Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
SPON1	10418	broad.mit.edu	36	11	14234767	14234767	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006108	exon10	c.A1261T	p.M421L	.	.	.
MRGPRX1	259249	broad.mit.edu	36	11	18912288	18912288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_147199	exon1	c.G620A	p.R207Q	.	.	.
PAX6	5080	broad.mit.edu	36	11	31768928	31768928	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127612	exon12	c.G1089A	p.S363S	.	.	.
OR52J3	119679	broad.mit.edu	36	11	5025153	5025153	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001916	exon1	c.C822G	p.H274Q	.	.	.
OR5M3	219482	broad.mit.edu	36	11	55994497	55994497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004742	exon1	c.G53A	p.R18H	.	.	.
PEX5	5830	broad.mit.edu	36	12	7234360	7234361	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001131023	exon2	c.120_121insC	p.W40fs	.	.	.
CUX2	23316	broad.mit.edu	36	12	110260478	110260478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015267	exon20	c.C3202T	p.R1068W	.	.	.
RNFT2	84900	broad.mit.edu	36	12	115756108	115756108	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032814	exon8	c.C1011T	p.I337I	.	.	.
TMEM132B	114795	broad.mit.edu	36	12	124704430	124704430	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052907	exon9	c.C2458T	p.R820C	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4606482	4606482	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006422	exon4	c.A1847C	p.K616T	.	.	.
CRYL1	51084	broad.mit.edu	36	13	19904377	19904377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015974	exon5	c.C497T	p.P166L	.	.	.
CDK8	1024	broad.mit.edu	36	13	25821304	25821304	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001260	exon3	c.T300A	p.A100A	.	.	.
NDRG2	57447	broad.mit.edu	36	14	20559857	20559857	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016250	exon6	c.C324T	p.D108D	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63539406	63539406	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015180	exon30	c.A4002G	p.T1334T	.	.	.
SIPA1L1	26037	broad.mit.edu	36	14	71125240	71125240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015556	exon2	c.C898T	p.R300C	.	.	.
OCA2	4948	broad.mit.edu	36	15	25943642	25943642	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000275	exon5	c.C517T	p.R173C	.	.	.
VPS18	57617	broad.mit.edu	36	15	38979685	38979685	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020857	exon4	c.G1377T	p.K459N	.	.	.
SLC28A2	9153	broad.mit.edu	36	15	43345119	43345119	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004212	exon9	c.A827G	p.Y276C	.	.	.
IGDCC3	9543	broad.mit.edu	36	15	63408310	63408310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004884	exon14	c.C2435T	p.S812L	.	.	.
CRAMP1L	57585	broad.mit.edu	36	16	1631141	1631141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020825	exon5	c.G779A	p.C260Y	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55646231	55646231	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032206	exon25	c.C3574T	p.R1192W	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56508833	56508833	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001297	exon21	c.G2006T	p.W669L	.	.	.
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G524A	p.R175H	 TP53,lung,NS,Substitution - Missense,0 	.	.
IER3IP1	51124	broad.mit.edu	36	18	42936582	42936582	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016097	exon3	c.C213T	p.N71N	.	.	.
CETN1	1068	broad.mit.edu	36	18	570537	570537	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004066	exon1	c.C129T	p.D43D	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7034818	7034818	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005559	exon7	c.G879C	p.E293D	.	.	.
NRAS	4893	broad.mit.edu	36	1	115060268	115060268	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002524	exon2	c.G37C	p.G13R	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-2 	.	.
PRAMEF4	400735	broad.mit.edu	36	1	12865629	12865629	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001009611	exon2	c.G174A	p.V58V	.	.	.
OR2M2	391194	broad.mit.edu	36	1	246410275	246410275	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004688	exon1	c.G365A	p.R122H	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43681926	43681926	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015284	exon47	c.G6000A	p.S2000S	.	.	.
NOL9	79707	broad.mit.edu	36	1	6533144	6533144	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024654	exon2	c.C515G	p.S172C	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51303512	51303512	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173485	exon2	c.C108T	p.S36S	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50619269	50619270	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004801	exon10	c.1769_1770insA	p.S590fs	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133352946	133352946	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207481	exon9	c.C593T	p.A198V	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165655502	165655502	+	Missense_Mutation	SNP	C	T	T	rs3731762	byCluster;byFrequency;byHapMap	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006922	exon28	c.G5407A	p.D1803N	.	.	.
HNRNPA3	220988	broad.mit.edu	36	2	177792054	177792054	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194247	exon9	c.T1005A	p.Y335X	.	.	.
SDPR	8436	broad.mit.edu	36	2	192408933	192408933	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004657	exon2	c.C1239T	p.P413P	.	.	.
MAP2	4133	broad.mit.edu	36	2	210267947	210267947	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002374	exon7	c.C2808T	p.S936S	.	.	.
APOB	338	broad.mit.edu	36	2	21091635	21091635	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000384	exon23	c.G3511A	p.E1171K	.	.	.
GTF3C2	2976	broad.mit.edu	36	2	27419271	27419271	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001035521	exon3	c.T495A	p.S165S	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148400181	148400183	+	In_Frame_Del	DEL	ATT	-	-	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	ATT	ATT	ATT	-	ATT	ATT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001616	exon10	c.1328_1330del	p.443_444del	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10051915	10051915	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033084	exon6	c.C436T	p.Q146X	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54761674	54761674	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018398	exon12	c.C1176A	p.I392I	.	.	.
ADH1B	125	broad.mit.edu	36	4	100456274	100456274	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000668	exon5	c.T371C	p.L124P	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176133720	176133720	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130705	exon3	c.A469G	p.K157E	.	.	.
APC	324	broad.mit.edu	36	5	112190728	112190729	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000038	exon12	c.1433_1434insA	p.L478fs	.	.	.
APC	324	broad.mit.edu	36	5	112203125	112203126	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000038	exon16	c.3935_3936insA	p.G1312fs	 APC,large_intestine,NS,Substitution - Nonsense,+1 	.	.
PCDHA9	9752	broad.mit.edu	36	5	140209399	140209399	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014005	exon1	c.G1135A	p.A379T	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140782635	140782635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018914	exon1	c.G1657A	p.V553M	.	.	.
NR3C1	2908	broad.mit.edu	36	5	142660418	142660418	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001018074	exon5	c.G1572A	p.T524T	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153058675	153058675	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114183	exon10	c.G1301A	p.R434H	.	.	.
MAPK9	5601	broad.mit.edu	36	5	179597992	179597992	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139070	exon11	c.G1078C	p.V360L	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35690570	35690570	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024867	exon7	c.C963T	p.A321A	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151711937	151711937	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005100	exon4	c.G718A	p.E240K	 AKAP12,large_intestine,colon,Substitution - Missense,0 	.	.
CRISP1	167	broad.mit.edu	36	6	49927769	49927769	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001131	exon3	c.C99T	p.L33L	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107359929	107359929	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002291	exon28	c.G4318A	p.A1440T	.	.	.
CFTR	1080	broad.mit.edu	36	7	116967605	116967605	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000492	exon8	c.A1085C	p.Y362S	.	.	.
MKLN1	4289	broad.mit.edu	36	7	130801679	130801679	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013255	exon15	c.A1893T	p.L631F	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146372007	146372007	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014141	exon4	c.C478T	p.R160C	.	.	.
NOM1	64434	broad.mit.edu	36	7	156435910	156435910	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138400	exon1	c.G718T	p.E240X	.	.	.
POM121	9883	broad.mit.edu	36	7	72051636	72051636	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172020	exon13	c.C2373T	p.A791A	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89687912	89687912	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178828	exon1	c.G286A	p.G96R	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36939287	36939287	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001013736	exon1	c.G2883C	p.K961N	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53588325	53588325	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A02F-01A-01W-A00E-09	TCGA-AA-A02F-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031407	exon72	c.G11172C	p.L3724F	.	.	.