATACAGTTTT	.	PASS	Atlas-SNP
TRDN	10345	hgsc.bcm.edu	37	6	123869636	123869636	+	Silent	SNP	A	A	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	103.0	26.0	99.0	0.0	0.252427	0	.	.	none	.	TRDN	88	.	NM_001256022	exon3	c.T354C	p.D118D	TTCTTCATCTTCA	.	PASS	Atlas-SNP
XKR4	114786	hgsc.bcm.edu	37	8	56270330	56270330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	219.0	56.0	231.0	0.0	0.255708	0	.	.	none	XKR4,colon,carcinoma,0,1	XKR4	104	1	NM_052898	exon2	c.C899T	p.A300V	AGTATGCGGATGT	.	PASS	Atlas-SNP
ALOXE3	59344	hgsc.bcm.edu	37	17	8012556	8012556	+	Missense_Mutation	SNP	C	C	T	rs121434232	alternate_allele	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	51.0	16.0	44.0	0.0	0.313726	0	.	.	alt	.	ALOXE3	145	.	NM_001165960	exon12	c.G1894A	p.V632I	CCAGGACGCCGCG	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	8993393	8993393	+	Missense_Mutation	SNP	C	C	A	rs376237412	alternate_allele	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	114.0	28.0	115.0	0.0	0.245614	0	.	.	alt	.	MUC16	4315	.	NM_024690	exon66	c.G41696T	p.R13899M	CTGTCCCTGTCCA	.	PASS	Atlas-SNP
IGJ	3512	hgsc.bcm.edu	37	4	71522967	71522967	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	87.0	18.0	91.0	0.0	0.206897	0	.	.	none	.	IGJ	13	.	NM_144646	exon3	c.C230T	p.S77L	AATGGTGAGGTGG	.	PASS	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	37	6	393206	393206	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	67.0	22.0	89.0	1.0	0.328358	0.011236	.	.	none	IRF4_ENST00000380956,NS,carcinoma,+2,4	IRF4	65	4	NM_001195286	exon2	c.C54G	p.S18R	GGTGAGCTGCGGC	.	scavenged	Atlas-SNP
MMEL1	79258	hgsc.bcm.edu	37	1	2527447	2527447	+	Splice_Site	SNP	C	C	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	109.0	28.0	120.0	0.0	0.256881	0	.	.	none	.	MMEL1	64	.	NM_033467	exon16	c.1500+1G>T	.	CACATACCTTCTC	.	PASS	Atlas-SNP
FOXA2	3170	hgsc.bcm.edu	37	20	22562836	22562836	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	74.0	20.0	99.0	0.0	0.27027	0	.	.	none	.	FOXA2	48	.	NM_021784	exon2	c.G1044A	p.Q348Q	CTGCTGCTGCTGC	.	PASS	Atlas-SNP
MYH14	79784	hgsc.bcm.edu	37	19	50753007	50753007	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	96.0	28.0	105.0	0.0	0.291667	0	.	.	none	MYH14_ENST00000262269,NS,carcinoma,+1,2	MYH14	261	2	NM_001077186	exon14	c.G1583A	p.R528H	ACCAGCGTGAGGG	.	PASS	Atlas-SNP
FAM47C	442444	hgsc.bcm.edu	37	X	37028925	37028925	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	68.0	35.0	79.0	0.0	0.514706	0	.	.	none	.	FAM47C	267	.	NM_001013736	exon1	c.G2442A	p.P814P	CTGCCCGGAGCCT	.	PASS	Atlas-SNP
SDK1	221935	hgsc.bcm.edu	37	7	4153851	4153851	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	94.0	32.0	101.0	0.0	0.340426	0	.	.	none	.	SDK1	361	.	NM_152744	exon25	c.C3768T	p.N1256N	CTTCAACGCCGTC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138919	37138919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	63.0	11.0	53.0	0.0	0.174603	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.C532T	p.P178S	CGAGTGCCCATGG	.	PASS	Atlas-SNP
KCNT2	343450	hgsc.bcm.edu	37	1	196451484	196451484	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	229.0	53.0	227.0	0.0	0.231441	0	.	.	none	.	KCNT2	243	.	NM_198503	exon4	c.A301T	p.S101C	GTAGACTTCTGTT	.	PASS	Atlas-SNP
TNF	7124	hgsc.bcm.edu	37	6	31544592	31544592	+	Splice_Site	SNP	G	G	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	164.0	61.0	243.0	0.0	0.371951	0	.	.	none	.	TNF	15	.	NM_000594	exon3	c.280+1G>C	.	TTGTAGGTAAGAG	.	PASS	Atlas-SNP
DOCK3	1795	hgsc.bcm.edu	37	3	51315142	51315142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	255.0	62.0	242.0	0.0	0.243137	0	.	.	none	DOCK3_ENST00000266037,colon,carcinoma,0,1	DOCK3	397	1	NM_004947	exon26	c.C2780T	p.A927V	AGGAGGCGGTAAG	.	PASS	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	37	11	58980009	58980009	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	133.0	45.0	121.0	0.0	0.338346	0	.	.	none	.	MPEG1	72	.	NM_001039396	exon1	c.C330T	p.S110S	GGAGGTGCTACTC	.	PASS	Atlas-SNP
BAAT	570	hgsc.bcm.edu	37	9	104125078	104125078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	171.0	31.0	170.0	0.0	0.181287	0	.	.	none	BAAT,NS,carcinoma,+1,2	BAAT	52	2	NM_001127610	exon4	c.C889T	p.R297C	AAGTGCGATAGAG	.	PASS	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	37	6	393328	393328	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	68.0	20.0	83.0	0.0	0.294118	0	.	.	none	.	IRF4	65	.	NM_001195286	exon2	c.A176G	p.K59R	CGGGCAAGCAGGA	.	PASS	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	37	2	210690724	210690724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	95.0	28.0	94.0	0.0	0.294737	0	.	.	none	UNC80_ENST00000439458,NS,carcinoma,0,1	UNC80	280	1	NM_182587	exon14	c.G2425A	p.G809R	GGTGAAGGACACC	.	PASS	Atlas-SNP
KIAA1244	57221	hgsc.bcm.edu	37	6	138528237	138528237	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	85.0	18.0	101.0	0.0	0.211765	0	.	.	none	.	KIAA1244	236	.	NM_020340	exon3	c.C196A	p.Q66K	CTGGCCCAACATG	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138609	37138609	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	106.0	19.0	99.0	0.0	0.179245	0	.	.	none	.	PIM1	71	.	NM_001243186	exon2	c.G416A	p.G139D	GCGGCGGCTTCGG	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138267	37138267	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	39.0	9.0	30.0	0.0	0.230769	0	.	.	none	.	PIM1	71	.	NM_001243186	exon1	c.G189A	p.R63R	CCCCAGGCATAGC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37139042	37139042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	125.0	57.0	111.0	0.0	0.456	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.G655A	p.D219N	GTGCAAGATCTCT	.	PASS	Atlas-SNP
GAL3ST1	9514	hgsc.bcm.edu	37	22	30951371	30951371	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	31.0	10.0	40.0	0.0	0.322581	0	.	.	none	.	GAL3ST1	44	.	NM_004861	exon4	c.C841T	p.R281C	CGCGGCGGGCGTT	.	PASS	Atlas-SNP
STOML2	30968	hgsc.bcm.edu	37	9	35100654	35100654	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	129.0	12.0	113.0	0.0	0.0930233	0	.	.	none	.	STOML2	27	.	NM_013442	exon9	c.G874A	p.D292N	TGGAGTCCTTGGC	.	PASS	Atlas-SNP
EIF3A	8661	hgsc.bcm.edu	37	10	120824953	120824953	+	Silent	SNP	A	A	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	129.0	35.0	136.0	0.0	0.271318	0	.	.	none	.	EIF3A	142	.	NM_003750	exon7	c.T1080G	p.G360G	TTGAAGACCTAGT	.	PASS	Atlas-SNP
VPS13B	157680	hgsc.bcm.edu	37	8	100887760	100887760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	162.0	61.0	172.0	0.0	0.376543	0	.	.	none	.	VPS13B	811	.	NM_017890	exon62	c.C11935T	p.P3979S	CCATGCCCTGTGG	.	PASS	Atlas-SNP
PRKCH	5583	hgsc.bcm.edu	37	14	61857975	61857975	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	106.0	29.0	106.0	0.0	0.273585	0	.	.	none	.	PRKCH	89	.	NM_006255	exon2	c.G396T	p.V132V	ATTTGTGGTAATA	.	PASS	Atlas-SNP
ZNF677	342926	hgsc.bcm.edu	37	19	53740528	53740528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	139.0	46.0	139.0	0.0	0.330935	0	.	.	none	ZNF677,colon,carcinoma,0,2	ZNF677	94	2	NM_182609	exon5	c.G1452C	p.E484D	AGGTTTCTCTCCA	.	PASS	Atlas-SNP
CDH20	28316	hgsc.bcm.edu	37	18	59203733	59203733	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	252.0	41.0	126.0	0.0	0.162698	0	.	.	none	.	CDH20	117	.	NM_031891	exon7	c.A1279C	p.I427L	TACTCCATTGATA	.	PASS	Atlas-SNP
PDZD8	118987	hgsc.bcm.edu	37	10	119133982	119133982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	70.0	14.0	92.0	0.0	0.2	0	.	.	none	.	PDZD8	85	.	NM_173791	exon1	c.T757C	p.F253L	CCTCGAAGTCGAT	.	PASS	Atlas-SNP
INTS12	57117	hgsc.bcm.edu	37	4	106621116	106621116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	113.0	27.0	112.0	0.0	0.238938	0	.	.	none	.	INTS12	35	.	NM_020395	exon3	c.C47T	p.A16V	CCTAGTGCTTTCA	.	PASS	Atlas-SNP
PLCB1	23236	hgsc.bcm.edu	37	20	8130945	8130945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	263.0	61.0	311.0	0.0	0.231939	0	.	.	none	.	PLCB1	394	.	NM_015192	exon2	c.T104A	p.V35D	AGGACTCAACTAT	.	PASS	Atlas-SNP
HS6ST3	266722	hgsc.bcm.edu	37	13	96743654	96743654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	35.0	15.0	22.0	0.0	0.428571	0	.	.	none	.	HS6ST3	54	.	NM_153456	exon1	c.G538A	p.G180S	AAAGCGGGTCAGA	.	PASS	Atlas-SNP
HAS2	3037	hgsc.bcm.edu	37	8	122641110	122641110	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	172.0	42.0	213.0	0.0	0.244186	0	.	.	none	.	HAS2	87	.	NM_005328	exon2	c.C471T	p.P157P	CTCACCGGGACCC	.	PASS	Atlas-SNP
PTMA	5757	hgsc.bcm.edu	37	2	232577559	232577559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	50.0	3.0	53.0	1.0	0.06	0.0188679	.	.	none	PTMA,NS,carcinoma,0,2	PTMA	12	2	NM_001099285	exon5	c.T334C	p.X112Q	GATGACTAGACAG	.	scavenged	Atlas-SNP
MAGEL2	54551	hgsc.bcm.edu	37	15	23889331	23889331	+	Nonsense_Mutation	SNP	G	G	A	rs368965952	alternate_allele	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	87.0	26.0	97.0	0.0	0.298851	0	.	.	alt	.	MAGEL2	108	.	NM_019066	exon1	c.C3559T	p.R1187X	ATGCTCGAGGGCC	.	PASS	Atlas-SNP
FKBP5	2289	hgsc.bcm.edu	37	6	35610531	35610531	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	278.0	111.0	228.0	0.0	0.399281	0	.	.	none	.	FKBP5	64	.	NM_001145775	exon3	c.A71C	p.D24A	GTAATATCCTCTC	.	PASS	Atlas-SNP
NR3C2	4306	hgsc.bcm.edu	37	4	149002555	149002555	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	103.0	36.0	110.0	0.0	0.349515	0	.	.	none	NR3C2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	NR3C2	94	1	NM_000901	exon9	c.C2895T	p.S965S	CTGGTCGCTGATG	.	PASS	Atlas-SNP
SRGAP1	57522	hgsc.bcm.edu	37	12	64485076	64485076	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	61.0	11.0	73.0	0.0	0.180328	0	.	.	none	.	SRGAP1	146	.	NM_020762	exon12	c.A1457C	p.K486T	CCCCTAAGCCCCA	.	PASS	Atlas-SNP
TTLL6	284076	hgsc.bcm.edu	37	17	46847276	46847276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	420.0	120.0	440.0	0.0	0.285714	0	.	.	none	.	TTLL6	113	.	NM_001130918	exon14	c.A2224G	p.K742E	AAGATTTTAACAT	.	PASS	Atlas-SNP
ZNF425	155054	hgsc.bcm.edu	37	7	148801430	148801430	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	74.0	27.0	84.0	0.0	0.364865	0	.	.	none	ZNF425,NS,carcinoma,0,1	ZNF425	99	1	NM_001001661	exon4	c.G1533A	p.S511S	GAGCCGCGACTGC	.	PASS	Atlas-SNP
AKR1B15	441282	hgsc.bcm.edu	37	7	134260279	134260279	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	92.0	40.0	103.0	0.0	0.434783	0	.	.	none	.	AKR1B15	105	.	NM_001080538	exon7	c.A621T	p.K207N	ATATAAACCAGTG	.	PASS	Atlas-SNP
MTNR1B	4544	hgsc.bcm.edu	37	11	92703057	92703057	+	Missense_Mutation	SNP	G	G	A	rs148309052		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	52.0	11.0	57.0	0.0	0.211538	0	G|1.000;A|0.000	0.000	weak	.	MTNR1B	75	.	NM_005959	exon1	c.G166A	p.V56M	GACGTCGTGGGCA	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230278	23230278	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	103.0	35.0	171.0	1.0	0.339806	0.00584795	.	.	none	IGLL5,NS,lymphoid_neoplasm,0,1	IGLL5	26	1	NM_001178126	exon1	c.G45A	p.E15E	TGAGGAGCTGGGC	.	scavenged	Atlas-SNP
CPAMD8	27151	hgsc.bcm.edu	37	19	17081795	17081795	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	43.0	11.0	43.0	0.0	0.255814	0	.	.	none	CPAMD8,right_upper_lobe,carcinoma,+1,1	CPAMD8	192	1	NM_015692	exon18	c.C2260T	p.Q754X	CGTCCTGCCGGTG	.	PASS	Atlas-SNP
ANKHD1	54882	hgsc.bcm.edu	37	5	139818110	139818110	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	109.0	19.0	127.0	0.0	0.174312	0	.	.	none	.	ANKHD1	233	.	NM_024668	exon3	c.G525A	p.L175L	GAGACTGACATCC	.	PASS	Atlas-SNP
CCDC47	57003	hgsc.bcm.edu	37	17	61833644	61833644	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	171.0	40.0	159.0	0.0	0.233918	0	.	.	none	.	CCDC47	34	.	NM_020198	exon8	c.C904G	p.L302V	CTGACAGGATGGC	.	PASS	Atlas-SNP
MAEA	10296	hgsc.bcm.edu	37	4	1326571	1326571	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	122.0	40.0	136.0	0.0	0.327869	0	.	.	none	.	MAEA	39	.	NM_001017405	exon6	c.C683T	p.A228V	GCCAAGCAGAAGG	.	PASS	Atlas-SNP
SHANK2	22941	hgsc.bcm.edu	37	11	70332437	70332437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	86.0	26.0	114.0	0.0	0.302326	0	.	.	none	.	SHANK2	340	.	NM_133266	exon10	c.G2197A	p.A733T	TAGTGGCGTCCAC	.	PASS	Atlas-SNP
PPP2R2B	5521	hgsc.bcm.edu	37	5	145979852	145979852	+	Splice_Site	SNP	A	A	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	131.0	36.0	210.0	0.0	0.274809	0	.	.	none	.	PPP2R2B	271	.	NM_001271948	exon9	c.927+2T>G	.	TTCTATACCTGGT	.	PASS	Atlas-SNP
NLRP9	338321	hgsc.bcm.edu	37	19	56244737	56244737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	138.0	41.0	163.0	0.0	0.297101	0	.	.	none	.	NLRP9	163	.	NM_176820	exon2	c.G460A	p.D154N	TTCCATCAGGACC	.	PASS	Atlas-SNP
UNC80	285175	hgsc.bcm.edu	37	2	210694100	210694100	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	131.0	40.0	166.0	0.0	0.305344	0	.	.	none	.	UNC80	280	.	NM_032504	exon15	c.G2623A	p.D875N	GTCACTGACAGTA	.	PASS	Atlas-SNP
POSTN	10631	hgsc.bcm.edu	37	13	38158888	38158888	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	217.0	59.0	234.0	2.0	0.271889	0.00854701	.	.	none	POSTN,colon,carcinoma,0,1	POSTN	161	1	NM_006475	exon8	c.T1073C	p.I358T	AAATGGATCACAC	.	scavenged	Atlas-SNP
SDPR	8436	hgsc.bcm.edu	37	2	192700851	192700851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	154.0	43.0	136.0	1.0	0.279221	0.00735294	.	.	none	SDPR,right_upper_lobe,carcinoma,+1,1	SDPR	67	1	NM_004657	exon2	c.C1076T	p.A359V	GAGGTCGCCTTCT	.	scavenged	Atlas-SNP
CRYBG3	131544	hgsc.bcm.edu	37	3	97607289	97607289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	276.0	50.0	261.0	2.0	0.181159	0.00766284	.	.	none	CRYBG3,NS,carcinoma,-1,1	CRYBG3	86	1	NM_153605	exon9	c.C7394T	p.P2465L	TACATCCGCTTCA	.	scavenged	Atlas-SNP
ITGB4	3691	hgsc.bcm.edu	37	17	73727034	73727034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	37.0	8.0	36.0	0.0	0.216216	0	.	.	none	.	ITGB4	165	.	NM_001005731	exon9	c.G1081A	p.E361K	CTGGAGGAGGCCT	.	PASS	Atlas-SNP
PLK5	126520	hgsc.bcm.edu	37	19	1535205	1535205	+	Missense_Mutation	SNP	G	G	C	rs265282	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	6.0	6.0	0.0	0.0	1	.	G|0.681;C|0.319	0.319	strong	.	PLK5	1	.	NM_001243079	exon14	c.G967C	p.G323R	ACCACCGGACAGC	.	PASS	Atlas-SNP
PPP2R2C	5522	hgsc.bcm.edu	37	4	6325285	6325285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	65.0	17.0	93.0	0.0	0.261538	0	.	.	none	.	PPP2R2C	63	.	NM_181876	exon9	c.G1088A	p.R363H	AACATGCGGAAGA	.	PASS	Atlas-SNP
NFYA	4800	hgsc.bcm.edu	37	6	41060751	41060751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	127.0	53.0	76.0	0.0	0.417323	0	.	.	none	.	NFYA	33	.	NM_002505	exon8	c.A815G	p.Y272C	AACAATACCACCG	.	PASS	Atlas-SNP
OR7G1	125962	hgsc.bcm.edu	37	19	9226244	9226244	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	135.0	42.0	107.0	0.0	0.311111	0	.	.	none	.	OR7G1	53	.	NM_001005192	exon1	c.C196G	p.L66V	AGGAGAGATTAAA	.	PASS	Atlas-SNP
MDGA1	266727	hgsc.bcm.edu	37	6	37605198	37605198	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	105.0	47.0	94.0	0.0	0.447619	0	.	.	none	.	MDGA1	104	.	NM_153487	exon17	c.C2814T	p.S938S	TGGGCTGGACTGG	.	PASS	Atlas-SNP
LRRC7	57554	hgsc.bcm.edu	37	1	70501838	70501838	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	153.0	46.0	136.0	0.0	0.300654	0	.	.	none	.	LRRC7	400	.	NM_020794	exon17	c.T1916C	p.I639T	TGAGGATTGGGGA	.	PASS	Atlas-SNP
CRYBB3	1417	hgsc.bcm.edu	37	22	25603042	25603042	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	73.0	17.0	68.0	0.0	0.232877	0	.	.	none	.	CRYBB3	13	.	NM_004076	exon6	c.C499T	p.P167S	GGCTACCGTGGGC	.	PASS	Atlas-SNP
RFX2	5990	hgsc.bcm.edu	37	19	6016117	6016117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	69.0	20.0	54.0	0.0	0.289855	0	.	.	none	.	RFX2	60	.	NM_000635	exon7	c.C763T	p.R255W	GCCGCCGCGTTCT	.	PASS	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	37	11	58978697	58978697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	64.0	16.0	77.0	0.0	0.25	0	.	.	none	.	MPEG1	72	.	NM_001039396	exon1	c.G1642A	p.D548N	CTAAATCTCTGGA	.	PASS	Atlas-SNP
FEM1B	10116	hgsc.bcm.edu	37	15	68583506	68583506	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	109.0	26.0	135.0	0.0	0.238532	0	.	.	none	.	FEM1B	38	.	NM_015322	exon2	c.G1810A	p.A604T	GCCCGAGCAGTTC	.	PASS	Atlas-SNP
ZNF707	286075	hgsc.bcm.edu	37	8	144775926	144775926	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	111.0	27.0	102.0	0.0	0.243243	0	.	.	none	.	ZNF707	21	.	NM_001100598	exon6	c.C342T	p.A114A	AAGAGCCAGGGAA	.	PASS	Atlas-SNP
ZNF648	127665	hgsc.bcm.edu	37	1	182026466	182026466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	64.0	20.0	69.0	0.0	0.3125	0	.	.	none	.	ZNF648	111	.	NM_001009992	exon2	c.C680T	p.A227V	TTCCGCGCTTTTG	.	PASS	Atlas-SNP
FN1	2335	hgsc.bcm.edu	37	2	216257691	216257691	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	126.0	31.0	135.0	0.0	0.246032	0	.	.	none	.	FN1	521	.	NM_212482	exon25	c.C4032T	p.G1344G	CTCGCCGCCATTA	.	PASS	Atlas-SNP
ZSCAN25	221785	hgsc.bcm.edu	37	7	99219100	99219100	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	83.0	31.0	55.0	0.0	0.373494	0	.	.	none	.	.	.	.	NM_145115	exon5	c.G492A	p.G164G	ATGGGGGATGCCC	.	PASS	Atlas-SNP
TMEM54	113452	hgsc.bcm.edu	37	1	33363889	33363889	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	68.0	21.0	90.0	0.0	0.308824	0	.	.	none	.	TMEM54	12	.	NM_033504	exon2	c.G48A	p.V16V	CATCAGCACCTTC	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126242688	126242688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	126.0	26.0	147.0	0.0	0.206349	0	.	.	none	.	FAT4	1752	.	NM_024582	exon1	c.G5122A	p.D1708N	CTGGTGGATGTTT	.	PASS	Atlas-SNP
KLHL14	57565	hgsc.bcm.edu	37	18	30350266	30350266	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	204.0	38.0	165.0	0.0	0.186275	0	.	.	none	.	KLHL14	92	.	NM_020805	exon2	c.C289T	p.Q97X	GCGGCTGCTGCTG	.	PASS	Atlas-SNP
HIST1H2AI	8329	hgsc.bcm.edu	37	6	27776072	27776072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	272.0	20.0	224.0	0.0	0.0735294	0	.	.	none	.	HIST1H2AI	9	.	NM_003509	exon1	c.G85A	p.G29S	CCCGTAGGCCGAG	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230279	23230279	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	102.0	34.0	166.0	0.0	0.333333	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.C46T	p.L16L	GAGGAGCTGGGCC	.	PASS	Atlas-SNP
DGKD	8527	hgsc.bcm.edu	37	2	234363499	234363499	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	53.0	10.0	46.0	0.0	0.188679	0	.	.	none	.	DGKD	106	.	NM_152879	exon19	c.T2355A	p.D785E	GCGCGATGAGCAC	.	PASS	Atlas-SNP
KANK2	25959	hgsc.bcm.edu	37	19	11289041	11289041	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	82.0	20.0	63.0	0.0	0.243902	0	.	.	none	.	KANK2	47	.	NM_015493	exon4	c.G1524A	p.Q508Q	CACGAACTGGAGG	.	PASS	Atlas-SNP
MESP2	145873	hgsc.bcm.edu	37	15	90320149	90320149	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	26.0	11.0	43.0	0.0	0.423077	0	.	.	none	.	MESP2	20	.	NM_001039958	exon1	c.G561A	p.G187G	GCAGGGGCAGGGG	.	PASS	Atlas-SNP
HIST1H1E	3008	hgsc.bcm.edu	37	6	26157108	26157108	+	Missense_Mutation	SNP	G	G	A	rs201935674	by1000genomes	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	70.0	20.0	102.0	0.0	0.285714	0	G|0.999;A|0.001	0.001	strong	HIST1H1E,NS,lymphoid_neoplasm,-1,3	HIST1H1E	69	3	NM_005321	exon1	c.G490A	p.A164T	GCTGCAGCTGCTG	.	PASS	Atlas-SNP
TGIF1	7050	hgsc.bcm.edu	37	18	3451989	3451989	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	226.0	28.0	152.0	0.0	0.123894	0	.	.	none	.	TGIF1	41	.	NM_170695	exon1	c.G12A	p.A4A	TCTAGCGCAGAGC	.	PASS	Atlas-SNP
FOXC1	2296	hgsc.bcm.edu	37	6	1610821	1610821	+	Nonsense_Mutation	SNP	C	C	G	rs372857241	alternate_allele	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	32.0	10.0	39.0	0.0	0.3125	0	.	.	alt	.	FOXC1	19	.	NM_001453	exon1	c.C141G	p.Y47X	CGTGTACTCGCAC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138392	37138392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	98.0	30.0	79.0	1.0	0.306122	0.0126582	.	.	none	PIM1,right_lower_lobe,carcinoma,-1,1	PIM1	71	1	NM_001243186	exon1	c.C314T	p.A105V	TGCGCGCCGCGCC	.	scavenged	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37139203	37139203	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	96.0	21.0	85.0	0.0	0.21875	0	.	.	none	PIM1,NS,lymphoid_neoplasm,0,1	PIM1	71	1	NM_001243186	exon4	c.G816A	p.E272E	CGGCGAGCTCAAG	.	PASS	Atlas-SNP
CCDC178	374864	hgsc.bcm.edu	37	18	30950118	30950118	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	129.0	41.0	126.0	0.0	0.317829	0	.	.	none	.	.	.	.	NM_001105528	exon5	c.C244T	p.R82X	GACGTCGACATGG	.	PASS	Atlas-SNP
DSPP	1834	hgsc.bcm.edu	37	4	88533881	88533881	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	124.0	42.0	141.0	0.0	0.33871	0	.	.	none	.	DSPP	174	.	NM_014208	exon4	c.A543T	p.E181D	CCAAGAAGATGGA	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23235887	23235887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	28.0	13.0	49.0	0.0	0.464286	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon2	c.C214G	p.L72V	CTCCTGCTCCAGC	.	PASS	Atlas-SNP
TMEM168	64418	hgsc.bcm.edu	37	7	112415375	112415375	+	Splice_Site	SNP	T	T	C	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	72.0	4.0	67.0	0.0	0.0555556	0	.	.	none	.	TMEM168	84	.	NM_022484	exon4	c.1129-2A>G	.	GTTGGCTAAAAGA	.	PASS	Atlas-SNP
OR2L8	391190	hgsc.bcm.edu	37	1	248112303	248112303	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	358.0	99.0	405.0	0.0	0.276536	0	.	.	none	OR2L8,right_lower_lobe,carcinoma,0,1	OR2L8	92	1	NM_001001963	exon1	c.C144G	p.I48M	TCTCATCTTCTTG	.	PASS	Atlas-SNP
AUP1	550	hgsc.bcm.edu	37	2	74756626	74756626	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	93.0	21.0	91.0	0.0	0.225806	0	.	.	none	.	AUP1	29	.	NM_181575	exon2	c.G51A	p.R17R	CGGAAGCCTGGGG	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138908	37138908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	61.0	14.0	54.0	0.0	0.229508	0	.	.	none	PIM1,NS,lymphoid_neoplasm,0,1	PIM1	71	1	NM_001243186	exon4	c.G521A	p.G174D	CTAATGGCACTCG	.	PASS	Atlas-SNP
RGS6	9628	hgsc.bcm.edu	37	14	72943455	72943455	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	92.0	13.0	112.0	0.0	0.141304	0	.	.	none	RGS6,NS,carcinoma,+1,1	RGS6	92	1	NM_001204424	exon11	c.G699A	p.V233V	GTCCGTGTATGGC	.	PASS	Atlas-SNP
RAB3GAP2	25782	hgsc.bcm.edu	37	1	220326665	220326665	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	284.0	72.0	295.0	0.0	0.253521	0	.	.	none	.	RAB3GAP2	120	.	NM_012414	exon33	c.C3729T	p.P1243P	AGGAGTGGGTGTG	.	PASS	Atlas-SNP
ADAMTS1	9510	hgsc.bcm.edu	37	21	28214839	28214839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	139.0	40.0	120.0	0.0	0.28777	0	.	.	none	.	ADAMTS1	131	.	NM_006988	exon2	c.G896T	p.R299L	GAATTACGAATGC	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	203.0	28.0	216.0	0.0	0.137931	0	C|0.500;T|0.500	0.500	weak	.	ZNF814	93	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	PASS	Atlas-SNP
VCAM1	7412	hgsc.bcm.edu	37	1	101200181	101200181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CQ-01A-11D-A382-10	TCGA-FF-A7CQ-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e4fe50f-0ee6-46c2-9795-2e2c1c8a86bf	5f7ab27c-4bb5-430c-a173-433d42f767d5	165.0	47.0	161.0	0.0	0.284848	0	.	.	none	VCAM1,NS,carcinoma,0,1	VCAM1	111	1	NM_001078	exon8	c.C1916T	p.A639V	AAAAAGCGGAGAC	.	PASS	Atlas-SNP