Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target PCDH15 65217 broad.mit.edu 36 10 55808593 55808593 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001142767 exon4 c.G273C p.K91N . . . IDE 3416 broad.mit.edu 36 10 94213522 94213522 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004969 exon21 c.G2707A p.E903K . . . NOLC1 9221 broad.mit.edu 36 10 103909022 103909023 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004741 exon6 c.690_691del p.230_231del . . . C11orf53 341032 broad.mit.edu 36 11 110661799 110661799 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198498 exon4 c.C521T p.P174L . . . VPS11 55823 broad.mit.edu 36 11 118449731 118449731 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021729 exon7 c.G1097C p.R366T . . . OR8D2 283160 broad.mit.edu 36 11 123694922 123694922 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001002918 exon1 c.C382T p.R128C . . . HEPN1 641654 broad.mit.edu 36 11 124295061 124295061 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001037558 exon1 c.C205T p.R69W . . . LUZP2 338645 broad.mit.edu 36 11 24892632 24892632 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001009909 exon7 c.G494A p.R165H . . . SCUBE2 57758 broad.mit.edu 36 11 9037492 9037492 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020974 exon9 c.G1024A p.V342M . . . AMOTL1 154810 broad.mit.edu 36 11 94167936 94167936 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_130847 exon2 c.T161A p.L54X . . . CCDC92 80212 broad.mit.edu 36 12 122987674 122987674 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_025140 exon5 c.C880T p.R294W . . . TMTC1 83857 broad.mit.edu 36 12 29795882 29795882 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001193451 exon5 c.G922T p.V308L . . . A2ML1 144568 broad.mit.edu 36 12 8901189 8901189 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_144670 exon24 c.G3011T p.G1004V . . . EDNRB 1910 broad.mit.edu 36 13 77390597 77390597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001122659 exon1 c.C113T p.P38L . . . SLITRK5 26050 broad.mit.edu 36 13 87127273 87127273 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015567 exon2 c.G1629T p.L543F . . . RYR3 6263 broad.mit.edu 36 15 31906241 31906241 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001036 exon84 c.C11241G p.N3747K . . . CILP 8483 broad.mit.edu 36 15 63276401 63276401 + Silent SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003613 exon9 c.C3276T p.L1092L . . . AKAP13 11214 broad.mit.edu 36 15 84054851 84054851 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006738 exon19 c.C5582A p.S1861X . . . C16orf45 89927 broad.mit.edu 36 16 15582587 15582587 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001142469 exon4 c.C266A p.T89N . . . POLR3E 55718 broad.mit.edu 36 16 22227827 22227827 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018119 exon5 c.C246T p.D82D . . . FTO 79068 broad.mit.edu 36 16 52417443 52417443 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001080432 exon3 c.T290G p.I97S . . . NPRL3 8131 broad.mit.edu 36 16 76808 76808 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001077350 exon14 c.C1605T p.R535R . . . GRIN2A 2903 broad.mit.edu 36 16 9766147 9766147 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001134408 exon13 c.A2755G p.K919E . . . MLLT6 4302 broad.mit.edu 36 17 34119324 34119324 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005937 exon6 c.C522T p.C174C . . . GSDMB 55876 broad.mit.edu 36 17 35319651 35319651 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001042471 exon4 c.A460G p.N154D . . . KRT33A 3883 broad.mit.edu 36 17 36755995 36755995 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004138 exon7 c.G1117A p.A373T . . . NLRP1 22861 broad.mit.edu 36 17 5403369 5403369 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033007 exon4 c.G1371A p.T457T . . . CCDC46 201134 broad.mit.edu 36 17 61354230 61354230 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199165 exon19 c.C1912G p.L638V . . . CDR2L 30850 broad.mit.edu 36 17 70509864 70509864 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014603 exon4 c.G452A p.R151H . . . TP53 7157 broad.mit.edu 36 17 7519233 7519233 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126114 exon5 c.G422A p.C141Y . . . ZNF521 25925 broad.mit.edu 36 18 21156053 21156053 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015461 exon3 c.T137A p.V46E . . . POLI 11201 broad.mit.edu 36 18 50074332 50074332 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_007195 exon10 c.A1720G p.K574E . . . OR7C1 26664 broad.mit.edu 36 19 14771360 14771360 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198944 exon1 c.G589A p.V197M . . . CPAMD8 27151 broad.mit.edu 36 19 16969100 16969100 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015692 exon11 c.G1057T p.A353S . . . TMEM190 147744 broad.mit.edu 36 19 60581028 60581028 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_139172 exon4 c.C267T p.S89S . . . ZNF419 79744 broad.mit.edu 36 19 62694769 62694769 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001098494 exon3 c.C194T p.A65V . . . DFFA 1676 broad.mit.edu 36 1 10449840 10449840 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004401 exon3 c.C435A p.D145E . . . FLG 2312 broad.mit.edu 36 1 150552414 150552414 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002016 exon3 c.A1572T p.R524S . . . SPTA1 6708 broad.mit.edu 36 1 156871078 156871078 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003126 exon39 c.T5444G p.L1815W . . . ATP1A4 480 broad.mit.edu 36 1 158414066 158414066 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144699 exon18 c.C2724T p.Y908Y . . . DARS2 55157 broad.mit.edu 36 1 172072797 172072797 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018122 exon8 c.G760A p.G254S . . . KIAA0090 23065 broad.mit.edu 36 1 19436251 19436251 + Silent SNP A G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015047 exon12 c.T1281C p.D427D . . . NFASC 23114 broad.mit.edu 36 1 203217618 203217618 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001160331 exon19 c.C2350T p.R784X . . . SLC26A9 115019 broad.mit.edu 36 1 204171508 204171508 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_134325 exon2 c.G64A p.D22N . . . RYR2 6262 broad.mit.edu 36 1 235684429 235684429 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T G T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001035 exon15 c.T1408G p.L470V . . . OR2T6 254879 broad.mit.edu 36 1 246618271 246618271 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005471 exon1 c.G739C p.V247L . . . GRIK3 2899 broad.mit.edu 36 1 37272209 37272209 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000831 exon1 c.C88T p.R30C . . . NOL9 79707 broad.mit.edu 36 1 6515186 6515186 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024654 exon8 c.A1459G p.S487G . . . ZZZ3 26009 broad.mit.edu 36 1 77820313 77820313 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015534 exon7 c.T1731A p.F577L . . . DNTTIP2 30836 broad.mit.edu 36 1 94110255 94110255 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014597 exon5 c.C2028A p.Y676X . . . NBPF11 200030 broad.mit.edu 36 1 146709159 146709159 + Silent SNP G A A rs3977195 unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . NBPF11 200030 broad.mit.edu 36 1 146713251 146713251 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . DEFB116 245930 broad.mit.edu 36 20 29354893 29354893 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001037731 exon2 c.G92T p.G31V . . . BACH1 571 broad.mit.edu 36 21 29621539 29621539 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_206866 exon3 c.C1523T p.T508I . . . PCDP1 200373 broad.mit.edu 36 2 120121040 120121040 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001029996 exon23 c.C1404T p.D468D . . . NEUROD1 4760 broad.mit.edu 36 2 182251008 182251008 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002500 exon2 c.G825A p.P275P . . . SDPR 8436 broad.mit.edu 36 2 192409646 192409646 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004657 exon2 c.G526A p.V176I . . . FZD7 8324 broad.mit.edu 36 2 202608998 202608998 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003507 exon1 c.C1383T p.T461T . . . ERBB4 2066 broad.mit.edu 36 2 212697816 212697816 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005235 exon2 c.G140T p.R47L . . . MFSD2B 388931 broad.mit.edu 36 2 24093918 24093918 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080473 exon6 c.G637A p.E213K . . . C2orf86 51057 broad.mit.edu 36 2 63462548 63462548 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015910 exon11 c.G1621A p.E541K . . . PROKR1 10887 broad.mit.edu 36 2 68735967 68735967 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138964 exon2 c.G937A p.V313M . . . STXBP5L 9515 broad.mit.edu 36 3 122435209 122435209 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014980 exon12 c.G1168T p.D390Y . . . RHO 6010 broad.mit.edu 36 3 130730452 130730452 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000539 exon1 c.C186T p.T62T . . . NPHP3 27031 broad.mit.edu 36 3 133914796 133914796 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153240 exon6 c.A982C p.M328L . . . ATP13A4 84239 broad.mit.edu 36 3 194603228 194603228 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032279 exon30 c.G3498A p.P1166P . . . SHQ1 55164 broad.mit.edu 36 3 72949147 72949147 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018130 exon7 c.G806A p.R269H . . . MUC20 200958 broad.mit.edu 36 3 196938689 196938689 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001098516 exon2 c.926delC p.A309fs . . . PHF17 79960 broad.mit.edu 36 4 129998014 129998014 + Silent SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199320 exon8 c.G936A p.A312A . . . FBXW7 55294 broad.mit.edu 36 4 153471441 153471441 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018315 exon6 c.A775T p.R259X . . . GC 2638 broad.mit.edu 36 4 72839668 72839668 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000583 exon9 c.G1055A p.R352K . . . FRAS1 80144 broad.mit.edu 36 4 79407101 79407101 + Silent SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025074 exon8 c.G777A p.L259L . . . HERC5 51191 broad.mit.edu 36 4 89603772 89603772 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_016323 exon5 c.G755A p.G252D . . . GRID2 2895 broad.mit.edu 36 4 94225285 94225285 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001510 exon3 c.C361T p.R121C . . . PDLIM5 10611 broad.mit.edu 36 4 95716033 95716033 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006457 exon5 c.C535A p.L179M . . . WDR36 134430 broad.mit.edu 36 5 110487732 110487732 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_139281 exon21 c.G2464C p.A822P . . . APC 324 broad.mit.edu 36 5 112179160 112179160 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127511 exon7 c.C850T p.R284X APC,large_intestine,colon,Substitution - Nonsense,0 . . APC 324 broad.mit.edu 36 5 112203538 112203538 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127511 exon14 c.C4294T p.R1432X APC,large_intestine,rectum,Substitution - Nonsense,0 . . SNX2 6643 broad.mit.edu 36 5 122191175 122191175 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003100 exon14 c.C1444T p.R482X . . . PCDHA1 56147 broad.mit.edu 36 5 140147915 140147915 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031410 exon1 c.G1856A p.R619H . . . FAM193B 54540 broad.mit.edu 36 5 176898536 176898536 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001190946 exon2 c.G429A p.Q143Q . . . MTMR12 54545 broad.mit.edu 36 5 32283979 32283979 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001040446 exon10 c.A907G p.T303A . . . UGT3A2 167127 broad.mit.edu 36 5 36102588 36102588 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001168316 exon1 c.G61C p.E21Q . . . RAB3C 115827 broad.mit.edu 36 5 58057635 58057635 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138453 exon3 c.G302A p.R101H . . . CHD1 1105 broad.mit.edu 36 5 98260045 98260045 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001270 exon11 c.G1495A p.G499R . . . ESR1 2099 broad.mit.edu 36 6 152205441 152205441 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001122740 exon3 c.C469T p.R157X . . . SYNE1 23345 broad.mit.edu 36 6 152599111 152599111 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015293 exon25 c.T3792G p.N1264K . . . ETV1 2115 broad.mit.edu 36 7 13945362 13945362 + Silent SNP T C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001163147 exon6 c.A270G p.K90K . . . GIMAP1 170575 broad.mit.edu 36 7 150048642 150048642 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_130759 exon3 c.G617A p.G206E . . . DFNA5 1687 broad.mit.edu 36 7 24750893 24750893 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127453 exon3 c.G217A p.V73M . . . EGFR 1956 broad.mit.edu 36 7 55191034 55191034 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_201282 exon8 c.G907C p.D303H . . . ZNF804B 219578 broad.mit.edu 36 7 88802407 88802407 + Silent SNP T A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_181646 exon4 c.T2175A p.T725T . . . ANGPT1 284 broad.mit.edu 36 8 108428470 108428470 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001146 exon2 c.C329T p.S110L . . . TCEA1 6917 broad.mit.edu 36 8 55063299 55063299 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_201437 exon4 c.C331T p.R111W . . . SULF1 23213 broad.mit.edu 36 8 70696012 70696012 + Silent SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001128205 exon14 c.G1566A p.R522R . . . MTERFD1 51001 broad.mit.edu 36 8 97321075 97321075 + Silent SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015942 exon8 c.G1074A p.R358R . . . OR13C5 138799 broad.mit.edu 36 9 106400699 106400699 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001004482 exon1 c.T817A p.L273M . . . PAPPA 5069 broad.mit.edu 36 9 118037622 118037622 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002581 exon7 c.G2617A p.A873T . . . CIZ1 25792 broad.mit.edu 36 9 129971577 129971577 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001131015 exon14 c.C1906T p.R636C . . . DDX58 23586 broad.mit.edu 36 9 32481320 32481320 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014314 exon5 c.G670A p.E224K . . . ROR2 4920 broad.mit.edu 36 9 93526974 93526974 + Silent SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004560 exon9 c.C1623T p.G541G . . . RGAG1 57529 broad.mit.edu 36 X 109582324 109582324 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020769 exon3 c.C1823A p.S608Y . . . IGSF1 3547 broad.mit.edu 36 X 130237884 130237884 + Silent SNP A G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001170962 exon14 c.T2601C p.T867T . . . AFF2 2334 broad.mit.edu 36 X 147551700 147551700 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002025 exon3 c.G760A p.V254M . . . AFF2 2334 broad.mit.edu 36 X 147847601 147847601 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002025 exon12 c.A2603T p.K868M . . . MECP2 4204 broad.mit.edu 36 X 152949471 152949471 + Silent SNP T C C novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004992 exon4 c.A1002G p.K334K . . . TMLHE 55217 broad.mit.edu 36 X 154389831 154389831 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001184797 exon6 c.G917C p.G306A . . . DMD 1756 broad.mit.edu 36 X 32626034 32626034 + Silent SNP G T T novel unknown TCGA-AA-3982-01A-02W-0995-10 TCGA-AA-3982-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004006 exon9 c.C834A p.I278I . . .