Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
ROBO2	6092	hgsc.bcm.edu	37	3	77147265	77147265	+	Silent	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	139.0	8.0	89.0	0.0	0.057554	0	.	.	none	.	ROBO2	527	.	NM_002942	exon2	c.G162A	p.A54A	CAAGGCGGAGGGC	.	PASS	Atlas-SNP
PEX5L	51555	hgsc.bcm.edu	37	3	179525541	179525541	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	80.0	5.0	55.0	0.0	0.0625	0	.	.	none	.	PEX5L	104	.	NM_016559	exon14	c.C1597T	p.R533X	GTGCTCGCGTATA	.	PASS	Atlas-SNP
ZC3H12A	80149	hgsc.bcm.edu	37	1	37948367	37948367	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	36.0	7.0	58.0	0.0	0.194444	0	.	.	none	.	ZC3H12A	58	.	NM_025079	exon6	c.C955T	p.R319X	AAGTGCCGATTCT	.	PASS	Atlas-SNP
TEX15	56154	hgsc.bcm.edu	37	8	30706107	30706107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	111.0	7.0	103.0	0.0	0.0630631	0	.	.	none	TEX15,colon,carcinoma,+1,1	TEX15	350	1	NM_031271	exon1	c.G427T	p.V143F	TGGTAACTTTATT	.	PASS	Atlas-SNP
EPSTI1	94240	hgsc.bcm.edu	37	13	43474489	43474489	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	65.0	4.0	77.0	0.0	0.0615385	0	.	.	none	.	EPSTI1	47	.	NM_001002264	exon10	c.C805A	p.Q269K	GCTCTTGCTGCTG	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203276562	203276562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	50.0	10.0	66.0	0.0	0.2	0	.	.	none	.	BTG2	16	.	NM_006763	exon2	c.G473A	p.S158N	TCTCCAGCTAGGC	.	PASS	Atlas-SNP
ASPH	444	hgsc.bcm.edu	37	8	62430094	62430094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	77.0	13.0	72.0	0.0	0.168831	0	.	.	none	.	ASPH	87	.	NM_004318	exon24	c.G2119A	p.E707K	TGGTCTCGTTGGC	.	PASS	Atlas-SNP
AAGAB	79719	hgsc.bcm.edu	37	15	67524188	67524188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	69.0	5.0	76.0	0.0	0.0724638	0	.	.	none	.	AAGAB	24	.	NM_024666	exon5	c.A499G	p.N167D	TGGCATTCAGGGC	.	PASS	Atlas-SNP
TMEM108	66000	hgsc.bcm.edu	37	3	133099739	133099739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	58.0	11.0	51.0	0.0	0.189655	0	.	.	none	.	TMEM108	67	.	NM_023943	exon4	c.G1184A	p.S395N	CAGAAAGCACTAT	.	PASS	Atlas-SNP
NEDD4	4734	hgsc.bcm.edu	37	15	56208006	56208006	+	Missense_Mutation	SNP	G	G	A	rs370701101		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	64.0	13.0	71.0	0.0	0.203125	0	.	.	weak	.	NEDD4	167	.	NM_198400	exon1	c.C1024T	p.R342W	GCGGCCGTATGTC	.	PASS	Atlas-SNP
COL1A2	1278	hgsc.bcm.edu	37	7	94041934	94041934	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	47.0	8.0	41.0	0.0	0.170213	0	.	.	none	.	COL1A2	240	.	NM_000089	exon25	c.C1443T	p.G481G	AATTGGCCCAGCT	.	PASS	Atlas-SNP
CSMD1	64478	hgsc.bcm.edu	37	8	2944669	2944669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	52.0	9.0	78.0	0.0	0.173077	0	.	.	none	CSMD1_ENST00000537824,NS,carcinoma,0,4	CSMD1	1469	4	NM_033225	exon49	c.G7424A	p.R2475Q	GGGTTTCGTCTAC	.	PASS	Atlas-SNP
COL22A1	169044	hgsc.bcm.edu	37	8	139606427	139606427	+	Missense_Mutation	SNP	A	A	G	rs72727814	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	117.0	11.0	155.0	0.0	0.0940171	0	A|0.995;T|0.005	.	alt	.	COL22A1	390	.	NM_152888	exon63	c.T4448C	p.L1483P	GCCAGGAGGTAGG	.	PASS	Atlas-SNP
GOLGA3	2802	hgsc.bcm.edu	37	12	133389993	133389993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	43.0	7.0	35.0	0.0	0.162791	0	.	.	none	.	GOLGA3	234	.	NM_001172557	exon4	c.C419A	p.S140Y	AGGGGAGAATCTG	.	PASS	Atlas-SNP
PLEKHD1	400224	hgsc.bcm.edu	37	14	69951714	69951714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	74.0	13.0	111.0	0.0	0.175676	0	.	.	none	.	PLEKHD1	24	.	NM_001161498	exon1	c.C32G	p.P11R	TGTCGCCCTCGCC	.	PASS	Atlas-SNP
GDA	9615	hgsc.bcm.edu	37	9	74838127	74838127	+	Missense_Mutation	SNP	G	G	A	rs142139311		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	96.0	5.0	100.0	0.0	0.0520833	0	G|1.000;A|0.000	0.000	weak	.	GDA	113	.	NM_004293	exon7	c.G698A	p.R233H	AAACCCGTGATTT	.	PASS	Atlas-SNP
PCYOX1L	78991	hgsc.bcm.edu	37	5	148742308	148742308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	44.0	14.0	58.0	0.0	0.318182	0	.	.	none	.	PCYOX1L	32	.	NM_024028	exon2	c.G197T	p.R66L	GTGGCCGCTTGGC	.	PASS	Atlas-SNP
EVC2	132884	hgsc.bcm.edu	37	4	5630349	5630349	+	Missense_Mutation	SNP	C	C	T	rs145693546	bycluster;byfrequency;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	51.0	10.0	68.0	0.0	0.196078	0	C|0.998;T|0.002	0.002	strong	EVC2,NS,carcinoma,0,2	EVC2	202	2	NM_147127	exon12	c.G1823A	p.R608H	TGCACACGGGTCT	.	PASS	Atlas-SNP
CSMD3	114788	hgsc.bcm.edu	37	8	113657379	113657379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	66.0	14.0	90.0	0.0	0.212121	0	.	.	none	CSMD3_ENST00000343508,NS,carcinoma,0,5	CSMD3	2325	5	NM_198123	exon20	c.C3269T	p.S1090F	TTCAGAGAATTTG	.	PASS	Atlas-SNP
RNF128	79589	hgsc.bcm.edu	37	X	105970554	105970554	+	Missense_Mutation	SNP	G	G	C	rs148223909		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	176.0	50.0	197.0	0.0	0.284091	0	G|1.000;C|0.000	0.000	weak	.	RNF128	74	.	NM_194463	exon1	c.G411C	p.E137D	TTATGAGAGAGGG	.	PASS	Atlas-SNP
BTG1	694	hgsc.bcm.edu	37	12	92539200	92539200	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	85.0	12.0	123.0	1.0	0.141176	0.00813008	.	.	none	BTG1,NS,lymphoid_neoplasm,0,1	BTG1	30	1	NM_001731	exon1	c.C112T	p.Q38X	AGGTCTGCAGCTG	.	scavenged	Atlas-SNP
GDF3	9573	hgsc.bcm.edu	37	12	7848214	7848214	+	Silent	SNP	C	C	T	rs376751766		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	82.0	13.0	119.0	0.0	0.158537	0	.	.	weak	.	GDF3	68	.	NM_020634	exon1	c.G111A	p.K37K	AGGCGCCTTATCT	.	PASS	Atlas-SNP
STK11	6794	hgsc.bcm.edu	37	19	1220490	1220490	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	68.0	10.0	66.0	0.0	0.147059	0	.	.	none	STK11,NS,carcinoma,0,1	STK11	410	1	NM_000455	exon4	c.C583T	p.L195L	TCCGACCTGGGCG	.	PASS	Atlas-SNP
AKAP11	11215	hgsc.bcm.edu	37	13	42877901	42877901	+	Silent	SNP	C	C	T	rs201525107	by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	96.0	24.0	110.0	0.0	0.25	0	C|1.000;T|0.000	0.000	strong	.	AKAP11	146	.	NM_016248	exon8	c.C5019T	p.A1673A	GGCAGCCGACAGT	.	PASS	Atlas-SNP
CD79B	974	hgsc.bcm.edu	37	17	62006798	62006798	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	50.0	21.0	71.0	0.0	0.42	0	.	.	none	CD79B,NS,lymphoid_neoplasm,-1,13	CD79B	38	13	NM_001039933	exon5	c.A590T	p.Y197F	ACCTCGTAGGTGT	.	PASS	Atlas-SNP
CUX1	1523	hgsc.bcm.edu	37	7	101892121	101892121	+	Silent	SNP	G	G	A	rs410825	bycluster;by1000genomes	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	5.0	5.0	0.0	0.0	1	.	G|0.460;A|0.540	0.540	strong	.	CUX1	253	.	NM_001202543	exon24	c.G4350A	p.P1450P	CGCGCCGCCGCCC	.	PASS	Atlas-SNP
SALL1	6299	hgsc.bcm.edu	37	16	51175655	51175655	+	Missense_Mutation	SNP	C	C	T	rs199760974		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	43.0	8.0	83.0	0.0	0.186047	0	.	.	weak	.	SALL1	301	.	NM_002968	exon2	c.G478A	p.G160S	CGCCGCCGCTGCT	.	PASS	Atlas-SNP
CCDC81	60494	hgsc.bcm.edu	37	11	86131001	86131001	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	74.0	16.0	72.0	0.0	0.216216	0	.	.	none	.	CCDC81	89	.	NM_001156474	exon14	c.C1723T	p.R575X	CTGGAGCGAGTAA	.	PASS	Atlas-SNP
SLC16A1	6566	hgsc.bcm.edu	37	1	113460019	113460019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	113.0	30.0	162.0	0.0	0.265487	0	.	.	none	.	SLC16A1	61	.	NM_001166496	exon4	c.G1009A	p.V337I	CAACAACGGAAGC	.	PASS	Atlas-SNP
NR0B1	190	hgsc.bcm.edu	37	X	30327153	30327153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	141.0	10.0	134.0	0.0	0.070922	0	.	.	none	.	NR0B1	61	.	NM_000475	exon1	c.G328A	p.G110S	CAGAGCCGCACGA	.	PASS	Atlas-SNP
HTT	3064	hgsc.bcm.edu	37	4	3184180	3184180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	51.0	16.0	88.0	0.0	0.313726	0	.	.	none	.	HTT	221	.	NM_002111	exon37	c.A4849G	p.M1617V	CTCCCAATGTTAG	.	PASS	Atlas-SNP
PLXNB3	5365	hgsc.bcm.edu	37	X	153039489	153039489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	50.0	10.0	58.0	0.0	0.2	0	.	.	none	.	PLXNB3	208	.	NM_001163257	exon21	c.C3524T	p.P1175L	TGGCACCCCTCAG	.	PASS	Atlas-SNP
NOTUM	147111	hgsc.bcm.edu	37	17	79912130	79912130	+	Splice_Site	SNP	A	A	G	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	84.0	5.0	93.0	0.0	0.0595238	0	.	.	none	.	NOTUM	50	.	NM_178493	exon11	c.1184+2T>C	.	ACACTGACCTCCG	.	PASS	Atlas-SNP
ISCU	23479	hgsc.bcm.edu	37	12	108956417	108956417	+	Missense_Mutation	SNP	T	T	G	rs67681514	alternate_allele	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	6.0	6.0	0.0	0.0	1	.	GG|0.500;TT|0.500	.	alt	.	ISCU	19	.	NM_213595	exon1	c.T19G	p.F7V	GGGGCTTTCCGTC	.	PASS	Atlas-SNP
USP4	7375	hgsc.bcm.edu	37	3	49362425	49362425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	102.0	10.0	87.0	0.0	0.0980392	0	.	.	none	USP4,mouth,carcinoma,+1,1	USP4	72	1	NM_199443	exon5	c.C535G	p.R179G	TTTCACGCTCCGC	.	PASS	Atlas-SNP
AIM1L	55057	hgsc.bcm.edu	37	1	26655287	26655287	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	47.0	12.0	61.0	0.0	0.255319	0	.	.	none	.	AIM1L	98	.	NM_001039775	exon16	c.G4392A	p.V1464V	GCTCCGCACCTCC	.	PASS	Atlas-SNP
RNF10	9921	hgsc.bcm.edu	37	12	121014414	121014414	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	77.0	14.0	113.0	0.0	0.181818	0	.	.	none	.	RNF10	75	.	NM_014868	exon17	c.G2381C	p.R794T	AGAAAAGAAAAAA	.	PASS	Atlas-SNP
FBP2	8789	hgsc.bcm.edu	37	9	97321395	97321395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	62.0	6.0	62.0	0.0	0.0967742	0	.	.	none	.	FBP2	26	.	NM_003837	exon7	c.G845A	p.C282Y	GGATTGCATTCAT	.	PASS	Atlas-SNP
DCT	1638	hgsc.bcm.edu	37	13	95092324	95092324	+	Missense_Mutation	SNP	A	A	G	rs138244474		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	92.0	12.0	121.0	1.0	0.130435	0.00826446	A|1.000;G|0.000	0.000	weak	DCT_ENST00000446125,colon,carcinoma,0,2	DCT	186	2	NM_001129889	exon10	c.T1487C	p.V496A	TCTTCAACTGAAA	.	scavenged	Atlas-SNP
ZNF503	84858	hgsc.bcm.edu	37	10	77158962	77158962	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	21.0	10.0	21.0	0.0	0.47619	0	.	.	none	.	ZNF503	25	.	NM_032772	exon2	c.G1486A	p.A496T	GGCCGGCCAGGGA	.	PASS	Atlas-SNP
DAZAP1	26528	hgsc.bcm.edu	37	19	1434903	1434903	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	47.0	19.0	49.0	0.0	0.404255	0	.	.	none	.	DAZAP1	52	.	NM_018959	exon12	c.C1216T	p.R406X	CCCTACCGACGCT	.	PASS	Atlas-SNP
PSG8	440533	hgsc.bcm.edu	37	19	43268286	43268286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	155.0	18.0	194.0	0.0	0.116129	0	.	.	none	.	PSG8	101	.	NM_001130167	exon2	c.A212G	p.Q71R	CTGATTTGCCCTT	.	PASS	Atlas-SNP
TNF	7124	hgsc.bcm.edu	37	6	31543608	31543608	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	40.0	14.0	54.0	0.0	0.35	0	.	.	none	.	TNF	15	.	NM_000594	exon1	c.C90T	p.C30C	GCGGTGCTTGTTC	.	PASS	Atlas-SNP
TRPC6	7225	hgsc.bcm.edu	37	11	101375357	101375357	+	Missense_Mutation	SNP	G	G	A	rs199884871	bycluster	TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	72.0	6.0	93.0	0.0	0.0833333	0	.	.	weak	TRPC6,NS,carcinoma,+1,1	TRPC6	132	1	NM_004621	exon2	c.C343T	p.R115W	TCTTCCGCACCAC	.	PASS	Atlas-SNP
ARIH2	10425	hgsc.bcm.edu	37	3	49017001	49017001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	84.0	14.0	74.0	1.0	0.166667	0.0135135	.	.	none	ARIH2,NS,carcinoma,0,1	ARIH2	32	1	NM_006321	exon12	c.G1048A	p.V350M	GACATCGTGAACC	.	scavenged	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	37	10	21309077	21309077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	113.0	8.0	96.0	0.0	0.0707965	0	.	.	none	NEBL_ENST00000417816,NS,malignant_melanoma,-1,2	NEBL	199	2	NM_001173484	exon3	c.G218A	p.R73H	TTCAGGCGAAGAT	.	PASS	Atlas-SNP
PLEKHD1	400224	hgsc.bcm.edu	37	14	69951715	69951715	+	Silent	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	73.0	12.0	111.0	0.0	0.164384	0	.	.	none	.	PLEKHD1	24	.	NM_001161498	exon1	c.C33T	p.P11P	GTCGCCCTCGCCG	.	PASS	Atlas-SNP
RASA3	22821	hgsc.bcm.edu	37	13	114783725	114783725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	84.0	18.0	132.0	0.0	0.214286	0	.	.	none	.	RASA3	83	.	NM_007368	exon11	c.G946A	p.V316M	CTGACACGGGCTG	.	PASS	Atlas-SNP
SYTL5	94122	hgsc.bcm.edu	37	X	37965974	37965974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A6HO-01A-11D-A31X-10	TCGA-FA-A6HO-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4663fa5a-53e7-40be-a662-6aaa4e456475	16d8b5be-a00c-43cf-8121-f0c8b5dcc5c2	194.0	33.0	178.0	0.0	0.170103	0	.	.	none	.	SYTL5	72	.	NM_001163334	exon11	c.G1350T	p.K450N	TGTCAAGAATTGC	.	PASS	Atlas-SNP