Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target CYP2E1 1571 hgsc.bcm.edu 36 10 135200665 135200665 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_000773 exon7 c.G1076A p.R359Q . . . CHAT 1103 hgsc.bcm.edu 36 10 50524621 50524621 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001142929 exon8 c.G822A p.A274A . . . KIAA1279 26128 hgsc.bcm.edu 36 10 70435532 70435532 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_015634 exon4 c.C644T p.A215V . . . KIF20B 9585 hgsc.bcm.edu 36 10 91501148 91501148 + Missense_Mutation SNP C C G novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_016195 exon24 c.C4042G p.Q1348E . . . HTR3A 3359 hgsc.bcm.edu 36 11 113365588 113365588 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_000869 exon9 c.C1348T p.R450C . . . MLL 4297 hgsc.bcm.edu 36 11 117877041 117877041 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_005933 exon25 c.G6279T p.R2093S . . . ILK 3611 hgsc.bcm.edu 36 11 6587156 6587156 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_004517 exon8 c.G669A p.K223K . . . INPPL1 3636 hgsc.bcm.edu 36 11 71619815 71619815 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001567 exon12 c.C1431T p.G477G . . . IPO7 10527 hgsc.bcm.edu 36 11 9413060 9413060 + Missense_Mutation SNP T T C novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_006391 exon19 c.T2078C p.M693T . . . KRAS 3845 hgsc.bcm.edu 36 12 25269914 25269914 + Missense_Mutation SNP T T G novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_004985 exon4 c.A351C p.K117N KRAS,large_intestine,NS,Substitution - Missense,0 . . CLEC4D 338339 hgsc.bcm.edu 36 12 8564179 8564179 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_080387 exon5 c.C475A p.Q159K . . . PARP4 143 hgsc.bcm.edu 36 13 23927207 23927207 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_006437 exon22 c.G2706A p.A902A . . . POLR1D 51082 hgsc.bcm.edu 36 13 27138029 27138029 + Missense_Mutation SNP A A G novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_152705 exon3 c.A308G p.Y103C . . . POSTN 10631 hgsc.bcm.edu 36 13 37052705 37052705 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001135934 exon11 c.C1522T p.R508C . . . SALL2 6297 hgsc.bcm.edu 36 14 21062476 21062476 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_005407 exon2 c.G1226A p.R409H . . . DUOX2 50506 hgsc.bcm.edu 36 15 43176847 43176847 + Missense_Mutation SNP A A C novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_014080 exon29 c.T3728G p.L1243R . . . GABPB1 2553 hgsc.bcm.edu 36 15 48358264 48358264 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_005254 exon9 c.G1045T p.A349S . . . ABHD2 11057 hgsc.bcm.edu 36 15 87539526 87539526 + Silent SNP C C A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_152924 exon11 c.C1146A p.G382G . . . IL4R 3566 hgsc.bcm.edu 36 16 27274697 27274697 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_000418 exon8 c.C738T p.A246A . . . ADAMTS18 170692 hgsc.bcm.edu 36 16 75947429 75947429 + Nonsense_Mutation SNP C C A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_199355 exon9 c.G1369T p.E457X . . . KRT37 8688 hgsc.bcm.edu 36 17 36833948 36833948 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_003770 exon1 c.C354T p.Y118Y . . . CDC27 996 hgsc.bcm.edu 36 17 42589628 42589628 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001114091 exon6 c.G597A p.E199E . . . ABCA10 10349 hgsc.bcm.edu 36 17 64689925 64689925 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_080282 exon23 c.G2733A p.T911T . . . TP53 7157 hgsc.bcm.edu 36 17 7519131 7519131 + Missense_Mutation SNP C C T rs28934578 unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001126114 exon5 c.G524A p.R175H TP53,lung,NS,Substitution - Missense,0 . . ADAM11 4185 hgsc.bcm.edu 36 17 40210083 40210083 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_002390 exon21 c.G1705A p.E569K . . . MBD3 53615 hgsc.bcm.edu 36 19 1532173 1532173 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_003926 exon5 c.G595A p.A199T . . . ZNF536 9745 hgsc.bcm.edu 36 19 35731646 35731646 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_014717 exon4 c.G3280A p.G1094S . . . PNMAL1 55228 hgsc.bcm.edu 36 19 51666062 51666062 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_018215 exon2 c.C71T p.S24F . . . SLC17A7 57030 hgsc.bcm.edu 36 19 54628862 54628862 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_020309 exon7 c.C800T p.S267L . . . NLRP7 199713 hgsc.bcm.edu 36 19 60143394 60143394 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_139176 exon4 c.C605T p.P202L . . . VAV1 7409 hgsc.bcm.edu 36 19 6780915 6780915 + Nonsense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_005428 exon14 c.C1384T p.R462X . . . SPAG17 200162 hgsc.bcm.edu 36 1 118338587 118338587 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_206996 exon35 c.C5143T p.R1715W . . . TNN 63923 hgsc.bcm.edu 36 1 173364445 173364445 + Silent SNP C C T rs61740198 unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_022093 exon15 c.C3270T p.G1090G . . . PABPC4 8761 hgsc.bcm.edu 36 1 39807105 39807105 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001135653 exon6 c.C832T p.R278W . . . GPBP1L1 60313 hgsc.bcm.edu 36 1 45893550 45893550 + Missense_Mutation SNP C C G novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_021639 exon5 c.G89C p.G30A . . . TAS1R1 80835 hgsc.bcm.edu 36 1 6559163 6559163 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_177540 exon3 c.G600T p.W200C . . . DDX27 55661 hgsc.bcm.edu 36 20 47293603 47293603 + Silent SNP C C A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_017895 exon20 c.C2328A p.G776G . . . EP300 2033 hgsc.bcm.edu 36 22 39853675 39853675 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001429 exon4 c.G1145A p.C382Y . . . ACSL3 2181 hgsc.bcm.edu 36 2 223514494 223514494 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_004457 exon17 c.C2041T p.R681C . . . HTR2B 3357 hgsc.bcm.edu 36 2 231682229 231682229 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_000867 exon4 c.C692A p.A231E . . . FAM98A 25940 hgsc.bcm.edu 36 2 33663941 33663941 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_015475 exon8 c.G963A p.P321P . . . GPR17 2840 hgsc.bcm.edu 36 2 128125483 128125483 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_005291 exon3 c.G788A p.R263H . . . CCDC80 151887 hgsc.bcm.edu 36 3 113841142 113841142 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_199511 exon2 c.G301A p.A101T . . . DGKG 1608 hgsc.bcm.edu 36 3 187472762 187472762 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001080744 exon11 c.C975T p.Y325Y . . . STAC 6769 hgsc.bcm.edu 36 3 36397220 36397220 + Silent SNP T T C novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 T T . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_003149 exon1 c.T81C p.S27S . . . CADPS 8618 hgsc.bcm.edu 36 3 62545939 62545939 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_183393 exon8 c.C1538A p.A513D . . . C4orf18 51313 hgsc.bcm.edu 36 4 159311631 159311631 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001128424 exon2 c.G347A p.S116N . . . SLC34A2 10568 hgsc.bcm.edu 36 4 25287079 25287079 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001177999 exon13 c.C1680T p.P560P . . . ADD1 118 hgsc.bcm.edu 36 4 2847576 2847576 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001119 exon2 c.C136T p.R46C . . . FBN2 2201 hgsc.bcm.edu 36 5 127650411 127650411 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001999 exon55 c.G6910A p.D2304N . . . PCDHA13 56136 hgsc.bcm.edu 36 5 140243429 140243429 + Silent SNP G G T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_031865 exon1 c.G1392T p.V464V . . . PCDH24 54825 hgsc.bcm.edu 36 5 175944093 175944093 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001171976 exon19 c.G2205A p.S735S . . . CDH18 1016 hgsc.bcm.edu 36 5 19627016 19627016 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_004934 exon7 c.C906T p.D302D . . . C9 735 hgsc.bcm.edu 36 5 39344139 39344139 + Missense_Mutation SNP C C A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001737 exon8 c.G1190T p.G397V . . . DAB2 1601 hgsc.bcm.edu 36 5 39418847 39418847 + Nonsense_Mutation SNP G G T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001343 exon10 c.C971A p.S324X . . . MAP1B 4131 hgsc.bcm.edu 36 5 71525690 71525690 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_005909 exon5 c.C752T p.S251L . . . THBS2 7058 hgsc.bcm.edu 36 6 169367232 169367232 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_003247 exon18 c.C2706T p.N902N . . . HIST1H3C 8352 hgsc.bcm.edu 36 6 26153633 26153633 + Missense_Mutation SNP C C G novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_003531 exon1 c.C16G p.Q6E . . . BAI3 577 hgsc.bcm.edu 36 6 69405877 69405877 + Missense_Mutation SNP A A T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001704 exon3 c.A589T p.T197S . . . EPHA1 2041 hgsc.bcm.edu 36 7 142798940 142798940 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_005232 exon17 c.G2747A p.R916Q . . . SEMA3E 9723 hgsc.bcm.edu 36 7 82859876 82859876 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_012431 exon14 c.G1598A p.R533Q . . . ABCB4 5244 hgsc.bcm.edu 36 7 86921828 86921828 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_018849 exon5 c.G303A p.S101S . . . TMEM130 222865 hgsc.bcm.edu 36 7 98298847 98298847 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001134450 exon2 c.C198T p.D66D . . . COL22A1 169044 hgsc.bcm.edu 36 8 139803473 139803473 + Silent SNP C C A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_152888 exon26 c.G2289T p.P763P . . . ADHFE1 137872 hgsc.bcm.edu 36 8 67535109 67535109 + Missense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_144650 exon13 c.G1175A p.R392H . . . CNGB3 54714 hgsc.bcm.edu 36 8 87714208 87714208 + Missense_Mutation SNP C C G novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_019098 exon11 c.G1208C p.R403P . . . SLC26A7 115111 hgsc.bcm.edu 36 8 92421941 92421941 + Missense_Mutation SNP A A T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_134266 exon8 c.A1012T p.I338F . . . GRIN3A 116443 hgsc.bcm.edu 36 9 103425515 103425515 + Silent SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_133445 exon5 c.C2520T p.D840D . . . NIPSNAP3A 25934 hgsc.bcm.edu 36 9 106553222 106553222 + Silent SNP A A C novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 A A . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_015469 exon2 c.A225C p.V75V . . . COL27A1 85301 hgsc.bcm.edu 36 9 116111502 116111502 + Missense_Mutation SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_032888 exon60 c.C5359T p.R1787C . . . COL5A1 1289 hgsc.bcm.edu 36 9 136800121 136800121 + Silent SNP C C T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_000093 exon25 c.C2277T p.D759D . . . SH3GL2 6456 hgsc.bcm.edu 36 9 17776392 17776392 + Missense_Mutation SNP G G T novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_003026 exon4 c.G201T p.K67N . . . OGT 8473 hgsc.bcm.edu 36 X 70691809 70691810 + Frame_Shift_Ins INS - - CC novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 - - - CC - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_181673 exon7 c.743_744insCC p.H248fs . . . KLHL13 90293 hgsc.bcm.edu 36 X 116927337 116927337 + Nonsense_Mutation SNP C C A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 C C . . . . Unknown Unknown Somatic Phase_I Capture . SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001168300 exon5 c.G1303T p.G435X . . . EDA2R 60401 hgsc.bcm.edu 36 X 65741066 65741066 + Nonsense_Mutation SNP G G A novel unknown TCGA-AA-A01G-01A-01W-A005-10 TCGA-AA-A01G-10A-01W-A005-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA SOLID dfa93420-7755-4ba2-bb1e-f7ca904294b0 4193ced3-31b3-48f4-b489-85c1dddc0c22 NM_001199687 exon4 c.C274T p.R92X . . .