Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID DEFB116 245930 hgsc.bcm.edu 36 20 29354914 29354914 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 TFIP11 24144 hgsc.bcm.edu 36 22 25218249 25218249 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 TRIOBP 11078 hgsc.bcm.edu 36 22 36450076 36450076 + Nonsense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 SEPT3 55964 hgsc.bcm.edu 36 22 40718687 40718687 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MYO1F 4542 hgsc.bcm.edu 36 19 8522669 8522669 + Silent SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MUC16 94025 hgsc.bcm.edu 36 19 8938661 8938661 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MLL4 9757 hgsc.bcm.edu 36 19 40905935 40905935 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PRODH2 58510 hgsc.bcm.edu 36 19 40982817 40982817 + Missense_Mutation SNP C C T rs3761097 byCluster;byFrequency;byHapMap TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 GSK3A 2931 hgsc.bcm.edu 36 19 47430401 47430401 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ZNF304 57343 hgsc.bcm.edu 36 19 62560663 62560663 + Silent SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 CSMD3 114788 hgsc.bcm.edu 36 8 113368626 113368626 + Silent SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 CDC7 8317 hgsc.bcm.edu 36 1 91746068 91746068 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 C1orf103 55791 hgsc.bcm.edu 36 1 111295735 111295735 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 REG4 83998 hgsc.bcm.edu 36 1 120143882 120143882 + Missense_Mutation SNP C C G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ASH1L 55870 hgsc.bcm.edu 36 1 153757889 153757889 + Nonsense_Mutation SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 DUSP23 114971 hgsc.bcm.edu 36 1 158018656 158018656 + Silent SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 CD55 1604 hgsc.bcm.edu 36 1 205562362 205562362 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 OBSCN 84033 hgsc.bcm.edu 36 1 226587221 226587221 + Silent SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 TTC13 79573 hgsc.bcm.edu 36 1 229142906 229142906 + Missense_Mutation SNP C C G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 TRIM58 25893 hgsc.bcm.edu 36 1 246105844 246105844 + Silent SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 OR52E6 390078 hgsc.bcm.edu 36 11 5819150 5819150 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 LDHC 3948 hgsc.bcm.edu 36 11 18429141 18429141 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PSMC3 5702 hgsc.bcm.edu 36 11 47397063 47397063 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ATM 472 hgsc.bcm.edu 36 11 107627876 107627876 + Silent SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ST14 6768 hgsc.bcm.edu 36 11 129565699 129565699 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ALDH5A1 7915 hgsc.bcm.edu 36 6 24623517 24623517 + Silent SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 EPB41L2 2037 hgsc.bcm.edu 36 6 131232576 131232576 + Silent SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MYH10 4628 hgsc.bcm.edu 36 17 8392762 8392762 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MYH10 4628 hgsc.bcm.edu 36 17 8392764 8392764 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 NF1 4763 hgsc.bcm.edu 36 17 26691735 26691735 + Silent SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 TMEM132E 124842 hgsc.bcm.edu 36 17 29987186 29987186 + Silent SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 NSF 4905 hgsc.bcm.edu 36 17 42184079 42184079 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PTTG1IP 754 hgsc.bcm.edu 36 21 45100668 45100668 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 SALL1 6299 hgsc.bcm.edu 36 16 49730709 49730709 + Missense_Mutation SNP A A C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MYOM1 8736 hgsc.bcm.edu 36 18 3178882 3178882 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ALPK2 115701 hgsc.bcm.edu 36 18 54353973 54353973 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 VHL 7428 hgsc.bcm.edu 36 3 10163240 10163240 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PIK3R4 30849 hgsc.bcm.edu 36 3 131887939 131887939 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ATR 390502 hgsc.bcm.edu 36 3 143663532 143663532 + Nonsense_Mutation SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PIK3CA 5290 hgsc.bcm.edu 36 3 180418786 180418786 + Missense_Mutation SNP A A C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PIK3CA 5290 hgsc.bcm.edu 36 3 180434779 180434779 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ETV6 2120 hgsc.bcm.edu 36 12 11883449 11883449 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 LOH12CR1 118426 hgsc.bcm.edu 36 12 12405481 12405481 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 KIAA1467 57613 hgsc.bcm.edu 36 12 13110894 13110894 + Silent SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 KRAS 3845 hgsc.bcm.edu 36 12 25289551 25289551 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 LRRK2 120892 hgsc.bcm.edu 36 12 39015068 39015068 + Silent SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 FAM186B 84070 hgsc.bcm.edu 36 12 48281052 48281052 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 OR6C75 390323 hgsc.bcm.edu 36 12 54045826 54045826 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 TRHDE 29953 hgsc.bcm.edu 36 12 71179594 71179594 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 NTS 4922 hgsc.bcm.edu 36 12 84794586 84794586 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MYO1H 283446 hgsc.bcm.edu 36 12 108323356 108323356 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PTPN11 5781 hgsc.bcm.edu 36 12 111372587 111372587 + Silent SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MAP1A 4130 hgsc.bcm.edu 36 15 41606684 41606684 + Missense_Mutation SNP G G T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 IDH3A 3419 hgsc.bcm.edu 36 15 76242905 76242905 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 RASGRF1 5923 hgsc.bcm.edu 36 15 77060062 77060062 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 CHSY1 22856 hgsc.bcm.edu 36 15 99535996 99535996 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ATRX 546 hgsc.bcm.edu 36 X 76798727 76798727 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ADH1B 125 hgsc.bcm.edu 36 4 100448032 100448032 + Silent SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ANK2 287 hgsc.bcm.edu 36 4 114498911 114498911 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MSH6 2956 hgsc.bcm.edu 36 2 47879569 47879569 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MSH6 2956 hgsc.bcm.edu 36 2 47885626 47885626 + Missense_Mutation SNP A A T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 C2orf29 55571 hgsc.bcm.edu 36 2 101240820 101240820 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 GLI2 2736 hgsc.bcm.edu 36 2 121429396 121429396 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 BAZ2B 29994 hgsc.bcm.edu 36 2 159997726 159997726 + Missense_Mutation SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MRPL44 65080 hgsc.bcm.edu 36 2 224532521 224532521 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 TIGD1 200765 hgsc.bcm.edu 36 2 233122015 233122015 + Silent SNP C C T rs6752614 by2Hit2Allele;byCluster TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 HTR2A 3356 hgsc.bcm.edu 36 13 46367928 46367928 + Missense_Mutation SNP T T C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MYO16 23026 hgsc.bcm.edu 36 13 108177845 108177845 + Silent SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PITRM1 10531 hgsc.bcm.edu 36 10 3183508 3183508 + Silent SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ASB13 79754 hgsc.bcm.edu 36 10 5723922 5723922 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PTEN 5728 hgsc.bcm.edu 36 10 89682837 89682837 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PTEN 5728 hgsc.bcm.edu 36 10 89715027 89715027 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 FAM178A 400506 hgsc.bcm.edu 36 10 102667038 102667038 + Silent SNP G G T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 PIK3R1 5295 hgsc.bcm.edu 36 5 67626853 67626853 + Missense_Mutation SNP A A G novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 CMYA5 202333 hgsc.bcm.edu 36 5 79062121 79062121 + Missense_Mutation SNP G G A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 APC 324 hgsc.bcm.edu 36 5 112203273 112203273 + Silent SNP C C A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MGAT4B 11282 hgsc.bcm.edu 36 5 179160123 179160123 + Missense_Mutation SNP C C T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 NF1 4763 hgsc.bcm.edu 36 17 26610175 26610175 + Splice_Site SNP G G T novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MYL1 4632 hgsc.bcm.edu 36 2 210888011 210888011 + Frame_Shift_Del DEL T T - novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 ATR 390502 hgsc.bcm.edu 36 3 143757430 143757430 + Frame_Shift_Del DEL T T - novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MUC4 4585 hgsc.bcm.edu 36 3 196990687 196990734 + In_Frame_Del DEL GCTGGTGACAGGAAGAGGGGTGCCGTGACCTGTGGACACTGAGGAAGC GCTGGTGACAGGAAGAGGGGTGCCGTGACCTGTGGACACTGAGGAAGC - novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 GCTGGTGACAGGAAGAGGGGTGCCGTGACCTGTGGACACTGAGGAAGC GCTGGTGACAGGAAGAGGGGTGCCGTGACCTGTGGACACTGAGGAAGC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MUC4 4585 hgsc.bcm.edu 36 3 196993221 196993316 + In_Frame_Del DEL CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA - novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA CTGAGGAAGGGCTGGTGACATGAAGAGGGGTGGCGTGACCTGTGGATGCTGAGGAAGCGTCGGTGACAAGAAGAGGAGTGGCGTGACCTGTGGATA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 MUC2 4583 hgsc.bcm.edu 36 11 1082802 1082802 + Frame_Shift_Del DEL A A - novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 SELPLG 6404 hgsc.bcm.edu 36 12 107541780 107541809 + Frame_Shift_Del DEL GAGTGGTCTGTGCCTCCGTGGGCACTGGTT GAGTGGTCTGTGCCTCCGTGGGCACTGGTT - novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 GAGTGGTCTGTGCCTCCGTGGGCACTGGTT GAGTGGTCTGTGCCTCCGTGGGCACTGGTT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 KRTAP4-3 85290 hgsc.bcm.edu 36 17 36577755 36577756 + In_Frame_Ins INS - - GCAGCAGGTGGTCAG novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 AXIN2 8313 hgsc.bcm.edu 36 17 60984436 60984437 + Frame_Shift_Ins INS - - A novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 SOX9 6662 hgsc.bcm.edu 36 17 67631830 67631831 + Frame_Shift_Ins INS - - TG novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 SOX9 6662 hgsc.bcm.edu 36 17 67631832 67631834 + In_Frame_Del DEL CTC CTC - novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 CTC CTC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 UHRF1 29128 hgsc.bcm.edu 36 19 4905679 4905680 + Frame_Shift_Ins INS - - C novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87 KRTAP10-7 386675 hgsc.bcm.edu 36 21 44845084 44845098 + Frame_Shift_Del DEL CTGCTGCGCCCCCAG CTGCTGCGCCCCCAG - novel unknown TCGA-CA-5255-01A-11D-1835-10 TCGA-CA-5255-10A-01D-1835-10 CTGCTGCGCCCCCAG CTGCTGCGCCCCCAG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq ab3853d3-534b-439c-ad13-f4c3242ae5f3 fd470057-044e-4cbd-9b2d-2abb5dafbb87