Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target ADRA2A 150 broad.mit.edu 36 10 112827845 112827846 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000681 exon1 c.101_102insG p.P34fs . . . DHTKD1 55526 broad.mit.edu 36 10 12166679 12166679 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_018706 exon3 c.C445T p.R149W . . . ITGB1 3688 broad.mit.edu 36 10 33264476 33264476 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_133376 exon2 c.T17G p.I6S . . . PCDH15 65217 broad.mit.edu 36 10 55582869 55582869 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001142767 exon13 c.G1670A p.R557Q . . . TECTA 7007 broad.mit.edu 36 11 120503943 120503943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005422 exon8 c.G2047A p.V683I . . . ANO3 63982 broad.mit.edu 36 11 26494967 26494967 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_031418 exon6 c.C609T p.P203P . . . RAG1 5896 broad.mit.edu 36 11 36553439 36553439 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000448 exon2 c.C2009T p.T670M . . . OR4A15 81328 broad.mit.edu 36 11 54892701 54892701 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005275 exon1 c.C766A p.Q256K . . . OR52H1 390067 broad.mit.edu 36 11 5522651 5522651 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005289 exon1 c.G679A p.A227T . . . TSGA10IP 254187 broad.mit.edu 36 11 65472164 65472164 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152762 exon4 c.C1120T p.R374C . . . RPH3A 22895 broad.mit.edu 36 12 111798871 111798871 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014954 exon12 c.G976C p.E326Q . . . RILPL1 353116 broad.mit.edu 36 12 122536273 122536273 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178314 exon5 c.C834T p.D278D . . . ZNF10 7556 broad.mit.edu 36 12 132242169 132242169 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015394 exon5 c.G264T p.E88D . . . CACNA1C 775 broad.mit.edu 36 12 2576898 2576898 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001129835 exon21 c.T2828C p.I943T . . . ERBB3 2065 broad.mit.edu 36 12 54765121 54765121 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001005915 exon3 c.G310A p.V104M ERBB3,ovary,NS,Substitution - Missense,0 . . IL26 55801 broad.mit.edu 36 12 66905243 66905243 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018402 exon3 c.C316T p.R106C . . . BBS10 79738 broad.mit.edu 36 12 75265187 75265187 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024685 exon2 c.G709T p.A237S . . . AMDHD1 144193 broad.mit.edu 36 12 94874809 94874809 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152435 exon4 c.C525T p.R175R . . . THSD1 55901 broad.mit.edu 36 13 51850408 51850408 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018676 exon5 c.G1698A p.A566A . . . SLITRK1 114798 broad.mit.edu 36 13 83353489 83353489 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_052910 exon1 c.G155A p.R52H . . . GPC5 2262 broad.mit.edu 36 13 90899157 90899157 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004466 exon2 c.G305A p.R102Q . . . RNASE10 338879 broad.mit.edu 36 14 20048671 20048671 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001012975 exon1 c.G201A p.T67T . . . GCOM1 145781 broad.mit.edu 36 15 55709309 55709309 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152451 exon6 c.G643A p.V215I . . . COQ9 57017 broad.mit.edu 36 16 56044313 56044313 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020312 exon3 c.C342A p.H114Q . . . CDH8 1006 broad.mit.edu 36 16 60246915 60246915 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001796 exon11 c.C1866T p.G622G . . . CDH11 1009 broad.mit.edu 36 16 63590136 63590136 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001797 exon4 c.G353A p.R118Q . . . CHST4 10164 broad.mit.edu 36 16 70128716 70128716 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001166395 exon2 c.G635A p.R212H . . . PKD1L2 114780 broad.mit.edu 36 16 79807389 79807389 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_052892 exon2 c.C425T p.S142L . . . KCNJ12 3768 broad.mit.edu 36 17 21259702 21259702 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_021012 exon3 c.C455T p.T152M . . . KRTAP4-12 83755 broad.mit.edu 36 17 36533613 36533613 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031854 exon1 c.C288T p.C96C . . . TP53 7157 broad.mit.edu 36 17 7517867 7517867 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126114 exon8 c.G796T p.G266X TP53,central_nervous_system,brain,Substitution - Missense,0 . . ZNF521 25925 broad.mit.edu 36 18 21058423 21058423 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015461 exon4 c.C3457A p.L1153I . . . CNN1 1264 broad.mit.edu 36 19 11512941 11512941 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001299 exon2 c.C114T p.I38I . . . ZNF208 7757 broad.mit.edu 36 19 21946502 21946502 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007153 exon4 c.A3174C p.K1058N . . . CD22 933 broad.mit.edu 36 19 40524447 40524447 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001185100 exon9 c.G1774A p.A592T . . . HKR1 284459 broad.mit.edu 36 19 42545359 42545359 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_181786 exon6 c.G822A p.M274I . . . PSG7 5676 broad.mit.edu 36 19 48125612 48125612 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002783 exon3 c.C531A p.S177R . . . NLRP12 91662 broad.mit.edu 36 19 59005740 59005740 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_144687 exon3 c.C985T p.R329W . . . MLLT1 4298 broad.mit.edu 36 19 6181614 6181614 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005934 exon4 c.G387A p.T129T . . . INSR 3643 broad.mit.edu 36 19 7077641 7077641 + Silent SNP T C C novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000208 exon16 c.A2967G p.G989G . . . OLFM2 93145 broad.mit.edu 36 19 9826378 9826378 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_058164 exon6 c.C849T p.Y283Y . . . PYGO2 90780 broad.mit.edu 36 1 153198651 153198652 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138300 exon3 c.449_450insC p.Q150fs . . . SORT1 6272 broad.mit.edu 36 1 109684897 109684897 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002959 exon10 c.C1236T p.G412G . . . NRAS 4893 broad.mit.edu 36 1 115058053 115058053 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002524 exon3 c.C181A p.Q61K NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 . . LRRC7 57554 broad.mit.edu 36 1 70277778 70277778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020794 exon19 c.C3569T p.P1190L . . . NEXN 91624 broad.mit.edu 36 1 78171672 78171672 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_144573 exon10 c.C1171T p.R391X . . . LPPR4 9890 broad.mit.edu 36 1 99544586 99544586 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014839 exon7 c.G1724A p.R575Q . . . NBPF11 200030 broad.mit.edu 36 1 146709093 146709093 + Splice_Site SNP C T T rs4350200 unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . C20orf71 128861 broad.mit.edu 36 20 31275397 31275397 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_178466 exon2 c.G247A p.G83S . . . SLC32A1 140679 broad.mit.edu 36 20 36789861 36789861 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_080552 exon2 c.C743T p.T248M . . . TSHZ2 128553 broad.mit.edu 36 20 51306338 51306338 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G C G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_173485 exon2 c.G2934C p.Q978H . . . PDGFB 5155 broad.mit.edu 36 22 37951728 37951728 + Silent SNP C A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033016 exon6 c.G627T p.R209R . . . SNTG2 54221 broad.mit.edu 36 2 1194905 1194905 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018968 exon9 c.G708A p.T236T . . . ALK 238 broad.mit.edu 36 2 29460204 29460204 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004304 exon5 c.G1180A p.G394R . . . ZBTB11 27107 broad.mit.edu 36 3 102867221 102867221 + Silent SNP G T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014415 exon4 c.C900A p.V300V . . . TF 7018 broad.mit.edu 36 3 134977125 134977125 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001063 exon15 c.G1846A p.V616I . . . CLSTN2 64084 broad.mit.edu 36 3 141758154 141758154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_022131 exon11 c.C1784T p.T595M . . . OTOL1 131149 broad.mit.edu 36 3 162704174 162704174 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001080440 exon4 c.C1184T p.T395M . . . TTC14 151613 broad.mit.edu 36 3 181810776 181810776 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_133462 exon12 c.G2065A p.A689T . . . CLCN2 1181 broad.mit.edu 36 3 185559465 185559465 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004366 exon2 c.G212A p.R71Q . . . LRRC3B 116135 broad.mit.edu 36 3 26726182 26726182 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052953 exon2 c.C15T p.D5D . . . FBXL2 25827 broad.mit.edu 36 3 33375498 33375498 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001171713 exon3 c.G101A p.R34Q . . . TRANK1 9881 broad.mit.edu 36 3 36873489 36873489 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014831 exon12 c.C2596T p.R866X . . . GPX1 2876 broad.mit.edu 36 3 49369948 49369948 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000581 exon2 c.C489G p.N163K . . . LRTM1 57408 broad.mit.edu 36 3 54933835 54933835 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020678 exon2 c.C455T p.A152V . . . ROBO1 6091 broad.mit.edu 36 3 78793892 78793892 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002941 exon15 c.G2029T p.V677F . . . FAT4 79633 broad.mit.edu 36 4 126555756 126555756 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C A C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_024582 exon5 c.C6188A p.T2063K . . . TBC1D9 23158 broad.mit.edu 36 4 141817507 141817507 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015130 exon6 c.G1050A p.P350P . . . TMEM144 55314 broad.mit.edu 36 4 159355829 159355829 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018342 exon4 c.G146A p.W49X . . . MAN2A1 4124 broad.mit.edu 36 5 109153107 109153107 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002372 exon12 c.A1923G p.I641M . . . APC 324 broad.mit.edu 36 5 112201891 112201891 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001127511 exon14 c.C2647T p.Q883X . . . DMXL1 1657 broad.mit.edu 36 5 118497696 118497696 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005509 exon12 c.C2178T p.A726A . . . PCDHB15 56121 broad.mit.edu 36 5 140606860 140606860 + Silent SNP C T T rs17844572 unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018935 exon1 c.C1530T p.N510N . . . PCDHGA2 56113 broad.mit.edu 36 5 140700590 140700590 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032009 exon1 c.C1868T p.T623M . . . PDGFRB 5159 broad.mit.edu 36 5 149496792 149496792 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002609 exon2 c.G12A p.P4P . . . APC 324 broad.mit.edu 36 5 112203429 112203429 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127511 exon14 c.4185delG p.M1395fs . . . DDO 8528 broad.mit.edu 36 6 110820734 110820734 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003649 exon5 c.C1047T p.A349A . . . AHI1 54806 broad.mit.edu 36 6 135805468 135805468 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017651 exon13 c.C1857T p.H619H . . . HDGFL1 154150 broad.mit.edu 36 6 22677828 22677828 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_138574 exon1 c.G45A p.V15V . . . SRSF12 135295 broad.mit.edu 36 6 89865022 89865022 + Silent SNP A G G novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080743 exon5 c.T780C p.S260S . . . IMMP2L 83943 broad.mit.edu 36 7 110313988 110313989 + Splice_Site INS - A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . FAM188B 84182 broad.mit.edu 36 7 30834868 30834868 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032222 exon6 c.C1122T p.A374A . . . PCLO 27445 broad.mit.edu 36 7 82417552 82417552 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_033026 exon6 c.A10288G p.M3430V . . . NOS3 4846 broad.mit.edu 36 7 150337233 150337233 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000603 exon19 c.2269delA p.K757fs . . . ZHX2 22882 broad.mit.edu 36 8 124035299 124035299 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014943 exon3 c.G2368A p.V790I . . . HR 55806 broad.mit.edu 36 8 22036012 22036012 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018411 exon8 c.G2060A p.R687Q . . . STMN4 81551 broad.mit.edu 36 8 27154532 27154532 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030795 exon5 c.G355A p.E119K . . . OPRK1 4986 broad.mit.edu 36 8 54304798 54304798 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000912 exon4 c.G755A p.R252H . . . OR13C9 286362 broad.mit.edu 36 9 106419781 106419781 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001001956 exon1 c.C526T p.H176Y . . . EPB41L4B 54566 broad.mit.edu 36 9 111043887 111043887 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018424 exon16 c.C1433T p.S478L . . . SVEP1 79987 broad.mit.edu 36 9 112248018 112248018 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153366 exon26 c.C4383T p.D1461D . . . C9orf114 51490 broad.mit.edu 36 9 130630947 130630947 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_016390 exon3 c.A96T p.K32N . . . FIBCD1 84929 broad.mit.edu 36 9 132770527 132770527 + Silent SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145106 exon7 c.C1041T p.Y347Y . . . NTNG2 84628 broad.mit.edu 36 9 134092141 134092141 + Silent SNP C T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032536 exon4 c.C942T p.P314P . . . UNC13B 10497 broad.mit.edu 36 9 35227788 35227788 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 A A A C A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006377 exon5 c.A359C p.K120T . . . ARSH 347527 broad.mit.edu 36 X 2946583 2946583 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001011719 exon5 c.G773A p.R258K . . . CYBB 1536 broad.mit.edu 36 X 37537990 37537990 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000397 exon5 c.G470A p.R157Q . . . MED12 9968 broad.mit.edu 36 X 70255428 70255428 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3976-01A-01W-0995-10 TCGA-AA-3976-10A-01W-0999-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005120 exon1 c.G99T p.E33D . . .