Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID CARD11 84433 hgsc.bcm.edu 36 7 2950412 2950412 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GLI3 2737 hgsc.bcm.edu 36 7 41978691 41978691 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e URGCP 0 hgsc.bcm.edu 36 7 43883845 43883845 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ABCA13 154664 hgsc.bcm.edu 36 7 48360820 48360820 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e AKAP9 10142 hgsc.bcm.edu 36 7 91564099 91564099 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ASB4 51666 hgsc.bcm.edu 36 7 94963226 94963226 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MUC17 140453 hgsc.bcm.edu 36 7 100466369 100466369 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FBXL13 222235 hgsc.bcm.edu 36 7 102354022 102354022 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CCDC136 64753 hgsc.bcm.edu 36 7 128243167 128243167 + Silent SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FAM40B 57464 hgsc.bcm.edu 36 7 128891737 128891737 + Missense_Mutation SNP C C G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SSPO 23145 hgsc.bcm.edu 36 7 149131710 149131710 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NCOA6 23054 hgsc.bcm.edu 36 20 32806321 32806321 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TRPC4AP 26133 hgsc.bcm.edu 36 20 33095977 33095977 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TOP1 7150 hgsc.bcm.edu 36 20 39142149 39142149 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SERINC3 10955 hgsc.bcm.edu 36 20 42566867 42566867 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CSE1L 1434 hgsc.bcm.edu 36 20 47124763 47124763 + Missense_Mutation SNP G G C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CSE1L 1434 hgsc.bcm.edu 36 20 47124764 47124764 + Nonsense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CDH4 1002 hgsc.bcm.edu 36 20 59781594 59781594 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZDHHC8 29801 hgsc.bcm.edu 36 22 18506823 18506823 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF280B 140883 hgsc.bcm.edu 36 22 21172526 21172526 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CHEK2 11200 hgsc.bcm.edu 36 22 27421840 27421840 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CHEK2 11200 hgsc.bcm.edu 36 22 27421841 27421841 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NF2 4771 hgsc.bcm.edu 36 22 28391007 28391007 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ELFN2 114794 hgsc.bcm.edu 36 22 36100948 36100948 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CSNK1E 1454 hgsc.bcm.edu 36 22 37026726 37026726 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TNRC6B 23112 hgsc.bcm.edu 36 22 39011685 39011685 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NPAS3 64067 hgsc.bcm.edu 36 14 32754317 32754317 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NPAS3 64067 hgsc.bcm.edu 36 14 33336471 33336471 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MIPOL1 145282 hgsc.bcm.edu 36 14 36847324 36847324 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FSCB 84075 hgsc.bcm.edu 36 14 44045300 44045300 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HIF1A 3091 hgsc.bcm.edu 36 14 61276987 61276987 + Silent SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GPHB5 122876 hgsc.bcm.edu 36 14 62854158 62854158 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SYNE2 23224 hgsc.bcm.edu 36 14 63725127 63725127 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C14orf102 55051 hgsc.bcm.edu 36 14 89825233 89825233 + Missense_Mutation SNP A A T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIAA1409 57578 hgsc.bcm.edu 36 14 93242875 93242875 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DIO3 1735 hgsc.bcm.edu 36 14 101097833 101097833 + Nonsense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e EMR1 2015 hgsc.bcm.edu 36 19 6864693 6864693 + Silent SNP T T G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ANGPTL4 51129 hgsc.bcm.edu 36 19 8340184 8340184 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MUC16 94025 hgsc.bcm.edu 36 19 8879555 8879555 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MUC16 94025 hgsc.bcm.edu 36 19 8922043 8922043 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PIN1 23037 hgsc.bcm.edu 36 19 9810160 9810160 + Missense_Mutation SNP G G C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF439 90594 hgsc.bcm.edu 36 19 11840244 11840244 + Nonsense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TSHZ3 57616 hgsc.bcm.edu 36 19 36459773 36459773 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FFAR3 2865 hgsc.bcm.edu 36 19 40541780 40541780 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PRX 57716 hgsc.bcm.edu 36 19 45594806 45594806 + Silent SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MARK4 57787 hgsc.bcm.edu 36 19 50482620 50482620 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LMTK3 114783 hgsc.bcm.edu 36 19 53696107 53696107 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FCGRT 2217 hgsc.bcm.edu 36 19 54709501 54709501 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GPR32 2854 hgsc.bcm.edu 36 19 55966624 55966624 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF331 55422 hgsc.bcm.edu 36 19 58772699 58772699 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIR2DL1 3802 hgsc.bcm.edu 36 19 59976839 59976839 + Missense_Mutation SNP A A C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NLRP2 55655 hgsc.bcm.edu 36 19 60186347 60186347 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZSCAN5B 342933 hgsc.bcm.edu 36 19 61395077 61395077 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF134 7693 hgsc.bcm.edu 36 19 62824201 62824201 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C8orf48 157773 hgsc.bcm.edu 36 8 13469443 13469443 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CSGALNACT1 55790 hgsc.bcm.edu 36 8 19360412 19360412 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZMAT4 79698 hgsc.bcm.edu 36 8 40651577 40651577 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e IKBKB 3551 hgsc.bcm.edu 36 8 42295992 42295992 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ST18 9705 hgsc.bcm.edu 36 8 53207225 53207225 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e VCPIP1 80124 hgsc.bcm.edu 36 8 67740308 67740308 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PREX2 80243 hgsc.bcm.edu 36 8 69128026 69128026 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZFHX4 79776 hgsc.bcm.edu 36 8 77926023 77926023 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e E2F5 1875 hgsc.bcm.edu 36 8 86313249 86313249 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e COL14A1 7373 hgsc.bcm.edu 36 8 121336699 121336699 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HAS2 3037 hgsc.bcm.edu 36 8 122710203 122710203 + Missense_Mutation SNP A A C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIAA0196 9897 hgsc.bcm.edu 36 8 126160301 126160301 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GML 2765 hgsc.bcm.edu 36 8 143925003 143925003 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CCDC27 148870 hgsc.bcm.edu 36 1 3659131 3659131 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MTOR 2475 hgsc.bcm.edu 36 1 11241933 11241933 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LIN28A 79727 hgsc.bcm.edu 36 1 26610580 26610580 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ARID1A 8289 hgsc.bcm.edu 36 1 26930450 26930450 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ARID1A 8289 hgsc.bcm.edu 36 1 26972786 26972786 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CLSPN 63967 hgsc.bcm.edu 36 1 35998799 35998799 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CLSPN 63967 hgsc.bcm.edu 36 1 36002675 36002675 + Nonsense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e EIF2C4 192670 hgsc.bcm.edu 36 1 36070371 36070371 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CDCP2 200008 hgsc.bcm.edu 36 1 54378332 54378332 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GPR88 54112 hgsc.bcm.edu 36 1 100777257 100777257 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e WNT2B 7482 hgsc.bcm.edu 36 1 112860463 112860463 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FLG 2312 hgsc.bcm.edu 36 1 150550929 150550929 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FLG 2312 hgsc.bcm.edu 36 1 150551624 150551624 + Nonsense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HAPLN2 60484 hgsc.bcm.edu 36 1 154860787 154860787 + Missense_Mutation SNP C C G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SMG7 9887 hgsc.bcm.edu 36 1 181769460 181769460 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TPR 7175 hgsc.bcm.edu 36 1 184598685 184598685 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CDC73 79577 hgsc.bcm.edu 36 1 191357980 191357980 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MFSD4 148808 hgsc.bcm.edu 36 1 203827972 203827972 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HLX 3142 hgsc.bcm.edu 36 1 219122183 219122183 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HHIPL2 79802 hgsc.bcm.edu 36 1 220763593 220763593 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C1orf95 375057 hgsc.bcm.edu 36 1 224851138 224851138 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e OBSCN 84033 hgsc.bcm.edu 36 1 226504538 226504538 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TRIM67 440730 hgsc.bcm.edu 36 1 229406244 229406244 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ARID4B 51742 hgsc.bcm.edu 36 1 233482714 233482714 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NLRP3 114548 hgsc.bcm.edu 36 1 245653883 245653883 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PNPLA2 57104 hgsc.bcm.edu 36 11 811962 811962 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e OR10A2 341276 hgsc.bcm.edu 36 11 6847699 6847699 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e STK33 65975 hgsc.bcm.edu 36 11 8370709 8370709 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e OR4C45 403257 hgsc.bcm.edu 36 11 48330464 48330464 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CTSF 8722 hgsc.bcm.edu 36 11 66090431 66090431 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ANO1 55107 hgsc.bcm.edu 36 11 69649833 69649833 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e WNT11 7481 hgsc.bcm.edu 36 11 75585239 75585239 + Silent SNP G G C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LRRC32 2615 hgsc.bcm.edu 36 11 76049212 76049212 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TYR 7299 hgsc.bcm.edu 36 11 88551004 88551004 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FAT3 120114 hgsc.bcm.edu 36 11 91897589 91897589 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e IL18 3606 hgsc.bcm.edu 36 11 111519639 111519639 + Nonsense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CBL 867 hgsc.bcm.edu 36 11 118654091 118654091 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e OR10C1 442194 hgsc.bcm.edu 36 6 29515959 29515959 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TRIM15 89870 hgsc.bcm.edu 36 6 30246302 30246302 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HLA-DOA 3111 hgsc.bcm.edu 36 6 33083991 33083991 + Silent SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DNAH8 1769 hgsc.bcm.edu 36 6 38975645 38975645 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CD109 135228 hgsc.bcm.edu 36 6 74581522 74581522 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e EPHA7 2045 hgsc.bcm.edu 36 6 94035998 94035998 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIAA0776 23376 hgsc.bcm.edu 36 6 97108067 97108067 + Silent SNP C C G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SIM1 6492 hgsc.bcm.edu 36 6 100945523 100945523 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZBTB24 9841 hgsc.bcm.edu 36 6 109903332 109903332 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LAMA2 3908 hgsc.bcm.edu 36 6 129683415 129683415 + Silent SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TNFAIP3 7128 hgsc.bcm.edu 36 6 138234111 138234111 + Silent SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e UTRN 7402 hgsc.bcm.edu 36 6 144810459 144810459 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ESR1 2099 hgsc.bcm.edu 36 6 152461641 152461641 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SYNE1 23345 hgsc.bcm.edu 36 6 152710060 152710060 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MAP3K4 4216 hgsc.bcm.edu 36 6 161439323 161439323 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TP53 7157 hgsc.bcm.edu 36 17 7518236 7518236 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MAP2K4 6416 hgsc.bcm.edu 36 17 11973217 11973217 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FLCN 201163 hgsc.bcm.edu 36 17 17060429 17060429 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NT5M 56953 hgsc.bcm.edu 36 17 17150659 17150659 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PEMT 10400 hgsc.bcm.edu 36 17 17366410 17366410 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e BRIP1 83990 hgsc.bcm.edu 36 17 57176600 57176600 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GGA3 23163 hgsc.bcm.edu 36 17 70748032 70748032 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e EVPL 2125 hgsc.bcm.edu 36 17 71515120 71515120 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DNAH17 8632 hgsc.bcm.edu 36 17 74074397 74074397 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CYYR1 116159 hgsc.bcm.edu 36 21 26774605 26774605 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KRTAP13-1 140258 hgsc.bcm.edu 36 21 30690533 30690533 + Silent SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KRTAP19-7 337974 hgsc.bcm.edu 36 21 30855441 30855441 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DYRK1A 1859 hgsc.bcm.edu 36 21 37774959 37774959 + Silent SNP C C T rs1049773 unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e COL18A1 80781 hgsc.bcm.edu 36 21 45712692 45712692 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e RHOT2 89941 hgsc.bcm.edu 36 16 658515 658515 + Silent SNP C C G rs7204542 by2Hit2Allele;byCluster TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GRIN2A 2903 hgsc.bcm.edu 36 16 9851229 9851229 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DNAH3 55567 hgsc.bcm.edu 36 16 20882503 20882503 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PALB2 79728 hgsc.bcm.edu 36 16 23522339 23522339 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SLC12A3 6559 hgsc.bcm.edu 36 16 55477798 55477798 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KCTD19 146212 hgsc.bcm.edu 36 16 65888973 65888973 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NFATC3 4775 hgsc.bcm.edu 36 16 66749292 66749292 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PRMT7 54496 hgsc.bcm.edu 36 16 66930884 66930884 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LOXHD1 125336 hgsc.bcm.edu 36 18 42358843 42358843 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LOXHD1 125336 hgsc.bcm.edu 36 18 42490905 42490905 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SMAD4 4089 hgsc.bcm.edu 36 18 46858686 46858686 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SERPINB3 6317 hgsc.bcm.edu 36 18 59477628 59477628 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CDH19 28513 hgsc.bcm.edu 36 18 62369438 62369438 + Silent SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e XIRP1 165904 hgsc.bcm.edu 36 3 39202783 39202783 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF502 91392 hgsc.bcm.edu 36 3 44738245 44738245 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIF15 56992 hgsc.bcm.edu 36 3 44842875 44842875 + Missense_Mutation SNP T T G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PTPRG 5793 hgsc.bcm.edu 36 3 61709621 61709621 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SNTN 132203 hgsc.bcm.edu 36 3 63624747 63624747 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e OR5H6 79295 hgsc.bcm.edu 36 3 99465933 99465933 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TBC1D23 55773 hgsc.bcm.edu 36 3 101503763 101503763 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GPR128 84873 hgsc.bcm.edu 36 3 101847624 101847624 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GOLGB1 2804 hgsc.bcm.edu 36 3 122918505 122918505 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PAQR9 344838 hgsc.bcm.edu 36 3 144164448 144164448 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CHST2 9435 hgsc.bcm.edu 36 3 144323065 144323065 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZIC4 84107 hgsc.bcm.edu 36 3 148591536 148591536 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e RNF168 165918 hgsc.bcm.edu 36 3 197686525 197686525 + Missense_Mutation SNP C C G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PLEKHG6 55200 hgsc.bcm.edu 36 12 6297372 6297372 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SLC2A3 6515 hgsc.bcm.edu 36 12 7975291 7975291 + Silent SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PLCZ1 89869 hgsc.bcm.edu 36 12 18745896 18745896 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SLCO1B1 10599 hgsc.bcm.edu 36 12 21221097 21221097 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CASC1 55259 hgsc.bcm.edu 36 12 25188838 25188838 + Nonsense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KRAS 3845 hgsc.bcm.edu 36 12 25289548 25289548 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PPFIBP1 8496 hgsc.bcm.edu 36 12 27700816 27700816 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ERGIC2 51290 hgsc.bcm.edu 36 12 29401900 29401900 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LRRK2 120892 hgsc.bcm.edu 36 12 38943924 38943924 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CNTN1 1272 hgsc.bcm.edu 36 12 39624070 39624070 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MARS 4141 hgsc.bcm.edu 36 12 56169585 56169585 + Nonsense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C12orf64 283310 hgsc.bcm.edu 36 12 79273674 79273674 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e STAB2 55576 hgsc.bcm.edu 36 12 102651048 102651048 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HCFC2 29915 hgsc.bcm.edu 36 12 103011383 103011383 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PTPN11 5781 hgsc.bcm.edu 36 12 111372523 111372523 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DNAH10 196385 hgsc.bcm.edu 36 12 122836258 122836258 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PIWIL1 9271 hgsc.bcm.edu 36 12 129413271 129413271 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e OTUD7A 161725 hgsc.bcm.edu 36 15 29606787 29606787 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e IVD 3712 hgsc.bcm.edu 36 15 38487138 38487138 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e JMJD7-PLA2G4B 8681 hgsc.bcm.edu 36 15 39924062 39924062 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIAA1370 56204 hgsc.bcm.edu 36 15 50664342 50664342 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e UNC13C 440279 hgsc.bcm.edu 36 15 52094953 52094953 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HERC1 8925 hgsc.bcm.edu 36 15 61695891 61695891 + Missense_Mutation SNP G G C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ANKDD1A 348094 hgsc.bcm.edu 36 15 63010107 63010107 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CSPG4 1464 hgsc.bcm.edu 36 15 73767134 73767134 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SCAPER 49855 hgsc.bcm.edu 36 15 74844371 74844371 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PEAK1 0 hgsc.bcm.edu 36 15 75212886 75212886 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIF7 374654 hgsc.bcm.edu 36 15 87996942 87996942 + Missense_Mutation SNP A A T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CASK 8573 hgsc.bcm.edu 36 X 41489789 41489789 + Silent SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FOXR2 139628 hgsc.bcm.edu 36 X 55667522 55667522 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIAA2022 340533 hgsc.bcm.edu 36 X 73880520 73880520 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LPAR4 2846 hgsc.bcm.edu 36 X 77897941 77897941 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e POU3F4 5456 hgsc.bcm.edu 36 X 82650381 82650381 + Silent SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DIAPH2 1730 hgsc.bcm.edu 36 X 96389487 96389487 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e BHLHB9 80823 hgsc.bcm.edu 36 X 101891282 101891282 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CXorf64 100130613 hgsc.bcm.edu 36 X 125782773 125782773 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF449 203523 hgsc.bcm.edu 36 X 134321555 134321555 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e F9 2158 hgsc.bcm.edu 36 X 138458262 138458262 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PSAPL1 768239 hgsc.bcm.edu 36 4 7487456 7487456 + Silent SNP T T G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FGFBP2 83888 hgsc.bcm.edu 36 4 15573583 15573583 + Missense_Mutation SNP G G A rs758329 by2Hit2Allele;byCluster;byFrequency;byHapMap TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e RBPJ 3516 hgsc.bcm.edu 36 4 26041434 26041434 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PDGFRA 5156 hgsc.bcm.edu 36 4 54834595 54834595 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PDGFRA 5156 hgsc.bcm.edu 36 4 54848401 54848401 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PDGFRA 5156 hgsc.bcm.edu 36 4 54851344 54851344 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIT 3815 hgsc.bcm.edu 36 4 55286919 55286919 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIT 3815 hgsc.bcm.edu 36 4 55288411 55288411 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e EPHA5 2044 hgsc.bcm.edu 36 4 65872446 65872446 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ADH7 131 hgsc.bcm.edu 36 4 100568056 100568056 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CCDC109B 55013 hgsc.bcm.edu 36 4 110800847 110800847 + Silent SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SYNPO2 171024 hgsc.bcm.edu 36 4 120167700 120167700 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e QRFPR 84109 hgsc.bcm.edu 36 4 122521084 122521084 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DDX60L 91351 hgsc.bcm.edu 36 4 169573144 169573144 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SNTG2 54221 hgsc.bcm.edu 36 2 1194795 1194795 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SOX11 6664 hgsc.bcm.edu 36 2 5751538 5751538 + Nonsense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e APOB 338 hgsc.bcm.edu 36 2 21083185 21083185 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TRIM54 57159 hgsc.bcm.edu 36 2 27375039 27375039 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MSH2 4436 hgsc.bcm.edu 36 2 47493071 47493071 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LHCGR 3973 hgsc.bcm.edu 36 2 48768694 48768694 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e RTN4 57142 hgsc.bcm.edu 36 2 55106196 55106196 + Missense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e XPO1 7514 hgsc.bcm.edu 36 2 61574630 61574630 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ATP6V1B1 525 hgsc.bcm.edu 36 2 71043803 71043803 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e EGR4 1961 hgsc.bcm.edu 36 2 73372873 73372873 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FER1L5 90342 hgsc.bcm.edu 36 2 96728558 96728558 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C2orf76 130355 hgsc.bcm.edu 36 2 119813950 119813950 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TSN 7247 hgsc.bcm.edu 36 2 122239201 122239201 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CNTNAP5 129684 hgsc.bcm.edu 36 2 124499713 124499713 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SPOPL 339745 hgsc.bcm.edu 36 2 139034865 139034865 + Missense_Mutation SNP T T G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SCN2A 6326 hgsc.bcm.edu 36 2 165880396 165880396 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ATF2 2668 hgsc.bcm.edu 36 2 175666166 175666166 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TTN 7273 hgsc.bcm.edu 36 2 179102090 179102090 + Missense_Mutation SNP A A C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TTN 7273 hgsc.bcm.edu 36 2 179166445 179166445 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C2orf67 151050 hgsc.bcm.edu 36 2 210597007 210597007 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ATIC 471 hgsc.bcm.edu 36 2 215911800 215911800 + Silent SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SPEG 10290 hgsc.bcm.edu 36 2 220056253 220056253 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SPHKAP 80309 hgsc.bcm.edu 36 2 228590186 228590186 + Missense_Mutation SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CHRND 1144 hgsc.bcm.edu 36 2 233102919 233102919 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TLN1 7094 hgsc.bcm.edu 36 9 35697802 35697802 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TRPM3 80036 hgsc.bcm.edu 36 9 72341319 72341319 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e RORB 6096 hgsc.bcm.edu 36 9 76476544 76476544 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FAM75D1 0 hgsc.bcm.edu 36 9 83797038 83797038 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e DAPK1 1612 hgsc.bcm.edu 36 9 89454800 89454800 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e S1PR3 1903 hgsc.bcm.edu 36 9 90806907 90806907 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF189 7743 hgsc.bcm.edu 36 9 103210630 103210630 + Missense_Mutation SNP T T G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SMC2 10592 hgsc.bcm.edu 36 9 105929560 105929560 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PAPPA 5069 hgsc.bcm.edu 36 9 118184554 118184554 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e RAPGEF1 2889 hgsc.bcm.edu 36 9 133516107 133516107 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ATP12A 479 hgsc.bcm.edu 36 13 24179205 24179205 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GPR12 2835 hgsc.bcm.edu 36 13 26231369 26231369 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NBEA 26960 hgsc.bcm.edu 36 13 34583046 34583046 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CCNA1 8900 hgsc.bcm.edu 36 13 35909834 35909834 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e FREM2 341640 hgsc.bcm.edu 36 13 38328279 38328279 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e GPC6 10082 hgsc.bcm.edu 36 13 93832788 93832788 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HS6ST3 266722 hgsc.bcm.edu 36 13 96283326 96283326 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CUBN 8029 hgsc.bcm.edu 36 10 17125901 17125901 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PLXDC2 84898 hgsc.bcm.edu 36 10 20397168 20397168 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ARMC4 55130 hgsc.bcm.edu 36 10 28323962 28323962 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SYT15 83849 hgsc.bcm.edu 36 10 46381985 46381985 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HNRNPH3 3189 hgsc.bcm.edu 36 10 69771816 69771816 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PTEN 5728 hgsc.bcm.edu 36 10 89682769 89682769 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PTEN 5728 hgsc.bcm.edu 36 10 89682771 89682771 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PTEN 5728 hgsc.bcm.edu 36 10 89682843 89682843 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PTEN 5728 hgsc.bcm.edu 36 10 89710741 89710741 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TNKS2 80351 hgsc.bcm.edu 36 10 93566880 93566880 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LGI1 9211 hgsc.bcm.edu 36 10 95543050 95543050 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PKD2L1 9033 hgsc.bcm.edu 36 10 102042788 102042788 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SEMA4G 57715 hgsc.bcm.edu 36 10 102729887 102729887 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NOLC1 9221 hgsc.bcm.edu 36 10 103907272 103907272 + Missense_Mutation SNP T T G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ELOVL3 83401 hgsc.bcm.edu 36 10 103978940 103978940 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C5orf42 65250 hgsc.bcm.edu 36 5 37161139 37161139 + Silent SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HTR1A 3350 hgsc.bcm.edu 36 5 63293067 63293067 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e APC 324 hgsc.bcm.edu 36 5 112144490 112144490 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e APC 324 hgsc.bcm.edu 36 5 112164947 112164947 + Nonsense_Mutation SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e APC 324 hgsc.bcm.edu 36 5 112203280 112203280 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e APC 324 hgsc.bcm.edu 36 5 112203482 112203482 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ETF1 2107 hgsc.bcm.edu 36 5 137882297 137882297 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDHA2 56146 hgsc.bcm.edu 36 5 140156015 140156015 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDHA2 56146 hgsc.bcm.edu 36 5 140156605 140156605 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDHA10 56139 hgsc.bcm.edu 36 5 140217349 140217349 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDHA11 56138 hgsc.bcm.edu 36 5 140230096 140230096 + Silent SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDHAC2 56134 hgsc.bcm.edu 36 5 140327255 140327255 + Silent SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDHB11 56125 hgsc.bcm.edu 36 5 140559951 140559951 + Silent SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDHGA8 9708 hgsc.bcm.edu 36 5 140753504 140753504 + Missense_Mutation SNP T T C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LARS 51520 hgsc.bcm.edu 36 5 145527997 145527997 + Missense_Mutation SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e HMGXB3 22993 hgsc.bcm.edu 36 5 149366343 149366343 + Silent SNP C C T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C5orf47 133491 hgsc.bcm.edu 36 5 173349059 173349059 + Missense_Mutation SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF354C 30832 hgsc.bcm.edu 36 5 178438431 178438431 + Missense_Mutation SNP A A G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CSMD3 114788 hgsc.bcm.edu 36 8 113335732 113335732 + Splice_Site SNP C C A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e STUB1 10273 hgsc.bcm.edu 36 16 672020 672020 + Splice_Site SNP G G T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e RFC5 5985 hgsc.bcm.edu 36 12 116952014 116952014 + Splice_Site SNP G G A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e RPTN 126638 hgsc.bcm.edu 36 1 150395690 150395725 + In_Frame_Del DEL TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA TGGTGGGAATCTCTGTCTTGTTTCTCAGACTGACCA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ASPM 259266 hgsc.bcm.edu 36 1 195339388 195339389 + Frame_Shift_Ins INS - - A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LOC388946 388946 hgsc.bcm.edu 36 2 46561392 46561392 + Frame_Shift_Del DEL G G - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ADRA2B 151 hgsc.bcm.edu 36 2 96144713 96144714 + In_Frame_Ins INS - - TCCTCCTCT rs34667759 unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ACVR2A 92 hgsc.bcm.edu 36 2 148400156 148400156 + Frame_Shift_Del DEL A A - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e NOSTRIN 115677 hgsc.bcm.edu 36 2 169407808 169407809 + Frame_Shift_Ins INS - - A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SPATA3 130560 hgsc.bcm.edu 36 2 231569277 231569303 + In_Frame_Del DEL CAGCAGCCTAGCCCTGAATCCACACCA CAGCAGCCTAGCCCTGAATCCACACCA - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 CAGCAGCCTAGCCCTGAATCCACACCA CAGCAGCCTAGCCCTGAATCCACACCA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MUC4 4585 hgsc.bcm.edu 36 3 196993221 196993316 + In_Frame_Del DEL CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e SHROOM3 57619 hgsc.bcm.edu 36 4 77896720 77896721 + Frame_Shift_Ins INS - - A novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C6 5688 hgsc.bcm.edu 36 5 41194986 41194987 + Frame_Shift_Ins INS - - C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDHA9 9752 hgsc.bcm.edu 36 5 140210692 140210693 + Frame_Shift_Ins INS - - T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e PCDH12 51294 hgsc.bcm.edu 36 5 141305139 141305140 + In_Frame_Ins INS - - CTGCTGCTG rs5871792 unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CYP21A2 1589 hgsc.bcm.edu 36 6 32114194 32114196 + In_Frame_Del DEL CTG CTG - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 CTG CTG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KIAA1009 22832 hgsc.bcm.edu 36 6 84940596 84940597 + Frame_Shift_Ins INS - - T novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e MDN1 23195 hgsc.bcm.edu 36 6 90489396 90489396 + Frame_Shift_Del DEL T T - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e VPS13B 157680 hgsc.bcm.edu 36 8 100956956 100956957 + Frame_Shift_Ins INS - - C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CALHM3 119395 hgsc.bcm.edu 36 10 105223164 105223165 + In_Frame_Ins INS - - GGGGGCTCAGGCACTGCG novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CASP5 838 hgsc.bcm.edu 36 11 104384897 104384897 + Frame_Shift_Del DEL T T - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e CEP164 22897 hgsc.bcm.edu 36 11 116727858 116727858 + Frame_Shift_Del DEL A A - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e KRT4 3851 hgsc.bcm.edu 36 12 51493869 51493870 + Frame_Shift_Ins INS - - G novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e OR6C76 390326 hgsc.bcm.edu 36 12 54107226 54107226 + Frame_Shift_Del DEL A A - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e LRRIQ1 84125 hgsc.bcm.edu 36 12 84162777 84162777 + Frame_Shift_Del DEL A A - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e IFI27 3429 hgsc.bcm.edu 36 14 93651883 93651884 + In_Frame_Ins INS - - GGCCATGGC rs3833507 byCluster TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e C17orf55 284185 hgsc.bcm.edu 36 17 76893614 76893615 + Frame_Shift_Ins INS - - C rs3215153 byCluster TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e TGIF1 7050 hgsc.bcm.edu 36 18 3447782 3447783 + Frame_Shift_Ins INS - - TC novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e ZNF516 9658 hgsc.bcm.edu 36 18 72219946 72219946 + Frame_Shift_Del DEL G G - novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e UHRF1 29128 hgsc.bcm.edu 36 19 4905679 4905680 + Frame_Shift_Ins INS - - C novel unknown TCGA-CA-6716-01A-11D-1835-10 TCGA-CA-6716-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq 66e07576-acd9-4a73-8421-5e5999284177 960576ee-8735-40e5-9e0e-ad6ca526d94e