Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
MKX	283078	hgsc.bcm.edu	36	10	28064278	28064278	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_173576	exon4	c.G380A	p.R127Q	.	.	.
PVRL1	5818	hgsc.bcm.edu	36	11	119053591	119053591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_002855	exon3	c.C617T	p.T206M	.	.	.
USP44	84101	hgsc.bcm.edu	36	12	94451207	94451207	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001042403	exon2	c.A957G	p.R319R	 USP44,lung,NS,Substitution - Missense,-1 	.	.
MBTPS1	8720	hgsc.bcm.edu	36	16	82690312	82690312	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_003791	exon3	c.C268T	p.R90X	.	.	.
ADORA2B	136	hgsc.bcm.edu	36	17	15819128	15819128	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_000676	exon2	c.C746T	p.P249L	.	.	.
GSDMB	55876	hgsc.bcm.edu	36	17	35319657	35319657	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001042471	exon4	c.A454G	p.R152G	.	.	.
KIAA0195	9772	hgsc.bcm.edu	36	17	70994074	70994074	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_014738	exon5	c.G381T	p.R127S	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518264	7518264	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001126114	exon7	c.C742T	p.R248W	 TP53,haematopoietic_and_lymphoid_tissue,lymph_node,Substitution - Missense,+1 	.	.
BZRAP1	9256	hgsc.bcm.edu	36	17	53740065	53740065	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_004758	exon24	c.T4889A	p.F1630Y	.	.	.
ZNF616	90317	hgsc.bcm.edu	36	19	57310378	57310378	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_178523	exon4	c.C1851T	p.G617G	.	.	.
ABL2	27	hgsc.bcm.edu	36	1	177344152	177344152	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001168239	exon12	c.T2456G	p.F819C	.	.	.
MRTO4	51154	hgsc.bcm.edu	36	1	19457794	19457794	+	Silent	SNP	G	G	A	rs41367945	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_016183	exon8	c.G603A	p.K201K	.	.	.
LRRC7	57554	hgsc.bcm.edu	36	1	70277408	70277408	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_020794	exon19	c.G3199A	p.A1067T	.	.	.
C1orf173	127254	hgsc.bcm.edu	36	1	74870028	74870028	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001002912	exon7	c.G776A	p.R259H	.	.	.
RBM39	9584	hgsc.bcm.edu	36	20	33776001	33776001	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_004902	exon8	c.T592C	p.Y198H	.	.	.
DHX57	90957	hgsc.bcm.edu	36	2	38923816	38923827	+	In_Frame_Del	DEL	TCATGGACCGCA	TCATGGACCGCA	-	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	TCATGGACCGCA	TCATGGACCGCA	TCATGGACCGCA	-	TCATGGACCGCA	TCATGGACCGCA	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_198963	exon12	c.2249_2260del	p.750_754del	.	.	.
UROC1	131669	hgsc.bcm.edu	36	3	127694001	127694001	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_144639	exon16	c.G1558A	p.V520M	.	.	.
B3GALNT1	8706	hgsc.bcm.edu	36	3	162286426	162286426	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_033168	exon4	c.G811A	p.G271R	.	.	.
AGXT2L1	64850	hgsc.bcm.edu	36	4	109897062	109897062	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001146627	exon3	c.G197A	p.R66Q	.	.	.
APC	324	hgsc.bcm.edu	36	5	112201816	112201816	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001127511	exon14	c.C2572T	p.R858X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
PHAX	51808	hgsc.bcm.edu	36	5	125964571	125964571	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_032177	exon1	c.C18T	p.G6G	.	.	.
FAT2	2196	hgsc.bcm.edu	36	5	150928638	150928638	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001447	exon1	c.G48A	p.A16A	.	.	.
ACOT12	134526	hgsc.bcm.edu	36	5	80679423	80679423	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_130767	exon6	c.T579C	p.H193H	.	.	.
KCNQ5	56479	hgsc.bcm.edu	36	6	73961724	73961724	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_001160133	exon15	c.G2722A	p.A908T	.	.	.
C7orf31	136895	hgsc.bcm.edu	36	7	25185337	25185337	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_138811	exon2	c.C116T	p.P39L	.	.	.
ADCY1	107	hgsc.bcm.edu	36	7	45692792	45692792	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_021116	exon14	c.G2449A	p.A817T	.	.	.
PTPRZ1	5803	hgsc.bcm.edu	36	7	121478743	121478744	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_002851	exon24	c.6110_6111del	p.2037_2037del	.	.	.
BNIP3L	665	hgsc.bcm.edu	36	8	26321463	26321463	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_004331	exon4	c.G388A	p.E130K	.	.	.
FAM47A	158724	hgsc.bcm.edu	36	X	34059965	34059965	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00W-01A-01W-A005-10	TCGA-AA-A00W-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	ce7efe61-472a-4eb1-aa19-df598ee85254	4be6cc32-fd01-45ad-8ffd-c15e1b579ba0	NM_203408	exon1	c.G352A	p.V118I	.	.	.