Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
TTC24	164118	hgsc.bcm.edu	37	1	156551615	156551625	+	Frame_Shift_Del	DEL	GGGAGAAGCCT	GGGAGAAGCCT	-	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	GGGAGAAGCCT	GGGAGAAGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	69.0	13.0	87.0	0.0	0.188	.	.	.	none	.	TTC24	46	.	NM_001105669	exon2	c.458_468del	p.153_156del	.	.	PASS	Pindel,Atlas-Indel
TRAPPC9	83696	hgsc.bcm.edu	37	8	141468446	141468448	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	120.0	24.0	137.0	0.0	0.200	.	.	.	none	.	TRAPPC9	114	.	NM_031466	exon1	c.217_219del	p.73_73del	.	.	PASS	Pindel,Atlas-Indel
PANK2	80025	hgsc.bcm.edu	37	20	3891366	3891367	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	148.0	39.0	131.0	0.0	0.264	.	.	.	none	.	PANK2	37	.	NM_153638	exon3	c.1124_1125insA	p.L375fs	.	.	PASS	Pindel,Atlas-Indel
MLL2	8085	hgsc.bcm.edu	37	12	49426852	49426853	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	69.0	14.0	66.0	0.0	0.203	.	.	.	none	.	MLL2	1173	.	NM_003482	exon39	c.11636_11637del	p.3879_3879del	.	.	PASS	Pindel,Atlas-Indel
BTG2	7832	hgsc.bcm.edu	37	1	203276240	203276241	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	52.0	10.0	76.0	0.0	0.192308	0	.	.	none	.	BTG2	16	.	NM_006763	exon2	c.150_151del	p.50_51del	.	.	PASS	Atlas-Indel
ATP2A3	489	hgsc.bcm.edu	37	17	3844342	3844343	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	46.0	25.0	81.0	0.0	0.543478	0	.	.	none	.	ATP2A3	148	.	NM_174958	exon14	c.2023_2024insG	p.C675fs	.	.	PASS	Atlas-Indel
ATP2A3	489	hgsc.bcm.edu	37	17	3844337	3844338	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	46.0	25.0	78.0	0.0	0.543478	0	.	.	none	.	ATP2A3	148	.	NM_174958	exon14	c.2028_2029del	p.676_677del	.	.	PASS	Atlas-Indel
ATP2A3	489	hgsc.bcm.edu	37	17	3844337	3844342	+	In_Frame_Del	DEL	GAAGCA	GAAGCA	-	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	GAAGCA	GAAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	50.0	25.0	80.0	0.0	0.500	.	.	.	none	.	ATP2A3	148	.	NM_005173	exon14	c.2024_2029del	p.675_677del	.	.	PASS	Pindel
BTG1	694	hgsc.bcm.edu	37	12	92539203	92539203	+	Silent	SNP	G	G	A	rs369374957	alternate_allele	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	123.0	37.0	150.0	0.0	0.300813	0	.	.	alt	BTG1,NS,lymphoid_neoplasm,0,3	BTG1	30	3	NM_001731	exon1	c.C109T	p.L37L	TCTGCAGCTGTCG	.	PASS	Atlas-SNP
C10orf10	11067	hgsc.bcm.edu	37	10	45473249	45473249	+	Missense_Mutation	SNP	C	C	T	rs143373089	bycluster;byfrequency;by1000genomes	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	47.0	11.0	60.0	0.0	0.234043	0	C|0.998;T|0.002	0.002	strong	.	C10orf10	6	.	NM_007021	exon2	c.G230A	p.R77H	GCAGGGCGGCCCT	.	PASS	Atlas-SNP
HIST1H2BO	8348	hgsc.bcm.edu	37	6	27861456	27861456	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	144.0	40.0	106.0	0.0	0.277778	0	.	.	none	.	HIST1H2BO	30	.	NM_003527	exon1	c.G216A	p.E72E	CTTTGAGCGCATC	.	PASS	Atlas-SNP
NMRAL1	57407	hgsc.bcm.edu	37	16	4516347	4516347	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	42.0	19.0	40.0	0.0	0.452381	0	.	.	none	.	NMRAL1	31	.	NM_020677	exon4	c.C336T	p.S112S	CAGGCCGCTGTAG	.	PASS	Atlas-SNP
LSAMP	4045	hgsc.bcm.edu	37	3	115805359	115805359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	115.0	44.0	145.0	0.0	0.382609	0	.	.	none	.	LSAMP	62	.	NM_002338	exon2	c.G200A	p.R67H	CCAGAACGGTTCA	.	PASS	Atlas-SNP
AMPD3	272	hgsc.bcm.edu	37	11	10523046	10523046	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	61.0	23.0	44.0	0.0	0.377049	0	.	.	none	.	AMPD3	68	.	NM_000480	exon12	c.G1778A	p.R593Q	TGTTCCGGCCGCA	.	PASS	Atlas-SNP
ITGA4	3676	hgsc.bcm.edu	37	2	182346352	182346352	+	Missense_Mutation	SNP	G	G	A	rs148901650	bycluster;by1000genomes	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	62.0	24.0	82.0	0.0	0.387097	0	G|1.000;A|0.000	0.000	strong	ITGA4,NS,carcinoma,+1,1	ITGA4	142	1	NM_000885	exon7	c.G782A	p.R261Q	ATTTTCGGAGCCA	.	PASS	Atlas-SNP
POU2F2	5452	hgsc.bcm.edu	37	19	42603967	42603967	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	77.0	25.0	75.0	0.0	0.324675	0	.	.	none	.	POU2F2	106	.	NM_002698	exon6	c.C310T	p.Q104X	GCTGCTGTATGTC	.	PASS	Atlas-SNP
NDN	4692	hgsc.bcm.edu	37	15	23931597	23931597	+	Silent	SNP	G	G	A	rs142210120	bycluster;byfrequency;by1000genomes	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	84.0	30.0	86.0	0.0	0.357143	0	G|0.998;A|0.002	0.002	strong	NDN,right_upper_lobe,carcinoma,0,1	NDN	79	1	NM_002487	exon1	c.C768T	p.P256P	GTATTCGGGCGGC	.	PASS	Atlas-SNP
SBF2	81846	hgsc.bcm.edu	37	11	10051375	10051375	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	57.0	19.0	69.0	0.0	0.333333	0	.	.	none	SBF2,NS,carcinoma,-2,1	SBF2	146	1	NM_030962	exon5	c.C450T	p.V150V	CAAGGAGACATTC	.	PASS	Atlas-SNP
SH3BP4	23677	hgsc.bcm.edu	37	2	235951281	235951281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	76.0	29.0	83.0	1.0	0.381579	0.0120482	.	.	none	SH3BP4,right_upper_lobe,carcinoma,+1,2	SH3BP4	109	2	NM_014521	exon4	c.G1868A	p.R623K	GGCAAAGGAGGTT	.	scavenged	Atlas-SNP
LRRTM1	347730	hgsc.bcm.edu	37	2	80529497	80529497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	103.0	23.0	123.0	0.0	0.223301	0	.	.	none	.	LRRTM1	251	.	NM_178839	exon2	c.T1448C	p.M483T	GCAGACATGGCAG	.	PASS	Atlas-SNP
PLCE1	51196	hgsc.bcm.edu	37	10	95791436	95791436	+	Silent	SNP	C	C	T	rs201117145	bycluster;by1000genomes	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	100.0	33.0	98.0	0.0	0.33	0	C|1.000;T|0.000	0.000	strong	.	PLCE1	543	.	NM_016341	exon2	c.C633T	p.D211D	TTTAGACGATTGT	.	PASS	Atlas-SNP
RAB11FIP1	80223	hgsc.bcm.edu	37	8	37729420	37729420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	103.0	7.0	113.0	0.0	0.0679612	0	.	.	none	.	RAB11FIP1	105	.	NM_001002814	exon4	c.C2900T	p.S967L	TCATCCGATGCGA	.	PASS	Atlas-SNP
MBL2	4153	hgsc.bcm.edu	37	10	54527908	54527908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	101.0	21.0	117.0	0.0	0.207921	0	.	.	none	.	MBL2	55	.	NM_000242	exon4	c.T736G	p.F246V	TAGGGAACTCACA	.	PASS	Atlas-SNP
SLC26A3	1811	hgsc.bcm.edu	37	7	107408040	107408040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	156.0	40.0	176.0	0.0	0.25641	0	.	.	none	SLC26A3,NS,carcinoma,0,4	SLC26A3	120	4	NM_000111	exon20	c.G2255A	p.R752H	CGATTACGTAATC	.	PASS	Atlas-SNP
AMOT	154796	hgsc.bcm.edu	37	X	112065819	112065819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	83.0	40.0	105.0	0.0	0.481928	0	.	.	none	.	AMOT	204	.	NM_001113490	exon1	c.T536C	p.M179T	ATCTGCATTAGTC	.	PASS	Atlas-SNP
HUNK	30811	hgsc.bcm.edu	37	21	33371069	33371069	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	88.0	33.0	85.0	0.0	0.375	0	.	.	none	.	HUNK	74	.	NM_014586	exon11	c.G1717A	p.V573M	GTAGAAGTGCTGT	.	PASS	Atlas-SNP
ASXL3	80816	hgsc.bcm.edu	37	18	31250736	31250736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	154.0	31.0	110.0	0.0	0.201299	0	.	.	none	.	ASXL3	405	.	NM_030632	exon6	c.C577A	p.Q193K	GATGAGCAGTCGG	.	PASS	Atlas-SNP
MLL	4297	hgsc.bcm.edu	37	11	118372519	118372519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	86.0	29.0	103.0	0.0	0.337209	0	.	.	none	.	MLL	548	.	NM_001197104	exon26	c.C6452T	p.P2151L	GAACACCCAGTTA	.	PASS	Atlas-SNP
ADAMTS13	11093	hgsc.bcm.edu	37	9	136310909	136310909	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	51.0	7.0	88.0	0.0	0.137255	0	.	.	none	.	ADAMTS13	113	.	NM_139027	exon21	c.G2700A	p.A900A	CCCTGCGGCAGGG	.	PASS	Atlas-SNP
SLC4A4	8671	hgsc.bcm.edu	37	4	72338528	72338528	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	161.0	44.0	173.0	0.0	0.273292	0	.	.	none	.	SLC4A4	269	.	NM_001098484	exon14	c.C1744T	p.R582C	TTCACACGTTTCA	.	PASS	Atlas-SNP
ATP2A3	489	hgsc.bcm.edu	37	17	3844340	3844340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	44.0	25.0	82.0	0.0	0.568182	0	.	.	none	.	ATP2A3	148	.	NM_174956	exon14	c.C2025G	p.C675W	GGCGAAGCAGCGG	.	PASS	Atlas-SNP
KLHL36	79786	hgsc.bcm.edu	37	16	84691156	84691156	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	43.0	4.0	39.0	0.0	0.0930233	0	.	.	none	.	KLHL36	51	.	NM_024731	exon3	c.G743A	p.R248H	TGCACCGCGTCAA	.	PASS	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	37	11	121414264	121414264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	103.0	30.0	93.0	0.0	0.291262	0	.	.	none	.	SORL1	218	.	NM_003105	exon13	c.A1693C	p.T565P	TACAGTACCAATG	.	PASS	Atlas-SNP
ZNF236	7776	hgsc.bcm.edu	37	18	74606988	74606988	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	53.0	23.0	40.0	0.0	0.433962	0	.	.	none	.	ZNF236	325	.	NM_007345	exon10	c.C1431T	p.N477N	GGAGAACGGCGTG	.	PASS	Atlas-SNP
OR10G8	219869	hgsc.bcm.edu	37	11	123900714	123900714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	315.0	81.0	263.0	0.0	0.257143	0	.	.	none	.	OR10G8	132	.	NM_001004464	exon1	c.C385A	p.L129I	TACCCGCTCAGGT	.	PASS	Atlas-SNP
HOXC11	3227	hgsc.bcm.edu	37	12	54367692	54367692	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	22.0	7.0	31.0	0.0	0.318182	0	.	.	none	.	HOXC11	32	.	NM_014212	exon1	c.A667T	p.K223X	CCGGCCAAAGGAG	.	PASS	Atlas-SNP
LIPT2	387787	hgsc.bcm.edu	37	11	74204727	74204727	+	Silent	SNP	A	A	G	rs4944895	bycluster;byhapmap;by1000genomes	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	6.0	6.0	0.0	0.0	1	.	A|0.071;G|0.929	0.929	strong	.	LIPT2	5	.	NM_001144869	exon1	c.T22C	p.L8L	GCACCAACCGAAC	.	PASS	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22181246	22181246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	80.0	33.0	112.0	0.0	0.4125	0	.	.	none	.	HSPG2	311	.	NM_005529	exon49	c.G6146A	p.S2049N	GGTGGGCTGGCAT	.	PASS	Atlas-SNP
ALPK2	115701	hgsc.bcm.edu	37	18	56246643	56246643	+	Silent	SNP	G	G	T	rs373786602	alternate_allele	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	270.0	59.0	201.0	0.0	0.218519	0	.	.	alt	ALPK2_ENST00000361673,medulla,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ALPK2	487	1	NM_052947	exon4	c.C1365A	p.P455P	AGCCTCGGGAGCA	.	PASS	Atlas-SNP
NTSR1	4923	hgsc.bcm.edu	37	20	61386045	61386045	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	40.0	4.0	42.0	0.0	0.1	0	.	.	none	.	NTSR1	59	.	NM_002531	exon2	c.C723T	p.T241T	CAACACCTTCATG	.	PASS	Atlas-SNP
PCDHA4	56144	hgsc.bcm.edu	37	5	140188702	140188702	+	Missense_Mutation	SNP	C	C	T	rs142688560	bycluster;byfrequency	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	82.0	6.0	93.0	0.0	0.0731707	0	C|0.998;T|0.002	0.002	strong	PCDHA4_ENST00000530339,NS,carcinoma,-1,2	PCDHA4	419	2	NM_031500	exon1	c.C1930T	p.R644C	GCTCCGCGCCACC	.	PASS	Atlas-SNP
MED29	55588	hgsc.bcm.edu	37	19	39884260	39884260	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	54.0	11.0	55.0	0.0	0.203704	0	.	.	none	.	MED29	13	.	NM_017592	exon3	c.C406T	p.Q136X	TGTGACCAGCTGG	.	PASS	Atlas-SNP
ENO1	2023	hgsc.bcm.edu	37	1	8927286	8927286	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	69.0	12.0	72.0	0.0	0.173913	0	.	.	none	.	ENO1	38	.	NM_001428	exon6	c.C334G	p.L112V	CCCCCAGAATGGC	.	PASS	Atlas-SNP
MITF	4286	hgsc.bcm.edu	37	3	69988253	69988253	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	201.0	54.0	225.0	0.0	0.268657	0	.	.	none	.	MITF	156	.	NM_198159	exon4	c.T587G	p.F196C	AGGGATTTTATAA	.	PASS	Atlas-SNP
C5orf42	65250	hgsc.bcm.edu	37	5	37169527	37169527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	151.0	31.0	129.0	0.0	0.205298	0	.	.	none	.	C5orf42	422	.	NM_023073	exon34	c.T6599C	p.L2200S	GTGGACAAAAGGT	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230400	23230400	+	Missense_Mutation	SNP	T	T	C	rs189360394	by1000genomes	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	97.0	29.0	105.0	0.0	0.298969	0	T|1.000;C|0.000	0.000	strong	.	IGLL5	26	.	NM_001178126	exon1	c.T167C	p.V56A	CCTCAGTTGGAAG	.	PASS	Atlas-SNP
EGFL7	51162	hgsc.bcm.edu	37	9	139566493	139566493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	37.0	10.0	48.0	0.0	0.27027	0	.	.	none	.	EGFL7	11	.	NM_016215	exon10	c.A752C	p.D251A	GCATCGACTCCCT	.	PASS	Atlas-SNP
ESRRG	2104	hgsc.bcm.edu	37	1	216680465	216680465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	171.0	52.0	226.0	0.0	0.304094	0	.	.	none	.	ESRRG	111	.	NM_001243518	exon8	c.C1229A	p.A410E	TGCAGCGCTTCAT	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	37	4	126328261	126328261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	126.0	31.0	124.0	1.0	0.246032	0.00806452	.	.	none	FAT4_ENST00000394329,NS,carcinoma,-1,4	FAT4	1752	4	NM_024582	exon3	c.T5534C	p.V1845A	GACCCGTGTACTC	.	scavenged	Atlas-SNP
RCVRN	5957	hgsc.bcm.edu	37	17	9804381	9804381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	70.0	33.0	96.0	0.0	0.471429	0	.	.	none	.	RCVRN	34	.	NM_002903	exon2	c.C418A	p.L140I	GAAGGAGCTTCAC	.	PASS	Atlas-SNP
KIAA0226	9711	hgsc.bcm.edu	37	3	197409444	197409444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	101.0	31.0	129.0	0.0	0.306931	0	.	.	none	KIAA0226_ENST00000273582,NS,carcinoma,0,2	KIAA0226	136	2	NM_014687	exon14	c.G2023A	p.G675R	GCTGCCCGTCATC	.	PASS	Atlas-SNP
STK36	27148	hgsc.bcm.edu	37	2	219538411	219538411	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	97.0	41.0	111.0	0.0	0.42268	0	.	.	none	.	STK36	111	.	NM_015690	exon3	c.C148T	p.R50X	TTGCAACGAGAGA	.	PASS	Atlas-SNP
THSD7A	221981	hgsc.bcm.edu	37	7	11418733	11418733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	288.0	110.0	244.0	0.0	0.381944	0	.	.	none	THSD7A,NS,carcinoma,+2,1	THSD7A	219	1	NM_015204	exon25	c.C4765T	p.R1589W	TTCCCCGTCCTGC	.	PASS	Atlas-SNP
CDH4	1002	hgsc.bcm.edu	37	20	60427861	60427861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	59.0	19.0	44.0	0.0	0.322034	0	.	.	none	.	CDH4	172	.	NM_001794	exon6	c.G784A	p.D262N	CCCATCGACCTGT	.	PASS	Atlas-SNP
XYLT2	64132	hgsc.bcm.edu	37	17	48431146	48431146	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	40.0	16.0	44.0	0.0	0.4	0	.	.	none	.	XYLT2	51	.	NM_022167	exon2	c.G291A	p.R97R	GGTACGGGCAGTA	.	PASS	Atlas-SNP
C19orf40	91442	hgsc.bcm.edu	37	19	33465059	33465059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	179.0	27.0	99.0	0.0	0.150838	0	.	.	none	.	C19orf40	21	.	NM_152266	exon4	c.G337A	p.G113R	GACCTTGGAATGG	.	PASS	Atlas-SNP
TNPO1	3842	hgsc.bcm.edu	37	5	72173116	72173116	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	116.0	37.0	107.0	0.0	0.318966	0	.	.	none	.	TNPO1	90	.	NM_002270	exon9	c.G863A	p.W288X	AATTTTGGCTAAC	.	PASS	Atlas-SNP
PRICKLE2	166336	hgsc.bcm.edu	37	3	64148736	64148736	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	134.0	47.0	146.0	0.0	0.350746	0	.	.	none	PRICKLE2,NS,carcinoma,0,1	PRICKLE2	88	1	NM_198859	exon3	c.C214T	p.R72X	TGATTCGCAGTTT	.	PASS	Atlas-SNP
ADAT1	23536	hgsc.bcm.edu	37	16	75646759	75646759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	121.0	15.0	119.0	0.0	0.123967	0	.	.	none	.	ADAT1	45	.	NM_012091	exon7	c.G425A	p.C142Y	TCCCCACCTGCAG	.	PASS	Atlas-SNP
CCL2	6347	hgsc.bcm.edu	37	17	32583751	32583751	+	Missense_Mutation	SNP	A	A	T	rs148285031	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	91.0	12.0	90.0	0.0	0.131868	0	A|0.999;G|0.001	.	alt	.	CCL2	10	.	NM_002982	exon3	c.A205T	p.I69F	AAGACCATTGTGG	.	PASS	Atlas-SNP
LATS2	26524	hgsc.bcm.edu	37	13	21562181	21562181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	385.0	96.0	450.0	1.0	0.249351	0.00222222	.	.	none	.	LATS2	176	.	NM_014572	exon4	c.G1738A	p.V580I	TGCGGACGGGAAC	.	PASS	Atlas-SNP
PCDHA8	56140	hgsc.bcm.edu	37	5	140222523	140222523	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	67.0	24.0	71.0	0.0	0.358209	0	.	.	none	.	PCDHA8	366	.	NM_031856	exon1	c.C1617T	p.D539D	GCGCGACGCGGGC	.	PASS	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	37	11	93819329	93819329	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	71.0	7.0	68.0	0.0	0.0985916	0	.	.	none	.	HEPHL1	144	.	NM_001098672	exon11	c.C2054G	p.T685R	CCACAACAGCATT	.	PASS	Atlas-SNP
HRH1	3269	hgsc.bcm.edu	37	3	11302022	11302022	+	Silent	SNP	C	C	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	97.0	26.0	84.0	0.0	0.268041	0	.	.	none	HRH1,NS,lymphoid_neoplasm,+1,1	HRH1	58	1	NM_000861	exon3	c.C1299A	p.I433I	TTTCATCTTCTTC	.	PASS	Atlas-SNP
WIPI1	55062	hgsc.bcm.edu	37	17	66423340	66423340	+	Silent	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	108.0	5.0	121.0	0.0	0.0462963	0	.	.	none	.	WIPI1	46	.	NM_017983	exon11	c.C1128A	p.S376S	AGGTAAGGAAGGT	.	PASS	Atlas-SNP
HNRNPD	3184	hgsc.bcm.edu	37	4	83294683	83294683	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	60.0	18.0	67.0	0.0	0.3	0	.	.	none	.	HNRNPD	23	.	NM_031370	exon1	c.G149A	p.G50E	GCGGTTCCGCCCC	.	PASS	Atlas-SNP
LRP1B	53353	hgsc.bcm.edu	37	2	141571231	141571231	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	211.0	26.0	239.0	0.0	0.123223	0	.	.	none	.	LRP1B	1315	.	NM_018557	exon32	c.T5354C	p.I1785T	CCCATGATGGTTA	.	PASS	Atlas-SNP
EPHX1	2052	hgsc.bcm.edu	37	1	226016540	226016540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	109.0	29.0	116.0	0.0	0.266055	0	.	.	none	.	EPHX1	57	.	NM_001136018	exon2	c.G110T	p.G37V	GGCCAGGCACGAG	.	PASS	Atlas-SNP
PPM1H	57460	hgsc.bcm.edu	37	12	63328431	63328431	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	77.0	27.0	76.0	0.0	0.350649	0	.	.	none	.	PPM1H	42	.	NM_020700	exon1	c.G86A	p.S29N	CCGCAGCTGCCGC	.	PASS	Atlas-SNP
DTX1	1840	hgsc.bcm.edu	37	12	113496147	113496147	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	59.0	9.0	66.0	0.0	0.152542	0	.	.	none	.	DTX1	83	.	NM_004416	exon1	c.C150T	p.N50N	TGAGAACGTGCTG	.	PASS	Atlas-SNP
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651379	1651379	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	73.0	20.0	69.0	0.0	0.273973	0	.	.	none	.	KRTAP5-5	86	.	NM_001001480	exon1	c.G309A	p.G103G	CTGTGGGGTGTCC	.	PASS	Atlas-SNP
VEGFB	7423	hgsc.bcm.edu	37	11	64004667	64004667	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	72.0	23.0	93.0	0.0	0.319444	0	.	.	none	VEGFB,NS,carcinoma,+1,2	VEGFB	18	2	NM_003377	exon5	c.A383G	p.K128R	CTAAAAAAAAGGA	.	PASS	Atlas-SNP
MLC1	23209	hgsc.bcm.edu	37	22	50521550	50521550	+	Missense_Mutation	SNP	G	G	A	rs145484765	bycluster	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	50.0	15.0	37.0	0.0	0.3	0	G|1.000;A|0.000	0.000	weak	.	MLC1	48	.	NM_015166	exon3	c.C230T	p.P77L	TCAGCCGGGAACA	.	PASS	Atlas-SNP
UNC5D	137970	hgsc.bcm.edu	37	8	35624423	35624423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	63.0	14.0	63.0	0.0	0.222222	0	.	.	none	.	UNC5D	393	.	NM_080872	exon15	c.G2317A	p.V773I	CAGGAAGTCCCGT	.	PASS	Atlas-SNP
MUC4	4585	hgsc.bcm.edu	37	3	195506458	195506458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	20.0	3.0	15.0	1.0	0.15	0.0666667	.	.	none	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	1505	2	NM_018406	exon2	c.C11993T	p.A3998V	GGGGTGGCGTGAC	.	scavenged	Atlas-SNP
GRHPR	9380	hgsc.bcm.edu	37	9	37424891	37424891	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	45.0	9.0	59.0	0.0	0.2	0	.	.	none	.	GRHPR	35	.	NM_012203	exon2	c.C133G	p.L45V	AAGGAGCTAGAGC	.	PASS	Atlas-SNP
FAM5C	339479	hgsc.bcm.edu	37	1	190423955	190423955	+	Silent	SNP	T	T	C	rs190123682	bycluster;by1000genomes;alternate_allele	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	94.0	29.0	100.0	0.0	0.308511	0	T|0.999;G|0.001	.	alt	.	FAM5C	343	.	NM_199051	exon2	c.A66G	p.A22A	ACTCAGTGCTATC	.	PASS	Atlas-SNP
MMP2	4313	hgsc.bcm.edu	37	16	55518022	55518022	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	123.0	56.0	117.0	0.0	0.455285	0	.	.	none	MMP2,NS,carcinoma,-1,1	MMP2	119	1	NM_004530	exon3	c.T475G	p.F159V	CTGCGGTTTTCTC	.	PASS	Atlas-SNP
RASEF	158158	hgsc.bcm.edu	37	9	85597645	85597645	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	216.0	54.0	303.0	0.0	0.25	0	.	.	none	.	RASEF	69	.	NM_152573	exon17	c.A2170T	p.T724S	TCCCGGTTAGATT	.	PASS	Atlas-SNP
MGAT5B	146664	hgsc.bcm.edu	37	17	74922752	74922752	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	25.0	9.0	28.0	0.0	0.36	0	.	.	none	.	MGAT5B	98	.	NM_198955	exon9	c.G1264A	p.G422S	CTGCACGGCTACC	.	PASS	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	37	4	143129658	143129658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	206.0	30.0	220.0	0.0	0.145631	0	.	.	none	INPP4B,NS,carcinoma,-1,1	INPP4B	132	1	NM_003866	exon15	c.G992A	p.S331N	CCTTTGCTGCTGC	.	PASS	Atlas-SNP
PCDHA1	56147	hgsc.bcm.edu	37	5	140167650	140167650	+	Missense_Mutation	SNP	C	C	T	rs190769137	by1000genomes;alternate_allele	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	139.0	46.0	130.0	0.0	0.330935	0	C|1.000;G|0.000	.	alt	PCDHA1_ENST00000504120,NS,carcinoma,+1,2	PCDHA1	387	2	NM_031410	exon1	c.C1775T	p.A592V	TGGTGGCGAAGGT	.	PASS	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140811100	140811100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	90.0	14.0	94.0	0.0	0.155556	0	.	.	none	MAML3_ENST00000509479,caecum,carcinoma,+1,12	MAML3	192	12	NM_018717	exon2	c.A1490G	p.Q497R	TGCTGCTGCTGCT	.	PASS	Atlas-SNP
DES	1674	hgsc.bcm.edu	37	2	220283213	220283213	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	85.0	18.0	82.0	0.0	0.211765	0	.	.	none	.	DES	53	.	NM_001927	exon1	c.G29A	p.R10H	GCCAGCGCGTGTC	.	PASS	Atlas-SNP
ZMYM4	9202	hgsc.bcm.edu	37	1	35885121	35885121	+	Missense_Mutation	SNP	G	G	A	rs142484548	bycluster;by1000genomes	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	89.0	28.0	102.0	0.0	0.314607	0	G|1.000;A|0.000	0.000	strong	.	ZMYM4	143	.	NM_005095	exon30	c.G4490A	p.R1497H	CTGAGCGCTCCTG	.	PASS	Atlas-SNP
BEGAIN	57596	hgsc.bcm.edu	37	14	101005056	101005056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	625.0	37.0	147.0	0.0	0.0592	0	.	.	none	.	BEGAIN	32	.	NM_020836	exon7	c.G1032C	p.E344D	GCTGCCCTCGTAG	.	PASS	Atlas-SNP
OR6C75	390323	hgsc.bcm.edu	37	12	55759668	55759668	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	88.0	27.0	79.0	0.0	0.306818	0	.	.	none	.	OR6C75	67	.	NM_001005497	exon1	c.T774G	p.I258M	GTACATTAAGACT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138804	37138804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	82.0	22.0	83.0	0.0	0.268293	0	.	.	none	PIM1,NS,lymphoid_neoplasm,0,4	PIM1	71	4	NM_001243186	exon3	c.G510T	p.E170D	GGGAGAGCTGGTG	.	PASS	Atlas-SNP
AP1M1	8907	hgsc.bcm.edu	37	19	16319908	16319908	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	98.0	26.0	109.0	0.0	0.265306	0	.	.	none	.	AP1M1	48	.	NM_001130524	exon5	c.G466A	p.A156T	ACCAACGCGGTGT	.	PASS	Atlas-SNP
NFKBIA	4792	hgsc.bcm.edu	37	14	35873697	35873697	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	55.0	18.0	74.0	0.0	0.327273	0	.	.	none	.	NFKBIA	28	.	NM_020529	exon1	c.A154T	p.I52F	GGCGGATCTCCTG	.	PASS	Atlas-SNP
ASTN2	23245	hgsc.bcm.edu	37	9	120053673	120053673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	102.0	30.0	108.0	0.0	0.294118	0	.	.	none	.	ASTN2	307	.	NM_014010	exon2	c.G562A	p.A188T	TGGGGGCGGTGGC	.	PASS	Atlas-SNP
HNF4G	3174	hgsc.bcm.edu	37	8	76463645	76463645	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	49.0	9.0	70.0	0.0	0.183673	0	.	.	none	.	HNF4G	111	.	NM_004133	exon4	c.A375C	p.R125S	TGACAGAATAAGC	.	PASS	Atlas-SNP
CNTN1	1272	hgsc.bcm.edu	37	12	41316167	41316167	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	121.0	17.0	110.0	0.0	0.140496	0	.	.	none	.	CNTN1	207	.	NM_001256063	exon5	c.T337A	p.Y113N	ATATACTACTGTT	.	PASS	Atlas-SNP
PDZRN3	23024	hgsc.bcm.edu	37	3	73433731	73433731	+	Silent	SNP	G	G	A	rs142044798		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	71.0	28.0	83.0	0.0	0.394366	0	G|1.000;A|0.000	0.000	weak	.	PDZRN3	196	.	NM_015009	exon10	c.C1986T	p.Y662Y	CAGGCCGTAAGGG	.	PASS	Atlas-SNP
MAB21L2	10586	hgsc.bcm.edu	37	4	151504768	151504768	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	34.0	10.0	45.0	0.0	0.294118	0	.	.	none	.	MAB21L2	53	.	NM_006439	exon1	c.G587A	p.G196D	GGCCCGGCCCCAA	.	PASS	Atlas-SNP
ZNF347	84671	hgsc.bcm.edu	37	19	53643815	53643815	+	Missense_Mutation	SNP	G	G	A	rs142427199	bycluster;byfrequency	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	108.0	29.0	157.0	0.0	0.268519	0	G|0.997;A|0.003	0.003	strong	ZNF347,caecum,carcinoma,0,2	ZNF347	87	2	NM_001172675	exon5	c.C2269T	p.R757W	TTCCCCGATGTCT	.	PASS	Atlas-SNP
P2RX5	5026	hgsc.bcm.edu	37	17	3599171	3599171	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	60.0	33.0	97.0	0.0	0.55	0	.	.	none	.	P2RX5	36	.	NM_001204519	exon1	c.C129A	p.Y43X	GACCAGGTACGCC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230295	23230295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	111.0	33.0	146.0	0.0	0.297297	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.G62C	p.R21T	GTCCCAGGCAGCG	.	PASS	Atlas-SNP
KIF6	221458	hgsc.bcm.edu	37	6	39563864	39563864	+	Missense_Mutation	SNP	T	T	G	rs150066437	alternate_allele	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	207.0	71.0	138.0	0.0	0.342995	0	T|1.000;C|0.000	.	alt	.	KIF6	233	.	NM_145027	exon7	c.A812C	p.K271T	ATATACTTGGCCT	.	PASS	Atlas-SNP
MTUS1	57509	hgsc.bcm.edu	37	8	17611707	17611707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	196.0	59.0	210.0	0.0	0.30102	0	.	.	none	MTUS1,colon,carcinoma,0,3	MTUS1	144	3	NM_001001924	exon2	c.C1610A	p.T537N	GCACTGGTCTGCT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138937	37138937	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	73.0	15.0	54.0	0.0	0.205479	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.C550T	p.L184L	GTCCTGCTGAAGA	.	PASS	Atlas-SNP
TMEM206	55248	hgsc.bcm.edu	37	1	212558714	212558714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	97.0	29.0	130.0	0.0	0.298969	0	.	.	none	.	TMEM206	41	.	NM_001198862	exon5	c.G580A	p.E194K	TGACCTCGTAATG	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203274836	203274836	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	72.0	17.0	103.0	0.0	0.236111	0	.	.	none	.	BTG2	16	.	NM_006763	exon1	c.G102C	p.R34S	GCAGAGGCTTAAG	.	PASS	Atlas-SNP
TRIM11	81559	hgsc.bcm.edu	37	1	228594049	228594049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	29.0	10.0	39.0	0.0	0.344828	0	.	.	none	.	TRIM11	38	.	NM_145214	exon1	c.G214A	p.A72T	TCTTAGCAAGCGG	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	37	1	144852401	144852401	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	71.0	7.0	84.0	0.0	0.0985916	0	.	.	none	.	PDE4DIP	817	.	NM_001198834	exon44	c.C7042T	p.Q2348X	TTTCCTGCTGTTT	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230348	23230348	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	95.0	32.0	128.0	0.0	0.336842	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.C115T	p.L39L	GGCCTGCTGCGCC	.	PASS	Atlas-SNP
ABCF1	23	hgsc.bcm.edu	37	6	30553422	30553422	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	57.0	20.0	42.0	0.0	0.350877	0	.	.	none	.	ABCF1	61	.	NM_001025091	exon16	c.C1563T	p.L521L	CCACCTCGATGCC	.	PASS	Atlas-SNP
TWIST2	117581	hgsc.bcm.edu	37	2	239757191	239757191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	27.0	8.0	23.0	0.0	0.296296	0	.	.	none	.	TWIST2	6	.	NM_057179	exon1	c.G335A	p.R112K	CCGCCAGGTACAT	.	PASS	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	G	A	rs121913343	bycluster	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	56.0	28.0	71.0	0.0	0.5	0	.	.	weak	TP53_ENST00000455263,NS,adenocarcinoma,+1,1300	TP53	33396	1300	NM_000546	exon8	c.C817T	p.R273C	AAACACGCACCTC	.	PASS	Atlas-SNP
HSPG2	3339	hgsc.bcm.edu	37	1	22181135	22181135	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	58.0	24.0	64.0	0.0	0.413793	0	.	.	none	.	HSPG2	311	.	NM_005529	exon49	c.G6257C	p.R2086T	CCTCGCCTGTACC	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1258387	1258387	+	Missense_Mutation	SNP	G	G	A	rs202160055		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	26.0	7.0	15.0	1.0	0.269231	0.0666667	.	.	weak	MUC5B,NS,carcinoma,+1,4	MUC5B	473	4	NM_002458	exon25	c.G3290A	p.R1097H	CCTGCCGCTCCCA	.	scavenged	Atlas-SNP
ND5	0	hgsc.bcm.edu	37	MT	12519	12519	+	Silent	SNP	T	T	C	rs72553855		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	20.0	6.0	28.0	0.0	0.3	0	.	.	weak	.	.	.	.	ENST00000361567	exon1	c.T183C	p.V61V	AGAAGTTATTATC	.	PASS	Atlas-SNP
EIF3E	3646	hgsc.bcm.edu	37	8	109215229	109215229	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	115.0	41.0	131.0	0.0	0.356522	0	.	.	none	EIF3E,NS,carcinoma,0,3	EIF3E	73	3	NM_001568	exon12	c.C1282T	p.Q428X	TATTCTGATTAAG	.	PASS	Atlas-SNP
EXOC3L4	91828	hgsc.bcm.edu	37	14	103570659	103570659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	54.0	30.0	97.0	0.0	0.555556	0	.	.	none	.	EXOC3L4	35	.	NM_001077594	exon4	c.C1217T	p.A406V	ACTGGGCGGCCGC	.	PASS	Atlas-SNP
FKBP6	8468	hgsc.bcm.edu	37	7	72743416	72743416	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	96.0	32.0	118.0	0.0	0.333333	0	.	.	none	.	FKBP6	35	.	NM_003602	exon3	c.T229G	p.F77V	AATTACTTTAGGA	.	PASS	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	37	4	143235864	143235864	+	Splice_Site	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	116.0	44.0	121.0	0.0	0.37931	0	.	.	none	.	INPP4B	132	.	NM_003866	exon10	c.423+1G>A	.	CACTTACCCCAAC	.	PASS	Atlas-SNP
LONRF2	164832	hgsc.bcm.edu	37	2	100916227	100916227	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	126.0	40.0	149.0	0.0	0.31746	0	.	.	none	.	LONRF2	62	.	NM_198461	exon5	c.G1219A	p.V407M	CCTCCACGTCATC	.	PASS	Atlas-SNP
SEMA3D	223117	hgsc.bcm.edu	37	7	84685039	84685039	+	Silent	SNP	A	A	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	49.0	19.0	46.0	0.0	0.387755	0	.	.	none	.	SEMA3D	177	.	NM_152754	exon7	c.T855C	p.V285V	CTTACAAACTCTT	.	PASS	Atlas-SNP
RAN	5901	hgsc.bcm.edu	37	12	131359242	131359242	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	81.0	18.0	107.0	0.0	0.222222	0	.	.	none	.	RAN	18	.	NM_006325	exon5	c.G399A	p.A133A	GAAGGCGAAATCC	.	PASS	Atlas-SNP
MPPED1	758	hgsc.bcm.edu	37	22	43870785	43870785	+	Silent	SNP	C	C	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	85.0	24.0	105.0	0.0	0.282353	0	.	.	none	.	MPPED1	59	.	NM_001044370	exon4	c.C576A	p.I192I	CTGCATCTACCTT	.	PASS	Atlas-SNP
EPHB4	2050	hgsc.bcm.edu	37	7	100420197	100420197	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	86.0	18.0	110.0	0.0	0.209302	0	.	.	none	.	EPHB4	106	.	NM_004444	exon4	c.G504A	p.P168P	GCTGAGCGGTCCC	.	PASS	Atlas-SNP
KLHL14	57565	hgsc.bcm.edu	37	18	30350108	30350108	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	159.0	82.0	112.0	0.0	0.515723	0	.	.	none	.	KLHL14	92	.	NM_020805	exon2	c.G447A	p.L149L	CAGGGACAGGGTC	.	PASS	Atlas-SNP
ZNF276	92822	hgsc.bcm.edu	37	16	89790056	89790056	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	80.0	23.0	58.0	0.0	0.2875	0	.	.	none	ZNF276_ENST00000443381,NS,carcinoma,0,2	ZNF276	70	2	NM_001113525	exon4	c.C945T	p.D315D	CAGCGACGCGGTG	.	PASS	Atlas-SNP
MON2	23041	hgsc.bcm.edu	37	12	62936884	62936884	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	122.0	42.0	129.0	0.0	0.344262	0	.	.	none	.	MON2	160	.	NM_015026	exon20	c.C2372G	p.S791C	AACCATCTCTTTT	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	37	7	82583245	82583245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	195.0	23.0	195.0	0.0	0.117949	0	.	.	none	.	PCLO	1506	.	NM_014510	exon5	c.C7024A	p.H2342N	GTGGGTGATCAAA	.	PASS	Atlas-SNP
CCDC17	149483	hgsc.bcm.edu	37	1	46088711	46088711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	71.0	15.0	66.0	0.0	0.211268	0	.	.	none	.	CCDC17	54	.	NM_001114938	exon4	c.G572A	p.R191Q	AGTTCTCGAATCT	.	PASS	Atlas-SNP
ALDOC	230	hgsc.bcm.edu	37	17	26901736	26901736	+	Missense_Mutation	SNP	C	C	T	rs148239543		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	59.0	4.0	49.0	0.0	0.0677966	0	C|1.000;T|0.000	0.000	weak	ALDOC,colon,carcinoma,-1,1	ALDOC	22	1	NM_005165	exon5	c.G518A	p.R173H	GCATAACGGGCCA	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203274810	203274810	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	89.0	24.0	105.0	0.0	0.269663	0	.	.	none	.	BTG2	16	.	NM_006763	exon1	c.A76C	p.T26P	CTGAGGACCCGGG	.	PASS	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	37	4	74005713	74005713	+	Nonsense_Mutation	SNP	G	G	A	rs148961166	alternate_allele	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	464.0	131.0	536.0	0.0	0.282328	0	G|1.000;T|0.000	.	alt	.	ANKRD17	214	.	NM_032217	exon15	c.C2620T	p.R874X	ACTCTCGTTCTAC	.	PASS	Atlas-SNP
KDM6A	7403	hgsc.bcm.edu	37	X	44942730	44942730	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	200.0	113.0	356.0	0.0	0.565	0	.	.	none	.	KDM6A	274	.	NM_021140	exon23	c.A3310C	p.T1104P	GAGCTGACTAAAC	.	PASS	Atlas-SNP
BEGAIN	57596	hgsc.bcm.edu	37	14	101004957	101004957	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	334.0	28.0	86.0	0.0	0.0838323	0	.	.	none	.	BEGAIN	32	.	NM_020836	exon7	c.C1131T	p.A377A	GGTCTCGGCCGGG	.	PASS	Atlas-SNP
NACC2	138151	hgsc.bcm.edu	37	9	138903497	138903497	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	34.0	12.0	27.0	0.0	0.352941	0	.	.	none	.	NACC2	16	.	NM_144653	exon6	c.C1629T	p.A543A	GGGGGCGGCCACC	.	PASS	Atlas-SNP
ARAP2	116984	hgsc.bcm.edu	37	4	36069898	36069898	+	Silent	SNP	A	A	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	57.0	8.0	67.0	0.0	0.140351	0	.	.	none	.	ARAP2	210	.	NM_015230	exon33	c.T4746C	p.S1582S	TCTTGCACTCTAA	.	PASS	Atlas-SNP
SPATA31E1	286234	hgsc.bcm.edu	37	9	90502053	90502053	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	37.0	11.0	49.0	0.0	0.297297	0	.	.	none	C9orf79,NS,carcinoma,-1,1	.	.	1	NM_178828	exon4	c.G2651T	p.R884L	TATCTCGGGTTGA	.	PASS	Atlas-SNP
PRKCD	5580	hgsc.bcm.edu	37	3	53221396	53221396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	113.0	42.0	119.0	0.0	0.371681	0	.	.	none	.	PRKCD	124	.	NM_212539	exon14	c.C1393T	p.H465Y	TTTCTACACAGCA	.	PASS	Atlas-SNP
FAM211A	388341	hgsc.bcm.edu	37	17	16351219	16351219	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	52.0	27.0	69.0	0.0	0.519231	0	.	.	none	.	FAM211A	21	.	NM_001113567	exon3	c.T431G	p.L144R	GGGCTGAGGTGGT	.	PASS	Atlas-SNP
OR51B6	390058	hgsc.bcm.edu	37	11	5372968	5372968	+	Silent	SNP	C	C	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	127.0	56.0	122.0	0.0	0.440945	0	.	.	none	.	OR51B6	53	.	NM_001004750	exon1	c.C231A	p.P77P	AATGCCCACAGTG	.	PASS	Atlas-SNP
C7orf65	401335	hgsc.bcm.edu	37	7	47694914	47694914	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	197.0	18.0	196.0	0.0	0.0913706	0	.	.	none	.	C7orf65	18	.	NM_001123065	exon1	c.G38A	p.R13Q	GAAGACGGCTCTG	.	PASS	Atlas-SNP
NINL	22981	hgsc.bcm.edu	37	20	25462663	25462663	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	24.0	9.0	18.0	0.0	0.375	0	.	.	none	.	NINL	148	.	NM_025176	exon14	c.A1751T	p.H584L	GGGCTGTGCCGGT	.	PASS	Atlas-SNP
NID1	4811	hgsc.bcm.edu	37	1	236156994	236156994	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	89.0	34.0	94.0	0.0	0.382022	0	.	.	none	.	NID1	196	.	NM_002508	exon13	c.C2706T	p.D902D	GCGGCCGTCGCGA	.	PASS	Atlas-SNP
ARHGAP20	57569	hgsc.bcm.edu	37	11	110582853	110582853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	33.0	12.0	35.0	1.0	0.363636	0.0285714	.	.	none	ARHGAP20,brain,primitive_neuroectodermal_tumour-medulloblastoma,-1,1	ARHGAP20	150	1	NM_020809	exon2	c.G102C	p.K34N	CACCTTCTTGGTG	.	scavenged	Atlas-SNP
ROBO1	6091	hgsc.bcm.edu	37	3	78711223	78711223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	125.0	19.0	110.0	0.0	0.152	0	.	.	none	.	ROBO1	833	.	NM_002941	exon15	c.C2008A	p.Q670K	CTCTCTGGACCTG	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37139087	37139087	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	104.0	41.0	112.0	2.0	0.394231	0.0178571	.	.	none	PIM1,NS,lymphoid_neoplasm,0,1	PIM1	71	1	NM_001243186	exon4	c.C700G	p.L234V	GAGGAGCTGGCCC	.	scavenged	Atlas-SNP
TSHZ1	10194	hgsc.bcm.edu	37	18	72998479	72998479	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	99.0	12.0	73.0	0.0	0.121212	0	.	.	none	.	TSHZ1	104	.	NM_005786	exon2	c.G982C	p.E328Q	GCCGCAGAGGTGG	.	PASS	Atlas-SNP
TET2	54790	hgsc.bcm.edu	37	4	106155165	106155165	+	Silent	SNP	T	T	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	54.0	14.0	53.0	0.0	0.259259	0	.	.	none	TET2,NS,haematopoietic_neoplasm,+1,1	TET2	1762	1	NM_001127208	exon3	c.T66G	p.P22P	ATCACCTCCCATT	.	PASS	Atlas-SNP
TUSC2	11334	hgsc.bcm.edu	37	3	50365502	50365502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	24.0	12.0	15.0	0.0	0.5	0	.	.	none	.	TUSC2	4	.	NM_007275	exon1	c.G29A	p.G10D	CACAGGCCCCGAG	.	PASS	Atlas-SNP
IMPG1	3617	hgsc.bcm.edu	37	6	76713610	76713610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	60.0	15.0	51.0	0.0	0.25	0	.	.	none	.	IMPG1	143	.	NM_001563	exon11	c.C1193A	p.S398Y	GCAAAAGATGTGG	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203276238	203276238	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	51.0	9.0	75.0	0.0	0.176471	0	.	.	none	.	BTG2	16	.	NM_006763	exon2	c.A149G	p.Y50C	AGCACTACAAACA	.	PASS	Atlas-SNP
GFPT1	2673	hgsc.bcm.edu	37	2	69565092	69565092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	100.0	32.0	144.0	0.0	0.32	0	.	.	none	.	GFPT1	38	.	NM_001244710	exon15	c.C1420T	p.R474W	TCTCCCGTGATAT	.	PASS	Atlas-SNP
OR52M1	119772	hgsc.bcm.edu	37	11	4566782	4566782	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	257.0	69.0	252.0	0.0	0.268482	0	.	.	none	OR52M1,NS,haematopoietic_neoplasm,+1,3	OR52M1	53	3	NM_001004137	exon1	c.C362G	p.A121G	CCATGGCTTTTGA	.	PASS	Atlas-SNP
ANKRD30A	91074	hgsc.bcm.edu	37	10	37490169	37490169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	620.0	79.0	644.0	0.0	0.127419	0	.	.	none	.	ANKRD30A	448	.	NM_052997	exon31	c.C2617T	p.R873C	AGTCTCCGTGAGA	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138423	37138423	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	92.0	26.0	61.0	0.0	0.282609	0	.	.	none	PIM1,NS,lymphoid_neoplasm,0,1	PIM1	71	1	NM_001243186	exon1	c.G345A	p.K115K	CACCAAGCTGGCG	.	PASS	Atlas-SNP
SMEK1	55671	hgsc.bcm.edu	37	14	91937274	91937274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	132.0	46.0	117.0	0.0	0.348485	0	.	.	none	.	SMEK1	94	.	NM_032560	exon11	c.C1528T	p.H510Y	AGGTATGGTGCTC	.	PASS	Atlas-SNP
RMND5B	64777	hgsc.bcm.edu	37	5	177565199	177565199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	142.0	44.0	136.0	0.0	0.309859	0	.	.	none	.	RMND5B	37	.	NM_022762	exon3	c.C79T	p.R27W	TGTGAGCGGAGCC	.	PASS	Atlas-SNP
KIF25	3834	hgsc.bcm.edu	37	6	168440827	168440827	+	Missense_Mutation	SNP	G	G	A	rs148907230	bycluster	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	49.0	14.0	41.0	0.0	0.285714	0	G|1.000;A|0.000	0.000	weak	.	KIF25	75	.	NM_030615	exon6	c.G577A	p.A193T	GTGCACGCGGATT	.	PASS	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	37	X	153039097	153039097	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	46.0	29.0	61.0	0.0	0.630435	0	.	.	none	.	PLXNB3	208	.	NM_001163257	exon20	c.C3277A	p.P1093T	CCACAGCCAAGGA	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138950	37138950	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	77.0	6.0	67.0	1.0	0.0779221	0.0149254	.	.	none	PIM1,NS,lymphoid_neoplasm,0,5	PIM1	71	5	NM_001243186	exon4	c.G563C	p.S188T	AGGTGAGCTCGGG	.	scavenged	Atlas-SNP
ARSE	415	hgsc.bcm.edu	37	X	2873470	2873470	+	Silent	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	117.0	55.0	159.0	0.0	0.470085	0	.	.	none	.	ARSE	43	.	NM_000047	exon4	c.C294T	p.Y98Y	CACAGGGTATCTG	.	PASS	Atlas-SNP
MMRN1	22915	hgsc.bcm.edu	37	4	90856769	90856769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	106.0	20.0	106.0	0.0	0.188679	0	.	.	none	.	MMRN1	174	.	NM_007351	exon6	c.G1938C	p.M646I	TGATATGGAGATC	.	PASS	Atlas-SNP
IDO2	169355	hgsc.bcm.edu	37	8	39872937	39872937	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	87.0	32.0	94.0	0.0	0.367816	0	.	.	none	.	IDO2	78	.	NM_194294	exon11	c.A1079T	p.H360L	GCTATCACATCAC	.	PASS	Atlas-SNP
APOL5	80831	hgsc.bcm.edu	37	22	36122574	36122574	+	Silent	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	109.0	27.0	113.0	0.0	0.247706	0	.	.	none	.	APOL5	45	.	NM_030642	exon3	c.C459T	p.I153I	GAACATCCTGGGT	.	PASS	Atlas-SNP
SLC5A8	160728	hgsc.bcm.edu	37	12	101603483	101603483	+	Silent	SNP	G	G	A	rs147835898	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	24.0	10.0	22.0	0.0	0.416667	0	G|0.999;T|0.001	.	alt	.	SLC5A8	102	.	NM_145913	exon1	c.C144T	p.G48G	GCGGCCGCCCATC	.	PASS	Atlas-SNP
MAML3	55534	hgsc.bcm.edu	37	4	140811088	140811088	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	96.0	15.0	82.0	0.0	0.15625	0	.	.	none	.	MAML3	192	.	NM_018717	exon2	c.A1502G	p.Q501R	TGCTGCTGCTGCT	.	PASS	Atlas-SNP
MUC5B	727897	hgsc.bcm.edu	37	11	1268741	1268741	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	181.0	46.0	195.0	0.0	0.254144	0	.	.	none	.	MUC5B	473	.	NM_002458	exon31	c.C10631T	p.T3544I	CAGCCACACCCAG	.	PASS	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	37	9	35720844	35720844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	59.0	9.0	59.0	0.0	0.152542	0	.	.	none	.	TLN1	185	.	NM_006289	exon11	c.C1171T	p.L391F	CAATGAGCTGTGC	.	PASS	Atlas-SNP
ANKRD50	57182	hgsc.bcm.edu	37	4	125631534	125631534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	93.0	32.0	95.0	0.0	0.344086	0	.	.	none	.	ANKRD50	136	.	NM_020337	exon2	c.A133C	p.N45H	CACTATTGCAGCA	.	PASS	Atlas-SNP
FAM19A1	407738	hgsc.bcm.edu	37	3	68055837	68055837	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	196.0	64.0	154.0	0.0	0.326531	0	.	.	none	.	FAM19A1	58	.	NM_213609	exon2	c.G68T	p.C23F	TACTCTGCCATGG	.	PASS	Atlas-SNP
TNKS	8658	hgsc.bcm.edu	37	8	9567708	9567708	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	122.0	29.0	163.0	0.0	0.237705	0	.	.	none	.	TNKS	198	.	NM_003747	exon11	c.T1727G	p.V576G	TGGAAGTTCTGCA	.	PASS	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	37	11	6561152	6561152	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A82F-01A-11D-A382-10	TCGA-FA-A82F-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ebd77cf-f8b7-4164-9d3c-dac8c78331ef	089c6a18-5963-41a2-8224-5793318db837	84.0	25.0	83.0	0.0	0.297619	0	.	.	none	.	DNHD1	198	.	NM_144666	exon18	c.G3467A	p.R1156Q	CTATACGGCGGTT	.	PASS	Atlas-SNP