Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ADRA2A	150	hgsc.bcm.edu	36	10	112828952	112828953	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000681	exon1	c.1208_1209insC	p.F403fs	.	.	.
MASTL	84930	hgsc.bcm.edu	36	10	27499061	27499062	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032844	exon8	c.1167_1168insA	p.A389fs	.	.	.
SLC16A9	220963	hgsc.bcm.edu	36	10	61102551	61102552	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_194298	exon3	c.323_324insT	p.S108fs	.	.	.
CHUK	1147	hgsc.bcm.edu	36	10	101940620	101940620	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001278	exon20	c.T2204C	p.M735T	.	.	.
PPRC1	23082	hgsc.bcm.edu	36	10	103898978	103898978	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015062	exon13	c.T4793C	p.I1598T	.	.	.
NOLC1	9221	hgsc.bcm.edu	36	10	103909009	103909009	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004741	exon6	c.G677A	p.S226N	.	.	.
CNNM2	54805	hgsc.bcm.edu	36	10	104677127	104677127	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_199077	exon2	c.T1657C	p.X553R	.	.	.
ITPRIP	85450	hgsc.bcm.edu	36	10	106064854	106064854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_033397	exon3	c.G946A	p.A316T	.	.	.
SORCS3	22986	hgsc.bcm.edu	36	10	106966793	106966793	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014978	exon19	c.C2657T	p.A886V	.	.	.
TACC2	10579	hgsc.bcm.edu	36	10	123960973	123960973	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006997	exon3	c.A1277G	p.N426S	.	.	.
BCCIP	56647	hgsc.bcm.edu	36	10	127512343	127512343	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016567	exon6	c.G612A	p.A204A	.	.	.
MKI67	4288	hgsc.bcm.edu	36	10	129803682	129803682	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002417	exon7	c.A980G	p.Q327R	.	.	.
FAM171A1	221061	hgsc.bcm.edu	36	10	15303023	15303023	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001010924	exon6	c.G797A	p.G266D	.	.	.
GAD2	2572	hgsc.bcm.edu	36	10	26621916	26621916	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001134366	exon15	c.G1574A	p.R525H	.	.	.
BMS1	9790	hgsc.bcm.edu	36	10	42608008	42608008	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014753	exon7	c.T841C	p.S281P	.	.	.
PRKG1	5592	hgsc.bcm.edu	36	10	53718550	53718550	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006258	exon15	c.G1768A	p.D590N	.	.	.
ZNF365	22891	hgsc.bcm.edu	36	10	63829430	63829430	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014951	exon5	c.C1100T	p.A367V	.	.	.
PBLD	64081	hgsc.bcm.edu	36	10	69713976	69713976	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022129	exon10	c.T831C	p.G277G	.	.	.
PCDH21	92211	hgsc.bcm.edu	36	10	85947530	85947530	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001171971	exon4	c.T306C	p.D102D	.	.	.
NOC3L	64318	hgsc.bcm.edu	36	10	96102675	96102675	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022451	exon7	c.C826T	p.R276W	.	.	.
NOC3L	64318	hgsc.bcm.edu	36	10	96106934	96106934	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022451	exon4	c.T495C	p.T165T	.	.	.
HELLS	3070	hgsc.bcm.edu	36	10	96340496	96340496	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018063	exon15	c.T1740C	p.P580P	.	.	.
TMEM135	65084	hgsc.bcm.edu	36	11	86456466	86456467	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001168724	exon2	c.224_225insA	p.L75fs	.	.	.
TRPC6	7225	hgsc.bcm.edu	36	11	100852283	100852283	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004621	exon6	c.C1703T	p.T568M	.	.	.
CRTAM	56253	hgsc.bcm.edu	36	11	122227642	122227642	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_019604	exon3	c.T225G	p.H75Q	.	.	.
MYOD1	4654	hgsc.bcm.edu	36	11	17698010	17698010	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002478	exon1	c.C105T	p.F35F	.	.	.
KCNC1	3746	hgsc.bcm.edu	36	11	17714301	17714301	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004976	exon1	c.G176A	p.R59H	.	.	.
SLC6A5	9152	hgsc.bcm.edu	36	11	20616608	20616608	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004211	exon13	c.G1897A	p.D633N	.	.	.
METT5D1	196074	hgsc.bcm.edu	36	11	28189314	28189314	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152636	exon4	c.T400C	p.L134L	.	.	.
ACCS	84680	hgsc.bcm.edu	36	11	44057681	44057681	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032592	exon10	c.T858C	p.D286D	.	.	.
NR1H3	10062	hgsc.bcm.edu	36	11	47237361	47237361	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005693	exon2	c.G18A	p.G6G	.	.	.
SLC43A3	29015	hgsc.bcm.edu	36	11	56931904	56931904	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_199329	exon14	c.C1413T	p.F471F	.	.	.
PGA5	5222	hgsc.bcm.edu	36	11	60773742	60773742	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014224	exon7	c.G799A	p.A267T	.	.	.
VWCE	220001	hgsc.bcm.edu	36	11	60789186	60789186	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152718	exon17	c.C2040T	p.C680C	.	.	.
FEN1	2237	hgsc.bcm.edu	36	11	61320035	61320035	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004111	exon2	c.T626C	p.L209P	.	.	.
BEST1	7439	hgsc.bcm.edu	36	11	61486668	61486668	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004183	exon10	c.T1466C	p.L489P	.	.	.
FAM160A2	84067	hgsc.bcm.edu	36	11	6196563	6196563	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032127	exon8	c.T1278C	p.L426L	.	.	.
MARK2	2011	hgsc.bcm.edu	36	11	63419302	63419302	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_017490	exon2	c.T51A	p.I17I	.	.	.
PLCB3	5331	hgsc.bcm.edu	36	11	63787574	63787574	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001184883	exon18	c.G2183A	p.R728H	.	.	.
TPP1	1200	hgsc.bcm.edu	36	11	6594804	6594804	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000391	exon6	c.A665T	p.N222I	.	.	.
CPT1A	1374	hgsc.bcm.edu	36	11	68285603	68285603	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001031847	exon16	c.T2004G	p.A668A	.	.	.
FOLR1	2348	hgsc.bcm.edu	36	11	71584718	71584718	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016724	exon6	c.G623A	p.R208H	.	.	.
ST5	6764	hgsc.bcm.edu	36	11	8695873	8695873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005418	exon8	c.G1620A	p.P540P	.	.	.
NAALAD2	10003	hgsc.bcm.edu	36	11	89541789	89541789	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005467	exon12	c.C1323G	p.N441K	.	.	.
PANX1	24145	hgsc.bcm.edu	36	11	93526419	93526419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015368	exon2	c.G296A	p.G99E	.	.	.
KDM4D	55693	hgsc.bcm.edu	36	11	94370324	94370324	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018039	exon3	c.G140A	p.G47D	.	.	.
MTMR2	8898	hgsc.bcm.edu	36	11	95209119	95209119	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_201278	exon16	c.T1395C	p.T465T	.	.	.
SFRS2IP	9169	hgsc.bcm.edu	36	12	44606748	44606749	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004719	exon11	c.3003_3004insA	p.N1001fs	.	.	.
NDUFA12	55967	hgsc.bcm.edu	36	12	93921504	93921505	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018838	exon1	c.84_85insT	p.F28fs	.	.	.
ANO4	121601	hgsc.bcm.edu	36	12	100029587	100029587	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_178826	exon23	c.A2313G	p.G771G	.	.	.
CCDC60	160777	hgsc.bcm.edu	36	12	118453109	118453109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_178499	exon13	c.G1409A	p.R470H	.	.	.
CIT	11113	hgsc.bcm.edu	36	12	118636499	118636499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_007174	exon32	c.C4066T	p.R1356C	.	.	.
MANSC1	54682	hgsc.bcm.edu	36	12	12374424	12374424	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018050	exon4	c.C1100T	p.S367F	.	.	.
GSG1	83445	hgsc.bcm.edu	36	12	13129408	13129408	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001080554	exon7	c.G907A	p.G303S	.	.	.
ZNF140	7699	hgsc.bcm.edu	36	12	132192272	132192272	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003440	exon5	c.T336C	p.P112P	.	.	.
ARHGDIB	397	hgsc.bcm.edu	36	12	14994769	14994769	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001175	exon2	c.A145G	p.K49E	.	.	.
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
RASSF8	11228	hgsc.bcm.edu	36	12	26108797	26108797	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_007211	exon4	c.A203C	p.Q68P	.	.	.
FAR2	55711	hgsc.bcm.edu	36	12	29361190	29361190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018099	exon9	c.C1105T	p.R369W	.	.	.
IPO8	10526	hgsc.bcm.edu	36	12	30720728	30720728	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006390	exon6	c.C700T	p.R234X	.	.	.
PDZRN4	29951	hgsc.bcm.edu	36	12	40247961	40247961	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001164595	exon9	c.T1577C	p.V526A	.	.	.
AMIGO2	347902	hgsc.bcm.edu	36	12	45757759	45757759	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_181847	exon2	c.A1294G	p.K432E	.	.	.
ERBB3	2065	hgsc.bcm.edu	36	12	54765121	54765121	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001005915	exon3	c.G310T	p.V104L	 ERBB3,ovary,NS,Substitution - Missense,0 	.	.
LRIG3	121227	hgsc.bcm.edu	36	12	57570720	57570720	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_153377	exon4	c.A509C	p.K170T	.	.	.
LRRIQ1	84125	hgsc.bcm.edu	36	12	83974944	83974944	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032165	exon8	c.T2242C	p.S748P	.	.	.
USP44	84101	hgsc.bcm.edu	36	12	94442588	94442588	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001042403	exon4	c.A1732G	p.R578G	.	.	.
EFNB2	1948	hgsc.bcm.edu	36	13	105943497	105943497	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004093	exon5	c.C894T	p.S298S	.	.	.
MYO16	23026	hgsc.bcm.edu	36	13	108575546	108575546	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001198950	exon30	c.G3621T	p.L1207L	.	.	.
TUBA3C	7278	hgsc.bcm.edu	36	13	18646202	18646202	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006001	exon5	c.C1154T	p.A385V	.	.	.
EFHA1	221154	hgsc.bcm.edu	36	13	20965402	20965402	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152726	exon12	c.A1291G	p.K431E	.	.	.
SPATA13	221178	hgsc.bcm.edu	36	13	23769756	23769756	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001166271	exon11	c.G3466A	p.V1156I	.	.	.
KL	9365	hgsc.bcm.edu	36	13	32536073	32536073	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004795	exon5	c.A2789G	p.Y930C	.	.	.
SETDB2	83852	hgsc.bcm.edu	36	13	48933249	48933249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001160308	exon3	c.T158C	p.M53T	.	.	.
KPNA3	3839	hgsc.bcm.edu	36	13	49194674	49194674	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002267	exon8	c.C496T	p.L166F	.	.	.
ALG11	440138	hgsc.bcm.edu	36	13	51496603	51496603	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001004127	exon3	c.C736A	p.L246I	.	.	.
PCDH17	27253	hgsc.bcm.edu	36	13	57106005	57106005	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001040429	exon1	c.A1324G	p.I442V	.	.	.
PCDH17	27253	hgsc.bcm.edu	36	13	57106074	57106074	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001040429	exon1	c.G1393A	p.E465K	.	.	.
ATP11A	23250	hgsc.bcm.edu	36	13	112508574	112508576	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	TCT	TCT	TCT	-	TCT	TCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015205	exon4	c.299_301del	p.100_101del	.	.	.
AP1G2	8906	hgsc.bcm.edu	36	14	23105367	23105367	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003917	exon4	c.A431G	p.E144G	.	.	.
TM9SF1	10548	hgsc.bcm.edu	36	14	23731343	23731343	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001014842	exon4	c.T1027C	p.S343P	.	.	.
CHMP4A	29082	hgsc.bcm.edu	36	14	23750547	23750547	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014169	exon3	c.G402A	p.E134E	.	.	.
ADCY4	196883	hgsc.bcm.edu	36	14	23857499	23857499	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001198592	exon26	c.T3197C	p.L1066S	.	.	.
AKAP6	9472	hgsc.bcm.edu	36	14	32360649	32360649	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004274	exon13	c.T3879C	p.N1293N	.	.	.
PPP2R3C	55012	hgsc.bcm.edu	36	14	34655569	34655569	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_017917	exon2	c.A184G	p.R62G	.	.	.
SOS2	6655	hgsc.bcm.edu	36	14	49654992	49654992	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006939	exon23	c.A3819G	p.R1273R	.	.	.
SOS2	6655	hgsc.bcm.edu	36	14	49655216	49655216	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006939	exon23	c.C3595T	p.P1199S	.	.	.
MTHFD1	4522	hgsc.bcm.edu	36	14	63978603	63978603	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005956	exon20	c.G1963A	p.A655T	.	.	.
SIPA1L1	26037	hgsc.bcm.edu	36	14	71125379	71125379	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015556	exon2	c.C1037T	p.A346V	.	.	.
WDR21A	26094	hgsc.bcm.edu	36	14	72488335	72488335	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_181341	exon7	c.C622T	p.P208S	.	.	.
HEATR4	399671	hgsc.bcm.edu	36	14	73059059	73059059	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_203309	exon2	c.A410G	p.N137S	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	79234019	79234019	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_138970	exon4	c.A895G	p.T299A	.	.	.
STON2	85439	hgsc.bcm.edu	36	14	80932073	80932073	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_033104	exon2	c.G291A	p.S97S	.	.	.
GPR65	8477	hgsc.bcm.edu	36	14	87547769	87547769	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003608	exon2	c.G825T	p.T275T	.	.	.
TTC8	123016	hgsc.bcm.edu	36	14	88407748	88407748	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_198309	exon11	c.A1122G	p.E374E	.	.	.
TARSL2	123283	hgsc.bcm.edu	36	15	100041845	100041845	+	Missense_Mutation	SNP	G	G	A	rs34201431	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152334	exon12	c.C1606T	p.R536C	.	.	.
GPR176	11245	hgsc.bcm.edu	36	15	37881437	37881437	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_007223	exon3	c.C736T	p.R246W	.	.	.
CDAN1	146059	hgsc.bcm.edu	36	15	40807250	40807250	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_138477	exon23	c.G2957T	p.R986M	.	.	.
GALK2	2585	hgsc.bcm.edu	36	15	47371847	47371847	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002044	exon8	c.A788G	p.D263G	.	.	.
GCOM1	145781	hgsc.bcm.edu	36	15	55701106	55701106	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152451	exon4	c.C327T	p.A109A	.	.	.
SLTM	79811	hgsc.bcm.edu	36	15	56969788	56969788	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024755	exon15	c.G2063A	p.R688H	.	.	.
ZWILCH	55055	hgsc.bcm.edu	36	15	64598381	64598381	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_017975	exon5	c.A431G	p.D144G	.	.	.
LARP6	55323	hgsc.bcm.edu	36	15	68911986	68911986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018357	exon3	c.C935T	p.A312V	.	.	.
PTPN9	5780	hgsc.bcm.edu	36	15	73585309	73585309	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002833	exon7	c.G730A	p.A244T	.	.	.
ALPK3	57538	hgsc.bcm.edu	36	15	83184459	83184459	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020778	exon5	c.G1551A	p.K517K	.	.	.
UNC45A	55898	hgsc.bcm.edu	36	15	89284671	89284671	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001039675	exon9	c.T606C	p.R202R	.	.	.
ATF7IP2	80063	hgsc.bcm.edu	36	16	10439581	10439581	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024997	exon4	c.T1083C	p.A361A	.	.	.
TNFRSF17	608	hgsc.bcm.edu	36	16	11967587	11967587	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001192	exon2	c.T165G	p.I55M	.	.	.
DCUN1D3	123879	hgsc.bcm.edu	36	16	20778945	20778945	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_173475	exon3	c.T679G	p.F227V	.	.	.
DNAH3	55567	hgsc.bcm.edu	36	16	20883326	20883326	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_017539	exon53	c.T9381C	p.I3127I	.	.	.
DNAH3	55567	hgsc.bcm.edu	36	16	21036126	21036126	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_017539	exon12	c.T1713C	p.Y571Y	.	.	.
GTF3C1	2975	hgsc.bcm.edu	36	16	27424777	27424777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001520	exon10	c.G1714A	p.D572N	.	.	.
SHCBP1	79801	hgsc.bcm.edu	36	16	45175069	45175069	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024745	exon12	c.A1553T	p.D518V	.	.	.
PMFBP1	83449	hgsc.bcm.edu	36	16	70720521	70720521	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001160213	exon14	c.T1460G	p.L487R	.	.	.
ZFHX3	463	hgsc.bcm.edu	36	16	71387192	71387192	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006885	exon9	c.C6890T	p.A2297V	.	.	.
ADAT1	23536	hgsc.bcm.edu	36	16	74199629	74199629	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012091	exon9	c.A1283G	p.Q428R	.	.	.
ADAMTS18	170692	hgsc.bcm.edu	36	16	75891680	75891680	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_199355	exon17	c.C2655T	p.C885C	.	.	.
MBTPS1	8720	hgsc.bcm.edu	36	16	82690199	82690199	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003791	exon3	c.G381A	p.T127T	.	.	.
EVI2A	2123	hgsc.bcm.edu	36	17	26670090	26670091	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001003927	exon3	c.137_138insT	p.S46fs	.	.	.
MTMR4	9110	hgsc.bcm.edu	36	17	53945244	53945245	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004687	exon3	c.61_62insC	p.K21fs	.	.	.
DNAH9	1770	hgsc.bcm.edu	36	17	11491197	11491197	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001372	exon12	c.G2054A	p.R685H	.	.	.
CENPV	201161	hgsc.bcm.edu	36	17	16186912	16186912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_181716	exon5	c.G763A	p.D255N	.	.	.
MAP2K3	5606	hgsc.bcm.edu	36	17	21144850	21144850	+	Silent	SNP	G	G	A	rs56166328	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002756	exon5	c.G264A	p.T88T	.	.	.
CCDC55	84081	hgsc.bcm.edu	36	17	25530346	25530346	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032141	exon5	c.A413C	p.D138A	.	.	.
TRPV3	162514	hgsc.bcm.edu	36	17	3374383	3374383	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_145068	exon13	c.A1602G	p.I534M	.	.	.
PLXDC1	57125	hgsc.bcm.edu	36	17	34479781	34479781	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020405	exon13	c.C1237A	p.L413M	.	.	.
GSDMB	55876	hgsc.bcm.edu	36	17	35326965	35326965	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001042471	exon2	c.G131A	p.R44K	.	.	.
KRT36	8689	hgsc.bcm.edu	36	17	36897400	36897400	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003771	exon4	c.T815C	p.L272P	.	.	.
ATP6V0A1	535	hgsc.bcm.edu	36	17	37892724	37892724	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001130021	exon10	c.G836A	p.R279H	.	.	.
NAGLU	4669	hgsc.bcm.edu	36	17	37946654	37946654	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000263	exon5	c.T925C	p.Y309H	.	.	.
ETV4	2118	hgsc.bcm.edu	36	17	38969354	38969354	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001986	exon5	c.T222C	p.D74D	.	.	.
SNX11	29916	hgsc.bcm.edu	36	17	43553831	43553831	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_013323	exon7	c.T775G	p.L259V	.	.	.
SKAP1	8631	hgsc.bcm.edu	36	17	43778315	43778315	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001075099	exon4	c.C231T	p.G77G	.	.	.
NOL11	25926	hgsc.bcm.edu	36	17	63160954	63160954	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015462	exon8	c.A867G	p.V289V	.	.	.
GPR142	350383	hgsc.bcm.edu	36	17	69878352	69878352	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_181790	exon3	c.G456T	p.P152P	.	.	.
ASGR1	432	hgsc.bcm.edu	36	17	7020881	7020881	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001197216	exon4	c.T230C	p.L77P	.	.	.
COLEC12	81035	hgsc.bcm.edu	36	18	336827	336828	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_130386	exon5	c.795_796insT	p.L265fs	.	.	.
KIAA1468	57614	hgsc.bcm.edu	36	18	58076875	58076876	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020854	exon15	c.2188_2189insA	p.E730fs	.	.	.
FHOD3	80206	hgsc.bcm.edu	36	18	32428814	32428814	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_025135	exon7	c.G673A	p.A225T	.	.	.
MC4R	4160	hgsc.bcm.edu	36	18	56189722	56189722	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005912	exon1	c.A841G	p.M281V	.	.	.
CCDC102B	79839	hgsc.bcm.edu	36	18	64872349	64872349	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001093729	exon10	c.T1537C	p.W513R	.	.	.
ENOSF1	55556	hgsc.bcm.edu	36	18	680585	680585	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001126123	exon7	c.C336T	p.C112C	.	.	.
C18orf55	29090	hgsc.bcm.edu	36	18	69976459	69976459	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014177	exon5	c.A610G	p.K204E	.	.	.
CNDP1	84735	hgsc.bcm.edu	36	18	70398354	70398354	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032649	exon10	c.A1176G	p.R392R	.	.	.
SALL3	27164	hgsc.bcm.edu	36	18	74858008	74858008	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_171999	exon3	c.G3601T	p.A1201S	.	.	.
IL27RA	9466	hgsc.bcm.edu	36	19	14018253	14018254	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004843	exon8	c.964_965insC	p.A322fs	.	.	.
ZNF559	84527	hgsc.bcm.edu	36	19	9312823	9312824	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032497	exon5	c.206_207insT	p.N69fs	.	.	.
SLC44A2	57153	hgsc.bcm.edu	36	19	10602976	10602976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020428	exon6	c.G356A	p.R119H	.	.	.
CARM1	10498	hgsc.bcm.edu	36	19	10876663	10876663	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_199141	exon2	c.G257C	p.R86P	.	.	.
NOTCH3	4854	hgsc.bcm.edu	36	19	15151228	15151228	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000435	exon21	c.C3407T	p.S1136L	.	.	.
CYP4F2	8529	hgsc.bcm.edu	36	19	15867322	15867322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001082	exon3	c.G337A	p.A113T	.	.	.
SLC25A42	284439	hgsc.bcm.edu	36	19	19067947	19067947	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_178526	exon2	c.T14C	p.V5A	.	.	.
SBSN	374897	hgsc.bcm.edu	36	19	40707614	40707614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001166034	exon2	c.C1691T	p.P564L	.	.	.
ATP4A	495	hgsc.bcm.edu	36	19	40739686	40739686	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000704	exon12	c.C1838A	p.A613D	.	.	.
ZNF527	84503	hgsc.bcm.edu	36	19	42572027	42572027	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032453	exon5	c.A1236C	p.K412N	.	.	.
STAP2	55620	hgsc.bcm.edu	36	19	4275147	4275147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001013841	exon13	c.C1195T	p.R399W	.	.	.
PRX	57716	hgsc.bcm.edu	36	19	45595649	45595649	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_181882	exon7	c.C450T	p.D150D	.	.	.
HNRNPUL1	11100	hgsc.bcm.edu	36	19	46492412	46492412	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_144732	exon10	c.G1199A	p.R400H	.	.	.
HNRNPUL1	11100	hgsc.bcm.edu	36	19	46501756	46501756	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_144732	exon13	c.G1712A	p.R571H	.	.	.
XRCC1	7515	hgsc.bcm.edu	36	19	48739444	48739444	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006297	exon17	c.T1842C	p.S614S	.	.	.
PLAUR	5329	hgsc.bcm.edu	36	19	48844893	48844893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001005377	exon6	c.C862T	p.L288F	.	.	.
OPA3	80207	hgsc.bcm.edu	36	19	50779837	50779837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_025136	exon1	c.C26T	p.A9V	.	.	.
KDELR1	10945	hgsc.bcm.edu	36	19	53584751	53584751	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006801	exon3	c.G222A	p.T74T	.	.	.
ZNF649	65251	hgsc.bcm.edu	36	19	57086367	57086367	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_023074	exon5	c.T834C	p.T278T	.	.	.
ZNF613	79898	hgsc.bcm.edu	36	19	57140206	57140206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024840	exon6	c.C1150T	p.R384C	.	.	.
PPP2R1A	5518	hgsc.bcm.edu	36	19	57406414	57406414	+	Silent	SNP	G	G	A	rs11537700	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014225	exon4	c.G360A	p.S120S	.	.	.
NLRP9	338321	hgsc.bcm.edu	36	19	60936295	60936295	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_176820	exon2	c.A714G	p.Q238Q	.	.	.
ZNF470	388566	hgsc.bcm.edu	36	19	61781613	61781613	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001001668	exon6	c.G2004C	p.K668N	.	.	.
USP29	57663	hgsc.bcm.edu	36	19	62333346	62333346	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020903	exon4	c.G1491A	p.R497R	.	.	.
TNNT2	7139	hgsc.bcm.edu	36	1	199601371	199601372	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	CT	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001001430	exon8	c.254_255insAG	p.V85fs	.	.	.
PRKAA2	5563	hgsc.bcm.edu	36	1	56945928	56945929	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006252	exon9	c.1613_1614insT	p.D538fs	.	.	.
SLC44A3	126969	hgsc.bcm.edu	36	1	95130519	95130520	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152369	exon13	c.1571_1572insT	p.A524fs	.	.	.
CLCA3P	9629	hgsc.bcm.edu	36	1	86880833	86880834	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	.	.	.	.	.	.	.
HIAT1	64645	hgsc.bcm.edu	36	1	100288098	100288098	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_033055	exon2	c.A130G	p.I44V	.	.	.
UBE4B	10277	hgsc.bcm.edu	36	1	10143897	10143897	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001105562	exon23	c.T3164C	p.M1055T	.	.	.
SLC25A24	29957	hgsc.bcm.edu	36	1	108480871	108480871	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_013386	exon10	c.T1361C	p.V454A	.	.	.
OVGP1	5016	hgsc.bcm.edu	36	1	111767827	111767827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002557	exon5	c.C344T	p.A115V	.	.	.
PTGFRN	5738	hgsc.bcm.edu	36	1	117305534	117305534	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020440	exon5	c.C1360T	p.R454C	.	.	.
NOTCH2	4853	hgsc.bcm.edu	36	1	120284768	120284768	+	Missense_Mutation	SNP	G	G	A	rs61755044	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024408	exon19	c.C3116T	p.T1039M	.	.	.
VPS13D	55187	hgsc.bcm.edu	36	1	12491632	12491632	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018156	exon69	c.C13059T	p.S4353S	.	.	.
ARNT	405	hgsc.bcm.edu	36	1	149062444	149062444	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001197325	exon13	c.T1199C	p.V400A	.	.	.
ADAM15	8751	hgsc.bcm.edu	36	1	153293027	153293027	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_207195	exon4	c.G281A	p.R94H	.	.	.
VSIG8	391123	hgsc.bcm.edu	36	1	158092982	158092982	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001013661	exon5	c.A728T	p.N243I	.	.	.
EPHA2	1969	hgsc.bcm.edu	36	1	16334247	16334247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004431	exon7	c.C1453T	p.R485C	.	.	.
F5	2153	hgsc.bcm.edu	36	1	167778177	167778177	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000130	exon13	c.G2775T	p.K925N	.	.	.
KIFAP3	22920	hgsc.bcm.edu	36	1	168218573	168218573	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014970	exon14	c.T1566G	p.I522M	.	.	.
TDRD5	163589	hgsc.bcm.edu	36	1	177897936	177897936	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001199085	exon15	c.A2397G	p.L799L	.	.	.
TOR1AIP2	163590	hgsc.bcm.edu	36	1	178082306	178082306	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_145034	exon6	c.C936T	p.S312S	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184361493	184361493	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_031935	exon82	c.T12634G	p.L4212V	.	.	.
HMCN1	83872	hgsc.bcm.edu	36	1	184414510	184414510	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_031935	exon104	c.A16283C	p.D5428A	.	.	.
PLEKHA6	22874	hgsc.bcm.edu	36	1	202484572	202484572	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014935	exon12	c.G1824A	p.T608T	.	.	.
EIF4G3	8672	hgsc.bcm.edu	36	1	21048511	21048511	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003760	exon24	c.A3704G	p.H1235R	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	213915447	213915447	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_206933	exon63	c.G12429A	p.S4143S	.	.	.
RRP15	51018	hgsc.bcm.edu	36	1	216571055	216571055	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016052	exon5	c.A848G	p.X283X	.	.	.
PARP1	142	hgsc.bcm.edu	36	1	224631501	224631501	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001618	exon13	c.C1872T	p.N624N	.	.	.
LYST	1130	hgsc.bcm.edu	36	1	233954033	233954033	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000081	exon39	c.G9233A	p.R3078H	.	.	.
OR2L2	26246	hgsc.bcm.edu	36	1	246268509	246268509	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001004686	exon1	c.T317C	p.L106S	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26978453	26978453	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006015	exon20	c.A5477G	p.D1826G	.	.	.
TMEM222	84065	hgsc.bcm.edu	36	1	27534465	27534465	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032125	exon6	c.C548G	p.A183G	.	.	.
ZMYM6	9204	hgsc.bcm.edu	36	1	35257736	35257736	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_007167	exon4	c.T233C	p.V78A	.	.	.
CLSPN	63967	hgsc.bcm.edu	36	1	36003487	36003487	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001190481	exon2	c.G52A	p.V18I	.	.	.
GRIK3	2899	hgsc.bcm.edu	36	1	37043324	37043324	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000831	exon15	c.C2416T	p.P806S	.	.	.
GRIK3	2899	hgsc.bcm.edu	36	1	37055345	37055345	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000831	exon13	c.G1994A	p.R665H	.	.	.
FHL3	2275	hgsc.bcm.edu	36	1	38237598	38237598	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004468	exon2	c.G74A	p.G25D	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39670839	39670839	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012090	exon63	c.A11197G	p.K3733E	.	.	.
IPO13	9670	hgsc.bcm.edu	36	1	44196748	44196748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014652	exon10	c.C1778T	p.A593V	.	.	.
ECHDC2	55268	hgsc.bcm.edu	36	1	53134839	53134839	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001198962	exon8	c.C676T	p.R226W	.	.	.
CAMTA1	23261	hgsc.bcm.edu	36	1	7644409	7644409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015215	exon8	c.G701A	p.S234N	.	.	.
LRRC8C	84230	hgsc.bcm.edu	36	1	89952493	89952493	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032270	exon3	c.A1776G	p.T592T	.	.	.
ENTPD6	955	hgsc.bcm.edu	36	20	25145303	25145304	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001247	exon8	c.729_730insG	p.G243fs	.	.	.
RPRD1B	58490	hgsc.bcm.edu	36	20	36121293	36121294	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_021215	exon5	c.612_613insC	p.L204fs	.	.	.
CSRP2BP	57325	hgsc.bcm.edu	36	20	18116020	18116020	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020536	exon10	c.T2266C	p.Y756H	.	.	.
FOXS1	2307	hgsc.bcm.edu	36	20	29896428	29896428	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004118	exon1	c.A579G	p.K193K	.	.	.
GSS	2937	hgsc.bcm.edu	36	20	32980973	32980973	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000178	exon12	c.T1193C	p.M398T	.	.	.
EDEM2	55741	hgsc.bcm.edu	36	20	33186226	33186226	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018217	exon6	c.G678A	p.W226X	.	.	.
ATRN	8455	hgsc.bcm.edu	36	20	3491971	3491971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_139322	exon10	c.G1747A	p.A583T	.	.	.
SDC4	6385	hgsc.bcm.edu	36	20	43395100	43395100	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002999	exon3	c.G223A	p.G75S	.	.	.
ZSWIM3	140831	hgsc.bcm.edu	36	20	43939799	43939799	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_080752	exon2	c.A1195G	p.T399A	.	.	.
ARFGEF2	10564	hgsc.bcm.edu	36	20	47055065	47055065	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006420	exon26	c.A3484C	p.R1162R	.	.	.
CYP24A1	1591	hgsc.bcm.edu	36	20	52219567	52219567	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000782	exon4	c.A611G	p.Y204C	.	.	.
RAE1	8480	hgsc.bcm.edu	36	20	55382200	55382200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003610	exon10	c.C824T	p.A275V	.	.	.
CXADR	1525	hgsc.bcm.edu	36	21	17859645	17859645	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001338	exon7	c.A862G	p.T288A	.	.	.
RNF160	26046	hgsc.bcm.edu	36	21	29254823	29254823	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015565	exon12	c.A2378T	p.N793I	.	.	.
RWDD2B	10069	hgsc.bcm.edu	36	21	29302618	29302618	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016940	exon2	c.A263T	p.N88I	.	.	.
TIAM1	7074	hgsc.bcm.edu	36	21	31517670	31517670	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003253	exon9	c.C1918A	p.L640I	.	.	.
CABIN1	23523	hgsc.bcm.edu	36	22	22824130	22824131	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012295	exon26	c.4092_4093insC	p.K1364fs	.	.	.
CYTSA	23384	hgsc.bcm.edu	36	22	23095247	23095247	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001145468	exon13	c.G3046A	p.A1016T	.	.	.
ADRBK2	157	hgsc.bcm.edu	36	22	24416189	24416189	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005160	exon12	c.G991A	p.A331T	.	.	.
SMTN	6525	hgsc.bcm.edu	36	22	29821409	29821409	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006932	exon12	c.A1753G	p.T585A	.	.	.
CELSR1	9620	hgsc.bcm.edu	36	22	45213812	45213812	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014246	exon3	c.G4344A	p.P1448P	.	.	.
CERK	64781	hgsc.bcm.edu	36	22	45468060	45468060	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022766	exon10	c.T1054G	p.F352V	.	.	.
MBD5	55777	hgsc.bcm.edu	36	2	148963714	148963715	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018328	exon12	c.3344_3345insC	p.S1115fs	.	.	.
UBR3	130507	hgsc.bcm.edu	36	2	170626175	170626176	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_172070	exon35	c.4995_4996insG	p.F1665fs	.	.	.
ODC1	4953	hgsc.bcm.edu	36	2	10501079	10501079	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002539	exon7	c.T654A	p.V218V	.	.	.
LCT	3938	hgsc.bcm.edu	36	2	136277997	136277997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002299	exon11	c.G4636A	p.G1546S	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141176196	141176196	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018557	exon39	c.A6286G	p.I2096V	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141176542	141176542	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018557	exon38	c.G6074A	p.R2025H	.	.	.
SCN2A	6326	hgsc.bcm.edu	36	2	165909516	165909516	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001040143	exon15	c.G2768A	p.W923X	.	.	.
SCN2A	6326	hgsc.bcm.edu	36	2	165954483	165954483	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001040143	exon26	c.C5921T	p.S1974L	.	.	.
AGPS	8540	hgsc.bcm.edu	36	2	178014003	178014003	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003659	exon6	c.A702G	p.P234P	.	.	.
ZNF804A	91752	hgsc.bcm.edu	36	2	185439407	185439407	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_194250	exon2	c.G178T	p.E60X	.	.	.
MYO1B	4430	hgsc.bcm.edu	36	2	191936801	191936801	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012223	exon10	c.T868C	p.S290P	.	.	.
OBFC2A	64859	hgsc.bcm.edu	36	2	192258668	192258668	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001031716	exon6	c.A544T	p.T182S	.	.	.
CASP8	841	hgsc.bcm.edu	36	2	201839461	201839461	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_033356	exon2	c.T7G	p.F3V	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21111197	21111197	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000384	exon8	c.T900C	p.G300G	.	.	.
ERBB4	2066	hgsc.bcm.edu	36	2	212520472	212520472	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005235	exon3	c.T349C	p.L117L	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215531304	215531304	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_173076	exon41	c.A6059C	p.Q2020P	.	.	.
ABCA12	26154	hgsc.bcm.edu	36	2	215553590	215553590	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_173076	exon31	c.G4602A	p.T1534T	.	.	.
IL8RB	3579	hgsc.bcm.edu	36	2	218708689	218708689	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001557	exon3	c.G920T	p.S307I	.	.	.
SP100	6672	hgsc.bcm.edu	36	2	231077211	231077211	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001080391	exon21	c.A1832G	p.E611G	.	.	.
ILKAP	80895	hgsc.bcm.edu	36	2	238757046	238757046	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_030768	exon8	c.T701C	p.L234P	.	.	.
PASK	23178	hgsc.bcm.edu	36	2	241730936	241730936	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015148	exon2	c.C185T	p.T62I	.	.	.
DNAJC27	51277	hgsc.bcm.edu	36	2	25034234	25034234	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001198559	exon4	c.T354C	p.L118L	.	.	.
OTOF	9381	hgsc.bcm.edu	36	2	26556616	26556616	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_194248	exon16	c.G1871T	p.R624L	.	.	.
CENPA	1058	hgsc.bcm.edu	36	2	26868504	26868504	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001042426	exon2	c.C102T	p.G34G	.	.	.
DHX57	90957	hgsc.bcm.edu	36	2	38923825	38923825	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_198963	exon12	c.C2251T	p.R751W	.	.	.
FBXO11	80204	hgsc.bcm.edu	36	2	47913095	47913095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001190274	exon11	c.C1295T	p.A432V	.	.	.
KLRAQ1	129285	hgsc.bcm.edu	36	2	48551767	48551767	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001135629	exon10	c.G935A	p.R312H	.	.	.
MBOAT2	129642	hgsc.bcm.edu	36	2	8934708	8934708	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_138799	exon7	c.A593G	p.Y198C	.	.	.
PROM2	150696	hgsc.bcm.edu	36	2	95309321	95309321	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_144707	exon11	c.T1276C	p.W426R	.	.	.
OSBPL11	114885	hgsc.bcm.edu	36	3	126781416	126781417	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022776	exon3	c.392_393insG	p.E131fs	.	.	.
TFG	10342	hgsc.bcm.edu	36	3	101946411	101946411	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006070	exon7	c.C766T	p.Q256X	.	.	.
MORC1	27136	hgsc.bcm.edu	36	3	110181140	110181140	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014429	exon24	c.A2389C	p.S797R	.	.	.
NR1I2	8856	hgsc.bcm.edu	36	3	121016889	121016889	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003889	exon7	c.A967G	p.M323V	.	.	.
SEC61A1	29927	hgsc.bcm.edu	36	3	129266436	129266436	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_013336	exon8	c.G643A	p.A215T	.	.	.
IFT122	55764	hgsc.bcm.edu	36	3	130721770	130721770	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_052990	exon27	c.G3368A	p.R1123H	.	.	.
PIK3R4	30849	hgsc.bcm.edu	36	3	131935390	131935390	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014602	exon4	c.T1142C	p.V381A	.	.	.
NUP210	23225	hgsc.bcm.edu	36	3	13348805	13348805	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024923	exon29	c.T3923G	p.L1308R	.	.	.
ACPP	55	hgsc.bcm.edu	36	3	133519067	133519067	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001099	exon1	c.T77C	p.L26P	.	.	.
SLC25A36	55186	hgsc.bcm.edu	36	3	142158123	142158123	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001104647	exon2	c.T106C	p.S36P	.	.	.
XRN1	54464	hgsc.bcm.edu	36	3	143584924	143584924	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_019001	exon22	c.C2524A	p.R842S	.	.	.
TRPC1	7220	hgsc.bcm.edu	36	3	143986566	143986566	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003304	exon6	c.A1189T	p.I397F	.	.	.
PCOLCE2	26577	hgsc.bcm.edu	36	3	144049937	144049937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_013363	exon3	c.G260A	p.R87H	.	.	.
P2RY14	9934	hgsc.bcm.edu	36	3	152414368	152414368	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014879	exon3	c.G427A	p.V143M	.	.	.
IGSF10	285313	hgsc.bcm.edu	36	3	152657553	152657553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_178822	exon2	c.G275A	p.G92D	.	.	.
HACL1	26061	hgsc.bcm.edu	36	3	15588196	15588196	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012260	exon12	c.A1078G	p.N360D	.	.	.
SMC4	10051	hgsc.bcm.edu	36	3	161614992	161614992	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001002800	exon9	c.A1265G	p.K422R	.	.	.
FNDC3B	64778	hgsc.bcm.edu	36	3	173507969	173507969	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001135095	exon10	c.T1184C	p.L395P	.	.	.
RTP2	344892	hgsc.bcm.edu	36	3	188899082	188899082	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001004312	exon2	c.C576T	p.S192S	.	.	.
OPA1	4976	hgsc.bcm.edu	36	3	194844518	194844518	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_130832	exon14	c.A1319G	p.H440R	.	.	.
GOLGA4	2803	hgsc.bcm.edu	36	3	37318762	37318762	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001172713	exon11	c.G1235A	p.R412H	.	.	.
SCN11A	11280	hgsc.bcm.edu	36	3	38913455	38913455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014139	exon14	c.G2288A	p.R763H	.	.	.
SEC22C	9117	hgsc.bcm.edu	36	3	42572439	42572439	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004206	exon6	c.C698T	p.A233V	.	.	.
IP6K2	51447	hgsc.bcm.edu	36	3	48707553	48707553	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001190317	exon3	c.T350C	p.M117T	.	.	.
CCDC71	64925	hgsc.bcm.edu	36	3	49175346	49175346	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022903	exon2	c.C1300T	p.R434W	.	.	.
LRTM1	57408	hgsc.bcm.edu	36	3	54934116	54934116	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020678	exon2	c.A174C	p.Q58H	.	.	.
FLNB	2317	hgsc.bcm.edu	36	3	58129330	58129330	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001164317	exon45	c.T7415C	p.M2472T	.	.	.
C3orf67	200844	hgsc.bcm.edu	36	3	58824389	58824389	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_198463	exon12	c.A1153G	p.N385D	.	.	.
FEZF2	55079	hgsc.bcm.edu	36	3	62332011	62332011	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018008	exon4	c.G1041A	p.T347T	.	.	.
ADAMTS9	56999	hgsc.bcm.edu	36	3	64522464	64522464	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_182920	exon30	c.T4528G	p.S1510A	.	.	.
MITF	4286	hgsc.bcm.edu	36	3	70091192	70091192	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_198158	exon8	c.C771T	p.R257R	.	.	.
RAD18	56852	hgsc.bcm.edu	36	3	8980034	8980034	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020165	exon1	c.C36T	p.G12G	.	.	.
TADA3L	10474	hgsc.bcm.edu	36	3	9806469	9806469	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_133480	exon3	c.A386G	p.K129R	.	.	.
EVC2	132884	hgsc.bcm.edu	36	4	5671204	5671205	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_147127	exon15	c.2608_2609insC	p.K870fs	.	.	.
PDE6B	5158	hgsc.bcm.edu	36	4	646338	646339	+	In_Frame_Ins	INS	-	-	TCC	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001145292	exon12	c.926_927insTCC	p.F309delinsFP	.	.	.
ADH6	130	hgsc.bcm.edu	36	4	100350468	100350468	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000672	exon5	c.A361C	p.T121P	.	.	.
PHF17	79960	hgsc.bcm.edu	36	4	129989699	129989699	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_199320	exon5	c.C411A	p.S137R	.	.	.
PRMT10	90826	hgsc.bcm.edu	36	4	148794625	148794625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_138364	exon9	c.G1873A	p.A625T	.	.	.
NR3C2	4306	hgsc.bcm.edu	36	4	149400695	149400695	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001166104	exon3	c.T1782C	p.T594T	.	.	.
LRBA	987	hgsc.bcm.edu	36	4	151993213	151993213	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006726	exon23	c.T3099G	p.T1033T	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153473238	153473238	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018315	exon5	c.T705C	p.A235A	 FBXW7,stomach,NS,Substitution - Missense,-2 	.	.
FGA	2243	hgsc.bcm.edu	36	4	155725235	155725235	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000508	exon6	c.A2092C	p.S698R	.	.	.
GLRB	2743	hgsc.bcm.edu	36	4	158311112	158311112	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001166060	exon10	c.T1276A	p.L426I	.	.	.
NPY1R	4886	hgsc.bcm.edu	36	4	164467057	164467057	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000909	exon2	c.C100A	p.H34N	.	.	.
SPOCK3	50859	hgsc.bcm.edu	36	4	168070368	168070368	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016950	exon6	c.A461G	p.D154G	.	.	.
DDX60	55601	hgsc.bcm.edu	36	4	169383394	169383394	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_017631	exon34	c.T4542C	p.L1514L	.	.	.
FBXO8	26269	hgsc.bcm.edu	36	4	175398903	175398903	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012180	exon4	c.G498A	p.S166S	.	.	.
POLN	353497	hgsc.bcm.edu	36	4	2099732	2099732	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_181808	exon17	c.C1888T	p.R630C	.	.	.
LIMCH1	22998	hgsc.bcm.edu	36	4	41302773	41302773	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001112717	exon6	c.C481T	p.R161X	.	.	.
WDR21B	285429	hgsc.bcm.edu	36	4	41678784	41678784	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001029955	exon1	c.G218A	p.R73Q	.	.	.
GABRG1	2565	hgsc.bcm.edu	36	4	45762281	45762281	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_173536	exon4	c.T399C	p.L133L	.	.	.
PDE6B	5158	hgsc.bcm.edu	36	4	646335	646335	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001145292	exon12	c.C923A	p.A308D	.	.	.
RASSF6	166824	hgsc.bcm.edu	36	4	74678098	74678098	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_177532	exon4	c.T221C	p.I74T	.	.	.
CXCL11	6373	hgsc.bcm.edu	36	4	77175511	77175511	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005409	exon2	c.A70G	p.M24V	.	.	.
ACOX3	8310	hgsc.bcm.edu	36	4	8462907	8462907	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003501	exon6	c.G619A	p.A207T	.	.	.
NUDT9	53343	hgsc.bcm.edu	36	4	88598113	88598113	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_198038	exon8	c.T819C	p.S273S	.	.	.
ABCG2	9429	hgsc.bcm.edu	36	4	89253673	89253673	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004827	exon9	c.G1000A	p.E334K	.	.	.
MMRN1	22915	hgsc.bcm.edu	36	4	91075216	91075216	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_007351	exon6	c.T1362C	p.T454T	.	.	.
GRID2	2895	hgsc.bcm.edu	36	4	94357059	94357059	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001510	exon6	c.A937C	p.K313Q	.	.	.
APC	324	hgsc.bcm.edu	36	5	112179127	112179128	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000038	exon9	c.871_872insT	p.V291fs	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203868	112203869	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000038	exon16	c.4678_4679insA	p.E1560fs	.	.	.
SLC9A3	6550	hgsc.bcm.edu	36	5	528754	528755	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004174	exon15	c.2173_2174insC	p.N725fs	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203202	112203202	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001127511	exon14	c.C3958T	p.Q1320X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
DCP2	167227	hgsc.bcm.edu	36	5	112371632	112371632	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152624	exon9	c.T1041C	p.S347S	.	.	.
HSD17B4	3295	hgsc.bcm.edu	36	5	118889597	118889597	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000414	exon19	c.T1660C	p.S554P	.	.	.
FNIP1	96459	hgsc.bcm.edu	36	5	131010712	131010712	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_133372	exon17	c.T3392G	p.V1131G	.	.	.
IL3	3562	hgsc.bcm.edu	36	5	131425967	131425967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000588	exon3	c.G268A	p.A90T	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13819267	13819267	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001369	exon59	c.G9919A	p.A3307T	.	.	.
PCDHB5	26167	hgsc.bcm.edu	36	5	140495613	140495613	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015669	exon1	c.T413C	p.M138T	.	.	.
PCDHB16	57717	hgsc.bcm.edu	36	5	140543054	140543054	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020957	exon1	c.A736G	p.I246V	.	.	.
PCDHGA12	26025	hgsc.bcm.edu	36	5	140791949	140791949	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032094	exon1	c.A1439G	p.D480G	.	.	.
TCERG1	10915	hgsc.bcm.edu	36	5	145843351	145843351	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001040006	exon13	c.G2015A	p.R672Q	.	.	.
NMUR2	56923	hgsc.bcm.edu	36	5	151755302	151755302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020167	exon3	c.C848T	p.P283L	.	.	.
FAM71B	153745	hgsc.bcm.edu	36	5	156525705	156525705	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_130899	exon1	c.T53C	p.M18T	.	.	.
NSD1	64324	hgsc.bcm.edu	36	5	176651638	176651638	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022455	exon22	c.A6336G	p.E2112E	.	.	.
HNRNPAB	3182	hgsc.bcm.edu	36	5	177569769	177569769	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_031266	exon7	c.G818A	p.G273D	.	.	.
ZNF454	285676	hgsc.bcm.edu	36	5	178324922	178324922	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_182594	exon5	c.T911C	p.I304T	.	.	.
CDH9	1007	hgsc.bcm.edu	36	5	26942591	26942591	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016279	exon4	c.G637T	p.E213X	.	.	.
AGXT2	64902	hgsc.bcm.edu	36	5	35049913	35049913	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_031900	exon10	c.C1032T	p.D344D	.	.	.
NUP155	9631	hgsc.bcm.edu	36	5	37345055	37345055	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_153485	exon24	c.A2700G	p.S900S	.	.	.
HMGCS1	3157	hgsc.bcm.edu	36	5	43329970	43329970	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002130	exon7	c.T1128G	p.G376G	.	.	.
PARP8	79668	hgsc.bcm.edu	36	5	50173649	50173649	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001178055	exon27	c.C2555T	p.A852V	.	.	.
ZCCHC9	84240	hgsc.bcm.edu	36	5	80636470	80636470	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001131036	exon2	c.G138A	p.R46R	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82871619	82871619	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001164097	exon7	c.A4080G	p.A1360A	.	.	.
LNPEP	4012	hgsc.bcm.edu	36	5	96376435	96376435	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005575	exon13	c.G2256C	p.L752F	.	.	.
CHD1	1105	hgsc.bcm.edu	36	5	98240161	98240161	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001270	exon23	c.T3239C	p.I1080T	.	.	.
MED23	9439	hgsc.bcm.edu	36	6	131961538	131961539	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004830	exon19	c.2277_2278insA	p.N759fs	.	.	.
C6orf211	79624	hgsc.bcm.edu	36	6	151827428	151827429	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024573	exon4	c.540_541insT	p.E180fs	.	.	.
TPMT	7172	hgsc.bcm.edu	36	6	18251871	18251872	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000367	exon4	c.301_302insT	p.T101fs	.	.	.
TAP1	6890	hgsc.bcm.edu	36	6	32923309	32923310	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000593	exon9	c.2042_2043insG	p.A681fs	.	.	.
PHF3	23469	hgsc.bcm.edu	36	6	64479634	64479635	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015153	exon15	c.4191_4192insT	p.D1397fs	.	.	.
HTR1E	3354	hgsc.bcm.edu	36	6	87782565	87782566	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000865	exon2	c.794_795insC	p.I265fs	.	.	.
BTN2A3	54718	hgsc.bcm.edu	36	6	26539284	26539285	+	Frame_Shift_Ins	INS	-	-	TC	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	.	.	.	.	.	.	.
ASCC3	10973	hgsc.bcm.edu	36	6	101179905	101179905	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006828	exon30	c.C4669A	p.P1557T	.	.	.
BEND3	57673	hgsc.bcm.edu	36	6	107526462	107526462	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001080450	exon4	c.C226T	p.R76W	.	.	.
SLC16A10	117247	hgsc.bcm.edu	36	6	111605525	111605525	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018593	exon3	c.T906G	p.L302L	.	.	.
IGF2R	3482	hgsc.bcm.edu	36	6	160405510	160405510	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000876	exon28	c.G3974A	p.R1325H	.	.	.
QKI	9444	hgsc.bcm.edu	36	6	163907812	163907812	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006775	exon7	c.A1004C	p.D335A	.	.	.
BRP44L	51660	hgsc.bcm.edu	36	6	166699468	166699468	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016098	exon3	c.C288T	p.G96G	.	.	.
AOF1	221656	hgsc.bcm.edu	36	6	18293990	18293990	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_153042	exon8	c.C543T	p.T181T	.	.	.
TRIM27	5987	hgsc.bcm.edu	36	6	28980099	28980099	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006510	exon8	c.A1269G	p.P423P	.	.	.
NCR3	259197	hgsc.bcm.edu	36	6	31665722	31665722	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_147130	exon2	c.T204C	p.N68N	.	.	.
NOTCH4	4855	hgsc.bcm.edu	36	6	32288284	32288284	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004557	exon17	c.A2625T	p.G875G	.	.	.
IP6K3	117283	hgsc.bcm.edu	36	6	33798529	33798529	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_054111	exon6	c.T1179A	p.I393I	.	.	.
PRPF4B	8899	hgsc.bcm.edu	36	6	3987800	3987800	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003913	exon5	c.A1649G	p.Q550R	.	.	.
MUT	4594	hgsc.bcm.edu	36	6	49529272	49529272	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000255	exon5	c.G1068A	p.W356X	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	51907040	51907040	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_170724	exon37	c.T5948G	p.L1983R	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	52042265	52042265	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_170724	exon11	c.G727A	p.A243T	.	.	.
ICK	22858	hgsc.bcm.edu	36	6	53003840	53003840	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016513	exon6	c.G340A	p.A114T	.	.	.
C6orf150	115004	hgsc.bcm.edu	36	6	74195213	74195213	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_138441	exon4	c.T1157A	p.I386N	.	.	.
VNN3	55350	hgsc.bcm.edu	36	6	133089685	133089685	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	.	.	.	.	.	.	.
KCND2	3751	hgsc.bcm.edu	36	7	119702091	119702091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012281	exon1	c.G169A	p.D57N	.	.	.
NRF1	4899	hgsc.bcm.edu	36	7	129084559	129084559	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_005011	exon2	c.G132A	p.S44S	.	.	.
SLC13A4	26266	hgsc.bcm.edu	36	7	135029447	135029447	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012450	exon10	c.T1096C	p.Y366H	.	.	.
ZC3HAV1	56829	hgsc.bcm.edu	36	7	138383036	138383036	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020119	exon13	c.T2553C	p.T851T	.	.	.
TAS2R5	54429	hgsc.bcm.edu	36	7	141137140	141137140	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018980	exon1	c.A510T	p.A170A	.	.	.
ZNF425	155054	hgsc.bcm.edu	36	7	148432149	148432149	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001001661	exon4	c.G1747A	p.A583T	.	.	.
GALNT11	63917	hgsc.bcm.edu	36	7	151449574	151449574	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022087	exon12	c.G1706A	p.R569Q	.	.	.
HTR5A	3361	hgsc.bcm.edu	36	7	154493767	154493767	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024012	exon1	c.C225T	p.P75P	.	.	.
BZW2	28969	hgsc.bcm.edu	36	7	16703177	16703177	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014038	exon9	c.A935C	p.E312A	.	.	.
MACC1	346389	hgsc.bcm.edu	36	7	20165270	20165270	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_182762	exon5	c.T1239C	p.S413S	.	.	.
C7orf27	221927	hgsc.bcm.edu	36	7	2553494	2553494	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152743	exon3	c.A272G	p.Q91R	.	.	.
PSMA2	5683	hgsc.bcm.edu	36	7	42923903	42923903	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002787	exon7	c.A587G	p.K196R	.	.	.
EGFR	1956	hgsc.bcm.edu	36	7	55191114	55191114	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_201282	exon8	c.C987T	p.C329C	.	.	.
KCTD7	154881	hgsc.bcm.edu	36	7	65740697	65740697	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001167961	exon3	c.T337A	p.S113T	.	.	.
BAZ1B	9031	hgsc.bcm.edu	36	7	72530444	72530444	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032408	exon7	c.T1283C	p.L428P	.	.	.
MAGI2	9863	hgsc.bcm.edu	36	7	77723720	77723720	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_012301	exon10	c.G1523A	p.R508H	.	.	.
KRIT1	889	hgsc.bcm.edu	36	7	91702062	91702062	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_194455	exon9	c.G841C	p.D281H	.	.	.
SAMD9	54809	hgsc.bcm.edu	36	7	92569844	92569844	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001193307	exon2	c.A3503C	p.Q1168P	.	.	.
TRRAP	8295	hgsc.bcm.edu	36	7	98365677	98365677	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003496	exon24	c.A3305G	p.Y1102C	.	.	.
MEPCE	56257	hgsc.bcm.edu	36	7	99868628	99868628	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001194991	exon3	c.C415T	p.R139C	.	.	.
ZHX2	22882	hgsc.bcm.edu	36	8	124033144	124033145	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014943	exon3	c.213_214insA	p.S71fs	.	.	.
KCTD9	54793	hgsc.bcm.edu	36	8	25352731	25352732	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_017634	exon6	c.480_481insA	p.N160fs	.	.	.
CSMD3	114788	hgsc.bcm.edu	36	8	113718307	113718307	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_198123	exon22	c.G3630A	p.S1210S	.	.	.
EXT1	2131	hgsc.bcm.edu	36	8	119192225	119192225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000127	exon1	c.C242T	p.S81F	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121289714	121289714	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_021110	exon11	c.T1254C	p.Y418Y	.	.	.
ANXA13	312	hgsc.bcm.edu	36	8	124777121	124777121	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004306	exon5	c.G379T	p.A127S	.	.	.
WISP1	8840	hgsc.bcm.edu	36	8	134306930	134306930	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_080838	exon3	c.C465T	p.N155N	.	.	.
COL22A1	169044	hgsc.bcm.edu	36	8	139680198	139680198	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152888	exon61	c.T4311C	p.N1437N	.	.	.
MYST3	7994	hgsc.bcm.edu	36	8	41909173	41909173	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001099413	exon18	c.G5722A	p.A1908T	.	.	.
MYST3	7994	hgsc.bcm.edu	36	8	41910468	41910468	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001099413	exon18	c.C4427T	p.A1476V	.	.	.
TOX	9760	hgsc.bcm.edu	36	8	59890794	59890794	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014729	exon7	c.A1049G	p.Q350R	.	.	.
ANGPT2	285	hgsc.bcm.edu	36	8	6372554	6372554	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001118888	exon2	c.T340G	p.S114A	.	.	.
AGPAT5	55326	hgsc.bcm.edu	36	8	6575751	6575751	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_018361	exon3	c.C401T	p.A134V	.	.	.
STAU2	27067	hgsc.bcm.edu	36	8	74763589	74763589	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001164384	exon3	c.A32G	p.Q11R	.	.	.
PXMP3	5828	hgsc.bcm.edu	36	8	78058617	78058617	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000318	exon4	c.A353C	p.E118A	.	.	.
KIAA0020	9933	hgsc.bcm.edu	36	9	2814764	2814765	+	Frame_Shift_Ins	INS	-	-	GT	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014878	exon11	c.1087_1088insAC	p.D363fs	.	.	.
CHMP5	51510	hgsc.bcm.edu	36	9	33268213	33268214	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_016410	exon7	c.599_600insA	p.T200fs	.	.	.
TMEFF1	8577	hgsc.bcm.edu	36	9	102349988	102349988	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_003692	exon6	c.T702G	p.H234Q	.	.	.
C9orf125	84302	hgsc.bcm.edu	36	9	103279081	103279081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032342	exon2	c.G115A	p.A39T	.	.	.
SLC44A1	23446	hgsc.bcm.edu	36	9	107176744	107176744	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_080546	exon13	c.C1539T	p.T513T	.	.	.
ZNF462	58499	hgsc.bcm.edu	36	9	108729157	108729157	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_021224	exon3	c.A3143G	p.H1048R	.	.	.
COL27A1	85301	hgsc.bcm.edu	36	9	116060657	116060657	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_032888	exon28	c.C3157T	p.R1053X	.	.	.
PAPPA	5069	hgsc.bcm.edu	36	9	117989881	117989881	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002581	exon2	c.G1043A	p.R348H	.	.	.
PAPPA	5069	hgsc.bcm.edu	36	9	118037651	118037651	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_002581	exon7	c.G2646T	p.K882N	.	.	.
MORN5	254956	hgsc.bcm.edu	36	9	124002014	124002014	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_198469	exon5	c.A469G	p.T157A	.	.	.
NEK6	10783	hgsc.bcm.edu	36	9	126129472	126129472	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001166167	exon7	c.G603A	p.T201T	.	.	.
LRRC8A	56262	hgsc.bcm.edu	36	9	130710885	130710885	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_019594	exon3	c.C1621G	p.R541G	.	.	.
LAMC3	10319	hgsc.bcm.edu	36	9	132910816	132910816	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006059	exon8	c.C1467T	p.C489C	.	.	.
C9orf171	389799	hgsc.bcm.edu	36	9	134408223	134408223	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_207417	exon6	c.G808A	p.D270N	.	.	.
SLC24A2	25769	hgsc.bcm.edu	36	9	19506186	19506186	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_020344	exon11	c.G1951T	p.E651X	.	.	.
C9orf82	79886	hgsc.bcm.edu	36	9	26874813	26874813	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024828	exon4	c.C660G	p.V220V	.	.	.
NOL6	65083	hgsc.bcm.edu	36	9	33453428	33453428	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022917	exon24	c.G3006A	p.R1002R	.	.	.
DNAJB5	25822	hgsc.bcm.edu	36	9	34986474	34986474	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001135005	exon3	c.G640A	p.G214S	.	.	.
FANCG	2189	hgsc.bcm.edu	36	9	35066548	35066548	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004629	exon8	c.G957A	p.P319P	.	.	.
MAK10	60560	hgsc.bcm.edu	36	9	87766791	87766791	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_024635	exon6	c.C392T	p.T131M	.	.	.
IPPK	64768	hgsc.bcm.edu	36	9	94437323	94437323	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_022755	exon10	c.C1005A	p.I335I	.	.	.
BICD2	23299	hgsc.bcm.edu	36	9	94524880	94524880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_015250	exon3	c.G485A	p.R162H	.	.	.
SCML2	10389	hgsc.bcm.edu	36	X	18170502	18170503	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_006089	exon14	c.1952_1953insC	p.L651fs	.	.	.
FAM123B	139285	hgsc.bcm.edu	36	X	63328783	63328784	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_152424	exon2	c.1109_1110insG	p.E370fs	.	.	.
TRMT2B	79979	hgsc.bcm.edu	36	X	100162747	100162747	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001167970	exon10	c.T1065C	p.T355T	.	.	.
ODZ1	10178	hgsc.bcm.edu	36	X	123482169	123482169	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_014253	exon18	c.A3180G	p.V1060V	.	.	.
PLAC1	10761	hgsc.bcm.edu	36	X	133528171	133528171	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_021796	exon3	c.G208A	p.A70T	.	.	.
MTM1	4534	hgsc.bcm.edu	36	X	149577064	149577064	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_000252	exon11	c.C1166T	p.A389V	.	.	.
RAB39B	116442	hgsc.bcm.edu	36	X	154146730	154146730	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_171998	exon1	c.T38A	p.V13D	.	.	.
MAP3K15	389840	hgsc.bcm.edu	36	X	19323123	19323123	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001001671	exon16	c.G2191C	p.G731R	.	.	.
CNKSR2	22866	hgsc.bcm.edu	36	X	21537118	21537118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001168649	exon19	c.C2007T	p.C669C	.	.	.
USP11	8237	hgsc.bcm.edu	36	X	46991688	46991688	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004651	exon19	c.A2591T	p.E864V	.	.	.
SHROOM2	357	hgsc.bcm.edu	36	X	9801820	9801820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_001649	exon2	c.G294A	p.K98K	.	.	.
KDM5D	8284	hgsc.bcm.edu	36	Y	20328928	20328928	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00A-01A-01W-A005-10	TCGA-AA-A00A-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	14e1c2bb-2b02-4110-8841-eee643242dfa	c1d4ce20-bb17-4e1c-b0b7-b125b5797554	NM_004653	exon24	c.A3492G	p.P1164P	.	.	.