Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
TCF7L2	6934	broad.mit.edu	36	10	114910438	114910438	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198526	exon12	c.C1320A	p.C440X	.	.	.
JAKMIP3	282973	broad.mit.edu	36	10	133781032	133781032	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105521	exon2	c.C597A	p.R199R	.	.	.
C10orf71	118461	broad.mit.edu	36	10	50202515	50202515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135196	exon3	c.G1919A	p.R640H	.	.	.
ZCCHC24	219654	broad.mit.edu	36	10	80816158	80816158	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153367	exon4	c.C675G	p.H225Q	.	.	.
C11orf65	160140	broad.mit.edu	36	11	107781420	107781420	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152587	exon6	c.G506A	p.R169K	.	.	.
OR4S2	219431	broad.mit.edu	36	11	55175737	55175737	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004059	exon1	c.C782T	p.T261M	.	.	.
MS4A7	58475	broad.mit.edu	36	11	59907308	59907308	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206938	exon2	c.G118A	p.G40R	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66218287	66218287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006946	exon21	c.G4402A	p.E1468K	.	.	.
STAB2	55576	broad.mit.edu	36	12	102651004	102651004	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017564	exon51	c.G5374T	p.A1792S	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128388218	128388218	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133448	exon4	c.T1213C	p.Y405H	.	.	.
SLC2A13	114134	broad.mit.edu	36	12	38551878	38551878	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052885	exon5	c.G1187A	p.G396D	.	.	.
ANKRD33	341405	broad.mit.edu	36	12	50569133	50569133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130015	exon3	c.G7A	p.A3T	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55709530	55709530	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005379	exon26	c.G2833A	p.V945I	.	.	.
FREM2	341640	broad.mit.edu	36	13	38352540	38352540	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207361	exon24	c.G9126T	p.K3042N	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69433457	69433457	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020866	exon3	c.C801G	p.V267V	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63656077	63656077	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015180	exon67	c.T13020C	p.D4340D	.	.	.
HCN4	10021	broad.mit.edu	36	15	71422999	71422999	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005477	exon2	c.C989T	p.P330L	.	.	.
FBXO22	26263	broad.mit.edu	36	15	74012385	74012385	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_147188	exon7	c.C1099T	p.R367W	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27596572	27596572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015202	exon7	c.C562T	p.L188F	.	.	.
IL32	9235	broad.mit.edu	36	16	3059163	3059163	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004221	exon7	c.G373A	p.G125R	.	.	.
IRX6	79190	broad.mit.edu	36	16	53918734	53918734	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024335	exon3	c.C329T	p.A110V	.	.	.
NIP7	51388	broad.mit.edu	36	16	67931243	67931243	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016101	exon1	c.T10G	p.L4V	.	.	.
SLC7A5	8140	broad.mit.edu	36	16	86424121	86424121	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003486	exon10	c.G1480A	p.V494I	.	.	.
MYH2	4620	broad.mit.edu	36	17	10381780	10381780	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001100112	exon15	c.A1514C	p.K505T	.	.	.
MYH3	4621	broad.mit.edu	36	17	10482094	10482094	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002470	exon26	c.G3720A	p.S1240S	.	.	.
ZNF286A	57335	broad.mit.edu	36	17	15560123	15560123	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130842	exon6	c.G360A	p.K120K	.	.	.
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G524A	p.R175H	 TP53,lung,NS,Substitution - Missense,0 	.	.
RNF152	220441	broad.mit.edu	36	18	57634661	57634661	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173557	exon2	c.16delC	p.Q6fs	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17614746	17614746	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001080421	exon19	c.G2380A	p.V794M	.	.	.
FAM187B	148109	broad.mit.edu	36	19	40410779	40410779	+	Silent	SNP	G	A	A	rs13382163	byHapMap	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152481	exon1	c.C645T	p.Y215Y	.	.	.
MARK4	57787	broad.mit.edu	36	19	50466724	50466724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001199867	exon8	c.C704T	p.P235L	.	.	.
SLC17A7	57030	broad.mit.edu	36	19	54625705	54625705	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020309	exon12	c.C1566T	p.S522S	.	.	.
MYH14	79784	broad.mit.edu	36	19	55486031	55486031	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077186	exon35	c.G4942A	p.E1648K	.	.	.
OR7G3	390883	broad.mit.edu	36	19	9098177	9098177	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001958	exon1	c.C450T	p.I150I	.	.	.
CD101	9398	broad.mit.edu	36	1	117361377	117361377	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004258	exon5	c.C1371T	p.P457P	.	.	.
THEM5	284486	broad.mit.edu	36	1	150090197	150090197	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182578	exon3	c.G420A	p.S140S	.	.	.
NPR1	4881	broad.mit.edu	36	1	151924095	151924095	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000906	exon8	c.G1516T	p.E506X	.	.	.
TBX19	9095	broad.mit.edu	36	1	166548794	166548794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005149	exon8	c.C1277T	p.S426L	.	.	.
DNM3	26052	broad.mit.edu	36	1	170157561	170157561	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015569	exon2	c.T212G	p.L71R	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171835911	171835911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178527	exon3	c.G196A	p.V66M	.	.	.
SNAP47	116841	broad.mit.edu	36	1	226002244	226002244	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_053052	exon2	c.C319T	p.H107Y	.	.	.
C8B	732	broad.mit.edu	36	1	57171744	57171744	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000066	exon10	c.G1404T	p.E468D	.	.	.
BRDT	676	broad.mit.edu	36	1	92202826	92202826	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207189	exon3	c.T247G	p.L83V	.	.	.
JAG1	182	broad.mit.edu	36	20	10568429	10568429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000214	exon26	c.C3374A	p.P1125H	.	.	.
JPH2	57158	broad.mit.edu	36	20	42222020	42222020	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020433	exon2	c.A821C	p.D274A	.	.	.
SLC12A5	57468	broad.mit.edu	36	20	44097509	44097509	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020708	exon3	c.C207T	p.T69T	.	.	.
RUNX1	861	broad.mit.edu	36	21	35153653	35153653	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001754	exon6	c.C601G	p.R201G	 RUNX1,haematopoietic_and_lymphoid_tissue,NS,Substitution - Nonsense,0 	.	.
MORC3	23515	broad.mit.edu	36	21	36639135	36639135	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015358	exon8	c.G941A	p.G314E	.	.	.
XBP1	7494	broad.mit.edu	36	22	27521393	27521393	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079539	exon6	c.G901A	p.V301M	.	.	.
TNRC6B	23112	broad.mit.edu	36	22	38991690	38991690	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015088	exon5	c.T1510C	p.S504P	.	.	.
CDC42EP1	11135	broad.mit.edu	36	22	36294355	36294375	+	In_Frame_Del	DEL	CAGCGCCTGCTGCAAACCCCT	-	-	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152243	exon3	c.758_778del	p.253_260del	.	.	.
C2orf62	375307	broad.mit.edu	36	2	218940822	218940823	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198559	exon10	c.1055_1056insC	p.G352fs	.	.	.
CHST10	9486	broad.mit.edu	36	2	100376525	100376525	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	A	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004854	exon7	c.C685T	p.R229W	.	.	.
LRP2	4036	broad.mit.edu	36	2	169710589	169710589	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004525	exon70	c.G12902A	p.G4301E	.	.	.
TTN	7273	broad.mit.edu	36	2	179191009	179191009	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003319	exon81	c.C20119A	p.R6707R	.	.	.
PUM2	23369	broad.mit.edu	36	2	20375648	20375648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015317	exon3	c.C178T	p.P60S	.	.	.
DYTN	391475	broad.mit.edu	36	2	207278795	207278795	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001093730	exon4	c.T344C	p.I115T	.	.	.
NAGK	55577	broad.mit.edu	36	2	71156277	71156277	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017567	exon7	c.G802A	p.E268K	.	.	.
TSGA10	80705	broad.mit.edu	36	2	99003213	99003213	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025244	exon18	c.G1779C	p.Q593H	.	.	.
WNT7A	7476	broad.mit.edu	36	3	13835615	13835615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004625	exon4	c.G877A	p.A293T	.	.	.
CEP70	80321	broad.mit.edu	36	3	139702079	139702079	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024491	exon15	c.T1389A	p.F463L	.	.	.
CTDSPL	10217	broad.mit.edu	36	3	37997268	37997268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005808	exon7	c.C704T	p.T235M	.	.	.
FLNB	2317	broad.mit.edu	36	3	58109029	58109029	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164317	exon36	c.G5878T	p.D1960Y	.	.	.
FRMD4B	23150	broad.mit.edu	36	3	69434245	69434245	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015123	exon4	c.C355T	p.R119X	.	.	.
ANK2	287	broad.mit.edu	36	4	114499896	114499896	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001148	exon38	c.A10673T	p.H3558L	.	.	.
CCNA2	890	broad.mit.edu	36	4	122961321	122961321	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001237	exon4	c.C620G	p.T207S	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155456525	155456525	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017639	exon15	c.G3720A	p.L1240L	.	.	.
TRIML1	339976	broad.mit.edu	36	4	189305096	189305096	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178556	exon6	c.C983T	p.A328V	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96359438	96359438	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003728	exon9	c.A1350C	p.R450S	.	.	.
APC	324	broad.mit.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C3286T	p.R1096X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
PSD2	84249	broad.mit.edu	36	5	139202122	139202122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032289	exon15	c.G2195A	p.R732Q	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161264	140161264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031497	exon1	c.G298A	p.A100T	.	.	.
PCDHA7	56141	broad.mit.edu	36	5	140196151	140196151	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018910	exon1	c.G1999T	p.V667L	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140533550	140533550	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018940	exon1	c.T950C	p.L317S	.	.	.
HTR4	3360	broad.mit.edu	36	5	147811021	147811021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040169	exon6	c.G1084A	p.V362I	.	.	.
SGCD	6444	broad.mit.edu	36	5	156118951	156118951	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000337	exon9	c.G845T	p.C282F	.	.	.
FASTKD3	79072	broad.mit.edu	36	5	7920378	7920378	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024091	exon2	c.C819G	p.H273Q	.	.	.
SLC22A16	85413	broad.mit.edu	36	6	110874853	110874853	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033125	exon3	c.C567A	p.S189R	.	.	.
HIST1H2BF	8343	broad.mit.edu	36	6	26307867	26307867	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003522	exon1	c.C102T	p.R34R	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51998706	51998706	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170724	exon32	c.G3861A	p.V1287V	.	.	.
SNX13	23161	broad.mit.edu	36	7	17881931	17881931	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015132	exon6	c.G448T	p.E150X	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70768511	70768511	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022479	exon7	c.G1260A	p.P420P	.	.	.
PCLO	27445	broad.mit.edu	36	7	82417495	82417495	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033026	exon6	c.G10345A	p.D3449N	.	.	.
IKBKB	3551	broad.mit.edu	36	8	42293523	42293523	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001190722	exon11	c.G1069T	p.A357S	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77938435	77938435	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024721	exon11	c.G9930T	p.L3310L	.	.	.
TNC	3371	broad.mit.edu	36	9	116892882	116892882	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002160	exon2	c.G237A	p.P79P	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18674799	18674799	+	Splice_Site	SNP	G	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052866	exon13	c.G1575C	p.S525S	.	.	.
KCNV2	169522	broad.mit.edu	36	9	2707857	2707857	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133497	exon1	c.C118T	p.Q40X	.	.	.
DNAJB5	25822	broad.mit.edu	36	9	34983435	34983435	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135005	exon2	c.G421A	p.E141K	.	.	.
CEP78	84131	broad.mit.edu	36	9	80056697	80056697	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001098802	exon9	c.G1126A	p.E376K	.	.	.
SHC3	53358	broad.mit.edu	36	9	90842746	90842746	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016848	exon11	c.C1638G	p.L546L	.	.	.
TSTD2	158427	broad.mit.edu	36	9	99404802	99404802	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139246	exon10	c.G1321A	p.V441I	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140812980	140812980	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_177456	exon5	c.A876T	p.R292S	.	.	.
DMD	1756	broad.mit.edu	36	X	32290968	32290968	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004011	exon9	c.G1160A	p.R387H	.	.	.
KAL1	3730	broad.mit.edu	36	X	8498695	8498695	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000216	exon7	c.G907A	p.V303I	.	.	.
CPXCR1	53336	broad.mit.edu	36	X	87895304	87895304	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A01T-01A-21W-A096-10	TCGA-AA-A01T-11A-11W-A096-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001184771	exon3	c.A233T	p.K78I	.	.	.