Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target ABLIM1 3983 broad.mit.edu 36 10 116325258 116325258 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002313 exon3 c.G470A p.R157H . . . SEC23IP 11196 broad.mit.edu 36 10 121667356 121667356 + Silent SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007190 exon9 c.T1563G p.T521T . . . MKI67 4288 broad.mit.edu 36 10 129803485 129803485 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002417 exon7 c.A1177G p.R393G . . . UCMA 221044 broad.mit.edu 36 10 13304123 13304123 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145314 exon5 c.C403T p.R135C . . . PPP2R2D 55844 broad.mit.edu 36 10 133611113 133611113 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018461 exon6 c.C812A p.A271E . . . FAM171A1 221061 broad.mit.edu 36 10 15296381 15296381 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010924 exon8 c.G1212A p.P404P . . . PTER 9317 broad.mit.edu 36 10 16566742 16566742 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001484 exon3 c.G353A p.G118D . . . ARHGAP21 57584 broad.mit.edu 36 10 24920216 24920216 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020824 exon24 c.T4094C p.I1365T . . . THNSL1 79896 broad.mit.edu 36 10 25353810 25353810 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024838 exon3 c.T1652C p.L551P . . . MYO3A 53904 broad.mit.edu 36 10 26483702 26483702 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon25 c.C2737T p.R913C . . . MYO3A 53904 broad.mit.edu 36 10 26531975 26531975 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon34 c.A4663G p.S1555G . . . GAD2 2572 broad.mit.edu 36 10 26615380 26615380 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134366 exon13 c.G1337A p.C446Y . . . PDSS1 23590 broad.mit.edu 36 10 27038669 27038669 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014317 exon5 c.G433A p.A145T . . . ARMC4 55130 broad.mit.edu 36 10 28141555 28141555 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018076 exon20 c.A3027G p.L1009L . . . ARMC4 55130 broad.mit.edu 36 10 28290548 28290548 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018076 exon10 c.G1341A p.L447L . . . KIAA1462 57608 broad.mit.edu 36 10 30355488 30355488 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020848 exon3 c.A3595T p.K1199X . . . CUL2 8453 broad.mit.edu 36 10 35360553 35360553 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198777 exon13 c.C1171T p.L391F . . . OR13A1 79290 broad.mit.edu 36 10 45119428 45119428 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004297 exon4 c.A449G p.Y150C . . . FAM21C 253725 broad.mit.edu 36 10 45600024 45600024 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001169106 exon24 c.C2484T p.C828C . . . SYT15 83849 broad.mit.edu 36 10 46382000 46382000 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031912 exon8 c.G1242A p.A414A . . . FRMPD2 143162 broad.mit.edu 36 10 49041508 49041508 + Silent SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018071 exon28 c.A3750T p.T1250T . . . PGBD3 267004 broad.mit.edu 36 10 50394508 50394508 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170753 exon2 c.A659T p.D220V . . . CSTF2T 23283 broad.mit.edu 36 10 53128420 53128420 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015235 exon1 c.C896A p.P299H . . . UCN3 114131 broad.mit.edu 36 10 5405789 5405789 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053049 exon2 c.C106T p.L36F . . . PCDH15 65217 broad.mit.edu 36 10 55252235 55252235 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142767 exon31 c.A5137G p.I1713V . . . REEP3 221035 broad.mit.edu 36 10 65027804 65027804 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001330 exon4 c.A197G p.Y66C . . . CTNNA3 29119 broad.mit.edu 36 10 68610128 68610128 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013266 exon7 c.G1000A p.A334T . . . TET1 80312 broad.mit.edu 36 10 70076616 70076616 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030625 exon4 c.T4124C p.V1375A . . . CCAR1 55749 broad.mit.edu 36 10 70183626 70183626 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018237 exon11 c.A1130G p.D377G . . . UNC5B 219699 broad.mit.edu 36 10 72721473 72721473 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170744 exon10 c.C1573T p.R525C . . . SFMBT2 57713 broad.mit.edu 36 10 7449789 7449789 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029880 exon4 c.G264A p.P88P . . . MYST4 23522 broad.mit.edu 36 10 76460377 76460377 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012330 exon18 c.C5789T p.A1930V . . . ITIH5 80760 broad.mit.edu 36 10 7658940 7658940 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030569 exon10 c.G1460A p.R487H . . . RGR 5995 broad.mit.edu 36 10 86002619 86002619 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012720 exon4 c.G385A p.V129I . . . BMPR1A 657 broad.mit.edu 36 10 88673149 88673149 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004329 exon12 c.T1379C p.M460T . . . KIF20B 9585 broad.mit.edu 36 10 91469344 91469344 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016195 exon13 c.C1623T p.N541N . . . TLL2 7093 broad.mit.edu 36 10 98145086 98145086 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012465 exon13 c.G1574A p.R525Q . . . PGAM1 5223 broad.mit.edu 36 10 99182225 99182225 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002629 exon4 c.G719A p.R240H . . . GBF1 8729 broad.mit.edu 36 10 104116871 104116871 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199378 exon20 c.2473delT p.F825fs . . . CPXM2 119587 broad.mit.edu 36 10 125496410 125496410 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198148 exon14 c.2131delG p.A711fs . . . MYO3A 53904 broad.mit.edu 36 10 26502766 26502766 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon30 c.3567delA p.P1189fs . . . BTAF1 9044 broad.mit.edu 36 10 93731821 93731821 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003972 exon17 c.1907delA p.E636fs . . . TM9SF3 56889 broad.mit.edu 36 10 98315095 98315095 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020123 exon3 c.377delA p.N126fs . . . CCDC15 80071 broad.mit.edu 36 11 124350258 124350259 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025004 exon5 c.573_574insA p.I191fs . . . SNX19 399979 broad.mit.edu 36 11 130283122 130283123 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014758 exon5 c.2101_2102insC p.T701fs . . . CTR9 9646 broad.mit.edu 36 11 10742737 10742737 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014633 exon12 c.G1480A p.A494T . . . ATM 472 broad.mit.edu 36 11 107692031 107692031 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000051 exon42 c.G6179A p.R2060H . . . ZC3H12C 85463 broad.mit.edu 36 11 109541634 109541634 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033390 exon6 c.G2614A p.A872T . . . ZBTB16 7704 broad.mit.edu 36 11 113440080 113440080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006006 exon2 c.C848T p.P283L . . . CADM1 23705 broad.mit.edu 36 11 114590682 114590682 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014333 exon7 c.G850A p.D284N . . . APOA5 116519 broad.mit.edu 36 11 116166157 116166157 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052968 exon4 c.G998A p.S333N . . . CEP164 22897 broad.mit.edu 36 11 116714550 116714550 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014956 exon3 c.T38G p.V13G . . . CXCR5 643 broad.mit.edu 36 11 118269745 118269745 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032966 exon1 c.C147T p.A49A . . . HYOU1 10525 broad.mit.edu 36 11 118428648 118428648 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006389 exon9 c.C898T p.R300W . . . GRIK4 2900 broad.mit.edu 36 11 120036241 120036241 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014619 exon1 c.C4T p.P2S . . . TECTA 7007 broad.mit.edu 36 11 120485240 120485240 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon3 c.G309A p.V103V . . . MUC5B 727897 broad.mit.edu 36 11 1220924 1220924 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002458 exon31 c.A6238G p.T2080A . . . MICAL2 9645 broad.mit.edu 36 11 12220892 12220892 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014632 exon20 c.G2655A p.P885P . . . OR10G4 390264 broad.mit.edu 36 11 123392328 123392328 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004462 exon1 c.G837A p.T279T . . . VWA5A 4013 broad.mit.edu 36 11 123518487 123518487 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014622 exon16 c.G2152T p.E718X . . . OR8B2 26595 broad.mit.edu 36 11 123757857 123757857 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005468 exon1 c.T593C p.V198A . . . RPUSD4 84881 broad.mit.edu 36 11 125586640 125586640 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032795 exon1 c.C104T p.A35V . . . GLB1L3 112937 broad.mit.edu 36 11 133686254 133686254 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080407 exon13 c.G1267A p.A423T . . . GLB1L2 89944 broad.mit.edu 36 11 133717893 133717893 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138342 exon2 c.G122A p.R41H . . . BRSK2 9024 broad.mit.edu 36 11 1429177 1429177 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003957 exon15 c.T1496C p.V499A . . . ABCC8 6833 broad.mit.edu 36 11 17409047 17409047 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000352 exon12 c.C1707T p.A569A . . . MRGPRX3 117195 broad.mit.edu 36 11 18116164 18116164 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054031 exon3 c.A839G p.Q280R . . . E2F8 79733 broad.mit.edu 36 11 19208090 19208090 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024680 exon10 c.A1380C p.K460N . . . FANCF 2188 broad.mit.edu 36 11 22603074 22603074 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022725 exon1 c.T859C p.Y287H . . . CCDC34 91057 broad.mit.edu 36 11 27318863 27318863 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030771 exon5 c.G863A p.R288H . . . BDNF 627 broad.mit.edu 36 11 27636287 27636287 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143805 exon2 c.G401A p.R134H . . . METT5D1 196074 broad.mit.edu 36 11 28274878 28274878 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152636 exon6 c.A602G p.Y201C . . . KCNA4 3739 broad.mit.edu 36 11 29989495 29989495 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002233 exon2 c.A1307G p.Q436R . . . HIPK3 10114 broad.mit.edu 36 11 33315253 33315253 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048200 exon4 c.T1278C p.G426G . . . PAMR1 25891 broad.mit.edu 36 11 35410851 35410851 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001991 exon11 c.G1792T p.V598L . . . NUP98 4928 broad.mit.edu 36 11 3701029 3701029 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005387 exon16 c.C2131A p.H711N . . . OR52B4 143496 broad.mit.edu 36 11 4345281 4345281 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005161 exon1 c.T821C p.I274T . . . LRP4 4038 broad.mit.edu 36 11 46868419 46868419 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002334 exon14 c.G1900A p.A634T . . . ARFGAP2 84364 broad.mit.edu 36 11 47146363 47146363 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032389 exon11 c.C957T p.S319S . . . MYBPC3 4607 broad.mit.edu 36 11 47327998 47327998 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000256 exon5 c.C557T p.P186L . . . OR51F1 256892 broad.mit.edu 36 11 4746883 4746883 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004752 exon1 c.G841A p.V281I . . . FNBP4 23360 broad.mit.edu 36 11 47724345 47724345 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015308 exon7 c.G1084A p.V362I . . . OR4B1 119765 broad.mit.edu 36 11 48195668 48195668 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005470 exon1 c.T731C p.V244A . . . OR51A7 119687 broad.mit.edu 36 11 4885876 4885876 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004749 exon1 c.T701C p.L234P . . . MMP26 56547 broad.mit.edu 36 11 4967669 4967669 + Silent SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021801 exon2 c.T315G p.T105T . . . OR51B5 282763 broad.mit.edu 36 11 5321111 5321111 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005567 exon1 c.A220G p.T74A . . . OR10AG1 282770 broad.mit.edu 36 11 55491805 55491805 + Silent SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005491 exon1 c.A711T p.I237I . . . OR5T2 219464 broad.mit.edu 36 11 55757180 55757180 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004746 exon1 c.C58A p.H20N . . . OR5M3 219482 broad.mit.edu 36 11 55994277 55994277 + Silent SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004742 exon1 c.T273G p.T91T . . . SSRP1 6749 broad.mit.edu 36 11 56851820 56851820 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003146 exon14 c.C1724T p.T575M . . . P2RX3 5024 broad.mit.edu 36 11 56892146 56892146 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002559 exon9 c.C930T p.Y310Y . . . OR52N1 79473 broad.mit.edu 36 11 5766583 5766583 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001001913 exon1 c.T40G p.F14V . . . FAM111A 63901 broad.mit.edu 36 11 58676772 58676772 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142521 exon5 c.G1055A p.R352H . . . OR10V1 390201 broad.mit.edu 36 11 59237193 59237193 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005324 exon1 c.G702A p.G234G . . . FADS3 3995 broad.mit.edu 36 11 61402605 61402605 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021727 exon5 c.C702T p.D234D . . . AHNAK 79026 broad.mit.edu 36 11 62052586 62052586 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.T5879C p.V1960A . . . B3GAT3 26229 broad.mit.edu 36 11 62140629 62140629 + Silent SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012200 exon4 c.C834A p.G278G . . . BSCL2 26580 broad.mit.edu 36 11 62216441 62216441 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130702 exon7 c.G846A p.A282A . . . SLC22A11 55867 broad.mit.edu 36 11 64093811 64093811 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018484 exon9 c.C1494T p.G498G . . . ARFIP2 23647 broad.mit.edu 36 11 6456722 6456722 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012402 exon5 c.G359T p.R120L . . . DNHD1 144132 broad.mit.edu 36 11 6476389 6476389 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144666 exon3 c.A368G p.H123R . . . SLC25A45 283130 broad.mit.edu 36 11 64900514 64900514 + Silent SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077241 exon6 c.C681A p.A227A . . . MAP3K11 4296 broad.mit.edu 36 11 65137365 65137365 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002419 exon1 c.C439T p.R147C . . . PC 5091 broad.mit.edu 36 11 66375301 66375301 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040716 exon17 c.G2009A p.G670D . . . INPPL1 3636 broad.mit.edu 36 11 71625886 71625886 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001567 exon26 c.C2950A p.P984T . . . CLPB 81570 broad.mit.edu 36 11 71823072 71823072 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030813 exon1 c.C95A p.A32D . . . FCHSD2 9873 broad.mit.edu 36 11 72278552 72278552 + Silent SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014824 exon11 c.T1011G p.R337R . . . P2RY2 5029 broad.mit.edu 36 11 72623526 72623526 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176072 exon3 c.T674C p.L225P . . . OLFML1 283298 broad.mit.edu 36 11 7487984 7487984 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198474 exon3 c.C1198A p.P400T . . . NLRP10 338322 broad.mit.edu 36 11 7938049 7938049 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176821 exon2 c.T1686G p.D562E . . . GRM5 2915 broad.mit.edu 36 11 87977704 87977704 + Silent SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000842 exon5 c.C1224A p.A408A . . . FOLH1B 219595 broad.mit.edu 36 11 89044781 89044781 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153696 exon5 c.T260C p.V87A . . . SCUBE2 57758 broad.mit.edu 36 11 9052710 9052710 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020974 exon4 c.C411T p.G137G . . . FAT3 120114 broad.mit.edu 36 11 91726982 91726982 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon1 c.A2056G p.T686A . . . FAT3 120114 broad.mit.edu 36 11 91727069 91727069 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon1 c.T2143G p.F715V . . . AMOTL1 154810 broad.mit.edu 36 11 94232373 94232373 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130847 exon9 c.A1980C p.E660D . . . MUC5B 727897 broad.mit.edu 36 11 1222024 1222025 + Frame_Shift_Del DEL TG - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 TG TG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002458 exon31 c.7338_7339del p.2446_2447del . . . CDON 50937 broad.mit.edu 36 11 125369414 125369414 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016952 exon14 c.2625delT p.S875fs . . . KRTAP5-3 387266 broad.mit.edu 36 11 1586103 1586103 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012708 exon1 c.89delG p.G30fs . . . MADD 8567 broad.mit.edu 36 11 47263245 47263245 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003682 exon13 c.2335delT p.F779fs . . . VEGFB 7423 broad.mit.edu 36 11 63761239 63761239 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003377 exon5 c.379delA p.K127fs . . . LOC643923 643923 broad.mit.edu 36 11 106968392 106968392 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . UTP20 27340 broad.mit.edu 36 12 100290863 100290863 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014503 exon52 c.C6869T p.A2290V . . . C12orf42 374470 broad.mit.edu 36 12 102224130 102224130 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099336 exon5 c.G383A p.R128H . . . KLRK1 22914 broad.mit.edu 36 12 10422513 10422513 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199805 exon11 c.A336T p.Q112H . . . PWP1 11137 broad.mit.edu 36 12 106622586 106622586 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007062 exon11 c.C1009T p.R337X . . . ANAPC7 51434 broad.mit.edu 36 12 109299743 109299743 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137664 exon9 c.G1297A p.V433I . . . CUX2 23316 broad.mit.edu 36 12 110270280 110270280 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015267 exon22 c.T4229A p.V1410E . . . ATXN2 6311 broad.mit.edu 36 12 110375008 110375008 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002973 exon25 c.G3933T p.Q1311H . . . ACAD10 80724 broad.mit.edu 36 12 110671419 110671419 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025247 exon18 c.G2704T p.G902C . . . C12orf51 283450 broad.mit.edu 36 12 111084609 111084609 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109662 exon75 c.G12706A p.A4236T . . . C12orf51 283450 broad.mit.edu 36 12 111139078 111139078 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109662 exon46 c.G6751A p.V2251I . . . MAP1LC3B2 643246 broad.mit.edu 36 12 115498184 115498184 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085481 exon2 c.A54C p.E18D . . . CIT 11113 broad.mit.edu 36 12 118657394 118657394 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon24 c.G2984A p.R995H . . . CIT 11113 broad.mit.edu 36 12 118674321 118674321 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon22 c.G2695A p.A899T . . . GCN1L1 10985 broad.mit.edu 36 12 119058838 119058838 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006836 exon51 c.T6859C p.L2287L . . . ETV6 2120 broad.mit.edu 36 12 11913951 11913951 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001987 exon5 c.C790T p.R264C . . . SRSF9 8683 broad.mit.edu 36 12 119386252 119386252 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003769 exon3 c.G406A p.D136N . . . MLEC 9761 broad.mit.edu 36 12 119618551 119618551 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014730 exon5 c.A699G p.E233E . . . P2RX7 5027 broad.mit.edu 36 12 120088281 120088281 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002562 exon7 c.T652G p.F218V . . . CLIP1 6249 broad.mit.edu 36 12 121428102 121428102 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198240 exon3 c.G444A p.P148P . . . RSRC2 65117 broad.mit.edu 36 12 121567754 121567754 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023012 exon5 c.G575A p.S192N . . . DNAH10 196385 broad.mit.edu 36 12 122943745 122943745 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon52 c.C8654T p.A2885V . . . SFSWAP 6433 broad.mit.edu 36 12 130807032 130807032 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004592 exon11 c.G1610C p.G537A . . . PUS1 80324 broad.mit.edu 36 12 130982770 130982770 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025215 exon3 c.T401C p.M134T . . . ATF7IP 55729 broad.mit.edu 36 12 14504784 14504784 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018179 exon9 c.A2247G p.A749A . . . SLCO1C1 53919 broad.mit.edu 36 12 20750174 20750174 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017435 exon4 c.T296G p.V99G . . . SLCO1B3 28234 broad.mit.edu 36 12 20923700 20923700 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019844 exon10 c.T1199A p.F400Y . . . SLCO1B3 28234 broad.mit.edu 36 12 21120684 21120684 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009562 exon12 c.T1638C p.A546A . . . CASC1 55259 broad.mit.edu 36 12 25163501 25163501 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082972 exon12 c.T1415C p.I472T . . . KDM5A 5927 broad.mit.edu 36 12 265010 265010 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042603 exon28 c.A4946T p.E1649V . . . CACNA1C 775 broad.mit.edu 36 12 2670438 2670438 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129842 exon47 c.G6229A p.A2077T . . . C12orf11 55726 broad.mit.edu 36 12 26957868 26957868 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018164 exon14 c.A1594G p.M532V . . . TMTC1 83857 broad.mit.edu 36 12 29551080 29551080 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193451 exon18 c.G2615A p.R872Q . . . CAPRIN2 65981 broad.mit.edu 36 12 30754280 30754280 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002259 exon18 c.G3207T p.E1069D . . . TSPAN11 441631 broad.mit.edu 36 12 31008124 31008124 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080509 exon3 c.G181A p.A61T . . . DENND5B 160518 broad.mit.edu 36 12 31468767 31468767 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144973 exon10 c.G2360T p.R787M . . . C12orf35 55196 broad.mit.edu 36 12 32025863 32025863 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018169 exon4 c.T707C p.F236S . . . TSPAN9 10867 broad.mit.edu 36 12 3262538 3262538 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001168320 exon8 c.G715A p.A239T . . . PDZRN4 29951 broad.mit.edu 36 12 40235768 40235768 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164595 exon7 c.T1304G p.V435G . . . PDZRN4 29951 broad.mit.edu 36 12 40252650 40252650 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164595 exon10 c.A1802G p.Q601R . . . CCDC77 84318 broad.mit.edu 36 12 420316 420316 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130148 exon10 c.C1117T p.R373C . . . SCN8A 6334 broad.mit.edu 36 12 50379667 50379667 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014191 exon7 c.G753A p.L251L . . . KRT5 3852 broad.mit.edu 36 12 51200026 51200026 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000424 exon1 c.G322A p.G108S . . . KRT74 121391 broad.mit.edu 36 12 51253611 51253611 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175053 exon1 c.A218G p.Y73C . . . ESPL1 9700 broad.mit.edu 36 12 51969624 51969624 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012291 exon22 c.C5092T p.R1698C . . . TARBP2 6895 broad.mit.edu 36 12 52183776 52183776 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004178 exon4 c.C276T p.P92P TARBP2,central_nervous_system,brain,Substitution - Missense,+1 . . KIAA0748 9840 broad.mit.edu 36 12 53643974 53643974 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098815 exon8 c.A474C p.Q158H . . . OR6C74 254783 broad.mit.edu 36 12 53928114 53928114 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005490 exon1 c.A776G p.K259R . . . OR6C65 403282 broad.mit.edu 36 12 54081316 54081316 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005518 exon1 c.T737G p.V246G . . . MYL6B 140465 broad.mit.edu 36 12 54835193 54835193 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199629 exon4 c.G290A p.G97D . . . MYL6 4637 broad.mit.edu 36 12 54840144 54840144 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021019 exon4 c.G294A p.K98K . . . SMARCC2 6601 broad.mit.edu 36 12 54851932 54851932 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139067 exon21 c.C1983T p.R661R . . . ANKRD52 283373 broad.mit.edu 36 12 54934674 54934674 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173595 exon7 c.T648C p.S216S . . . TIMELESS 8914 broad.mit.edu 36 12 55101494 55101494 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003920 exon23 c.C2776T p.R926X . . . DCTN2 10540 broad.mit.edu 36 12 56212827 56212827 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006400 exon10 c.G809A p.R270H . . . AVIL 10677 broad.mit.edu 36 12 56483323 56483323 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006576 exon15 c.G1936A p.V646M . . . CD27 939 broad.mit.edu 36 12 6429727 6429727 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001242 exon3 c.G396A p.S132S . . . HELB 92797 broad.mit.edu 36 12 64990065 64990065 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033647 exon4 c.G1090A p.A364T . . . CHD4 1108 broad.mit.edu 36 12 6557542 6557542 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001273 exon36 c.T5142C p.N1714N . . . C12orf53 196500 broad.mit.edu 36 12 6675943 6675943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153685 exon4 c.C532T p.P178S . . . RAP1B 5908 broad.mit.edu 36 12 67330493 67330493 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015646 exon3 c.C104T p.T35M . . . TBC1D15 64786 broad.mit.edu 36 12 70564953 70564953 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146214 exon6 c.T463C p.W155R . . . TPH2 121278 broad.mit.edu 36 12 70711669 70711669 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173353 exon11 c.T1400C p.V467A . . . CD163 9332 broad.mit.edu 36 12 7540896 7540896 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203416 exon5 c.C879T p.D293D . . . C12orf74 338809 broad.mit.edu 36 12 91624682 91624682 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037671 exon2 c.G144A p.S48S . . . CRADD 8738 broad.mit.edu 36 12 92596854 92596854 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003805 exon2 c.T173C p.L58P . . . USP44 84101 broad.mit.edu 36 12 94450929 94450929 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042403 exon2 c.T1235C p.L412P . . . SLC25A3 5250 broad.mit.edu 36 12 97513750 97513750 + Missense_Mutation SNP G A A rs11544654 unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002635 exon3 c.G272A p.R91H . . . GAS2L3 283431 broad.mit.edu 36 12 99542713 99542713 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_174942 exon10 c.A1999G p.S667G . . . LRP6 4040 broad.mit.edu 36 12 12288799 12288800 + Frame_Shift_Del DEL TT - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 TT TT TT - TT TT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002336 exon2 c.112_113del p.38_38del . . . C12orf11 55726 broad.mit.edu 36 12 26960293 26960293 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018164 exon11 c.1157delT p.L386fs . . . LRRK2 120892 broad.mit.edu 36 12 39000137 39000137 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198578 exon34 c.4908delA p.S1636fs . . . ANO6 196527 broad.mit.edu 36 12 44109298 44109298 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001025356 exon20 c.2670delG p.M890fs . . . AMIGO2 347902 broad.mit.edu 36 12 45758652 45758652 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_181847 exon2 c.401delA p.N134fs . . . SENP1 29843 broad.mit.edu 36 12 46745163 46745163 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014554 exon12 c.1227delA p.K409fs . . . XPOT 11260 broad.mit.edu 36 12 63099022 63099022 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007235 exon6 c.370delT p.F124fs . . . ATN1 1822 broad.mit.edu 36 12 6915915 6915915 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001007026 exon5 c.1224delC p.Y408fs . . . LGR5 8549 broad.mit.edu 36 12 70233151 70233151 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003667 exon5 c.460delC p.P154fs . . . C1RL 51279 broad.mit.edu 36 12 7140542 7140542 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016546 exon6 c.1051delC p.L351fs . . . NAV3 89795 broad.mit.edu 36 12 76924937 76924937 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014903 exon8 c.1488delA p.P496fs . . . UHRF1BP1L 23074 broad.mit.edu 36 12 98975989 98975989 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015054 exon14 c.3197delG p.S1066fs . . . ERCC5 2073 broad.mit.edu 36 13 102316241 102316241 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000123 exon9 c.T2178C p.H726H . . . RAB20 55647 broad.mit.edu 36 13 109974076 109974076 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017817 exon2 c.A642G p.S214S . . . TUBGCP3 10426 broad.mit.edu 36 13 112261653 112261653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006322 exon4 c.G314A p.R105H . . . SGCG 6445 broad.mit.edu 36 13 22792858 22792858 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000231 exon7 c.C661T p.L221F . . . FLT1 2321 broad.mit.edu 36 13 27899431 27899431 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002019 exon10 c.C1301T p.A434V . . . SLC7A1 6541 broad.mit.edu 36 13 29008280 29008280 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003045 exon3 c.C46T p.R16W . . . KATNAL1 84056 broad.mit.edu 36 13 29682499 29682499 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032116 exon10 c.G1228A p.E410K . . . CSNK1A1L 122011 broad.mit.edu 36 13 36576718 36576718 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145203 exon1 c.G676A p.A226T . . . POSTN 10631 broad.mit.edu 36 13 37046762 37046762 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006475 exon17 c.A2036T p.E679V . . . TRPC4 7223 broad.mit.edu 36 13 37109683 37109683 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135956 exon10 c.C2096A p.S699Y . . . FAM124A 220108 broad.mit.edu 36 13 50723736 50723736 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145019 exon4 c.C340T p.L114L . . . PCDH9 5101 broad.mit.edu 36 13 66700320 66700320 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020403 exon2 c.T254G p.I85S . . . MYCBP2 23077 broad.mit.edu 36 13 76640632 76640632 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015057 exon40 c.A6046G p.T2016A . . . UGGT2 55757 broad.mit.edu 36 13 95306431 95306431 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020121 exon34 c.T3990C p.I1330I . . . CLYBL 171425 broad.mit.edu 36 13 99309213 99309213 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206808 exon3 c.C347T p.A116V . . . FAM70B 348013 broad.mit.edu 36 13 113599170 113599170 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182614 exon9 c.878delC p.P293fs . . . RNF17 56163 broad.mit.edu 36 13 24260211 24260211 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184993 exon7 c.697delA p.K233fs . . . FARP1 10160 broad.mit.edu 36 13 97663539 97663539 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005766 exon2 c.42delG p.L14fs . . . DIO3 1735 broad.mit.edu 36 14 101098264 101098264 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001362 exon1 c.C678T p.V226V . . . KLC1 3831 broad.mit.edu 36 14 103193754 103193754 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130107 exon3 c.C380T p.T127M . . . MMP14 4323 broad.mit.edu 36 14 22382407 22382407 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004995 exon5 c.A790G p.M264V . . . PSMB11 122706 broad.mit.edu 36 14 22581891 22581891 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099780 exon1 c.G617A p.R206H . . . ACIN1 22985 broad.mit.edu 36 14 22619350 22619350 + Missense_Mutation SNP G A A rs12589748 byCluster TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164814 exon6 c.C1208T p.A403V . . . MYH7 4625 broad.mit.edu 36 14 22969978 22969978 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000257 exon10 c.C867T p.I289I . . . AP1G2 8906 broad.mit.edu 36 14 23105668 23105668 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003917 exon3 c.T272C p.M91T . . . DCAF11 80344 broad.mit.edu 36 14 23658837 23658837 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163484 exon11 c.T984C p.D328D . . . CLEC14A 161198 broad.mit.edu 36 14 37794282 37794282 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175060 exon1 c.G697A p.A233T . . . FANCM 57697 broad.mit.edu 36 14 44727843 44727843 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020937 exon20 c.T4868G p.V1623G . . . NIN 51199 broad.mit.edu 36 14 50306881 50306881 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182944 exon12 c.G1409A p.R470Q . . . ATG14 22863 broad.mit.edu 36 14 54906230 54906230 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014924 exon10 c.C1339A p.P447T . . . C14orf105 55195 broad.mit.edu 36 14 57017196 57017196 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018168 exon5 c.T525C p.H175H . . . GPR135 64582 broad.mit.edu 36 14 59000519 59000519 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022571 exon1 c.C1179T p.N393N . . . SPTB 6710 broad.mit.edu 36 14 64318940 64318940 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024858 exon19 c.G4087A p.E1363K . . . GPHN 10243 broad.mit.edu 36 14 66217614 66217614 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024218 exon2 c.G101A p.R34H . . . PTGR2 145482 broad.mit.edu 36 14 73416535 73416535 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146154 exon7 c.C754A p.L252M . . . TTLL5 23093 broad.mit.edu 36 14 75312907 75312907 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015072 exon23 c.T2348G p.V783G . . . VIPAR 63894 broad.mit.edu 36 14 76987346 76987346 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022067 exon5 c.T280C p.F94L . . . NRXN3 9369 broad.mit.edu 36 14 78504381 78504381 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004796 exon11 c.C1962A p.R654R . . . EML5 161436 broad.mit.edu 36 14 88200686 88200686 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183387 exon23 c.A3313G p.S1105G . . . TRIP11 9321 broad.mit.edu 36 14 91508904 91508904 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004239 exon20 c.C5629T p.P1877S . . . SLC24A4 123041 broad.mit.edu 36 14 91985272 91985272 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153646 exon10 c.A839G p.D280G . . . PPP4R4 57718 broad.mit.edu 36 14 93778409 93778409 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058237 exon11 c.T1177G p.F393V . . . PPP4R4 57718 broad.mit.edu 36 14 93803095 93803095 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058237 exon23 c.A2425G p.K809E . . . SERPINA4 5267 broad.mit.edu 36 14 94105520 94105520 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006215 exon5 c.T1119C p.A373A . . . SETD3 84193 broad.mit.edu 36 14 98935209 98935209 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032233 exon13 c.A1345G p.K449E . . . CDH24 64403 broad.mit.edu 36 14 22594154 22594154 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022478 exon3 c.450delT p.F150fs . . . HOMEZ 57594 broad.mit.edu 36 14 22815150 22815150 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020834 exon2 c.1127delT p.L376fs . . . PABPN1 8106 broad.mit.edu 36 14 22863319 22863319 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001199864 exon8 c.943delC p.P315fs . . . NIN 51199 broad.mit.edu 36 14 50294118 50294118 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182944 exon18 c.3380delT p.L1127fs . . . C15orf2 23742 broad.mit.edu 36 15 22472569 22472569 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018958 exon1 c.A462C p.Q154H . . . GABRB3 2562 broad.mit.edu 36 15 24417620 24417620 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021912 exon4 c.A395G p.H132R . . . GABRG3 2567 broad.mit.edu 36 15 25451588 25451588 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033223 exon10 c.A1370G p.N457S . . . HERC2 8924 broad.mit.edu 36 15 26035537 26035537 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004667 exon88 c.T13478G p.L4493R . . . HERC2 8924 broad.mit.edu 36 15 26152474 26152474 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004667 exon28 c.C4282T p.P1428S . . . HERC2 8924 broad.mit.edu 36 15 26157437 26157437 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004667 exon24 c.T3654C p.H1218H . . . TJP1 7082 broad.mit.edu 36 15 27788294 27788294 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175610 exon24 c.A4371G p.R1457R . . . CHST14 113189 broad.mit.edu 36 15 38551704 38551704 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130468 exon1 c.G1000A p.E334K . . . EHD4 30844 broad.mit.edu 36 15 39980288 39980288 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139265 exon6 c.C1473T p.A491A . . . TTBK2 146057 broad.mit.edu 36 15 40832713 40832713 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173500 exon14 c.G2023T p.A675S . . . TGM5 9333 broad.mit.edu 36 15 41339938 41339938 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004245 exon2 c.C142T p.R48W . . . HDC 3067 broad.mit.edu 36 15 48332257 48332257 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002112 exon8 c.G794A p.R265H . . . TMOD2 29767 broad.mit.edu 36 15 49877722 49877722 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014548 exon8 c.A769G p.T257A . . . MYO5A 4644 broad.mit.edu 36 15 50467343 50467343 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000259 exon14 c.A1727G p.Q576R . . . MNS1 55329 broad.mit.edu 36 15 54535916 54535916 + De_novo_Start_InFrame SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018365 exon3 c.C321T p.D107D . . . CGNL1 84952 broad.mit.edu 36 15 55596338 55596338 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032866 exon9 c.G2472A p.V824V . . . VPS13C 54832 broad.mit.edu 36 15 60114461 60114461 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017684 exon4 c.T270C p.V90V . . . PDCD7 10081 broad.mit.edu 36 15 63199142 63199142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005707 exon3 c.C1213T p.R405C . . . DENND4A 10260 broad.mit.edu 36 15 63751194 63751194 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144823 exon25 c.A4451G p.Y1484C . . . ITGA11 22801 broad.mit.edu 36 15 66404619 66404619 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004439 exon18 c.C2226T p.Y742Y . . . MYO9A 4649 broad.mit.edu 36 15 69978129 69978129 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006901 exon25 c.A3769G p.R1257G . . . PKM2 5315 broad.mit.edu 36 15 70286649 70286649 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002654 exon7 c.G860T p.S287I . . . NEO1 4756 broad.mit.edu 36 15 71205952 71205952 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172623 exon4 c.T866C p.L289P . . . CCDC33 80125 broad.mit.edu 36 15 72360093 72360093 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025055 exon9 c.G921A p.Q307Q . . . LMAN1L 79748 broad.mit.edu 36 15 72904961 72904961 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021819 exon14 c.C1543A p.L515M . . . ACSBG1 23205 broad.mit.edu 36 15 76259075 76259075 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199377 exon10 c.G1344A p.A448A . . . ADAMTSL3 57188 broad.mit.edu 36 15 82351135 82351135 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon12 c.G1262A p.R421H . . . AKAP13 11214 broad.mit.edu 36 15 84087795 84087795 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006738 exon36 c.G8139A p.S2713S . . . KIF7 374654 broad.mit.edu 36 15 87972800 87972800 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198525 exon19 c.C3886T p.R1296W . . . SV2B 9899 broad.mit.edu 36 15 89596231 89596231 + Silent SNP C T T rs61731608 unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014848 exon4 c.C630T p.I210I . . . ST8SIA2 8128 broad.mit.edu 36 15 90778608 90778608 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006011 exon3 c.A289G p.R97G . . . MCTP2 55784 broad.mit.edu 36 15 92743225 92743225 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159643 exon14 c.T1820C p.L607P . . . HERC2 8924 broad.mit.edu 36 15 26191645 26191646 + Frame_Shift_Del DEL CT - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 CT CT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004667 exon8 c.900_901del p.300_301del . . . C15orf55 256646 broad.mit.edu 36 15 32434563 32434563 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175741 exon6 c.1328delA p.E443fs . . . NOX5 79400 broad.mit.edu 36 15 67118280 67118280 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184779 exon9 c.1317delT p.P439fs . . . MAN2C1 4123 broad.mit.edu 36 15 73438005 73438005 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006715 exon20 c.2254delG p.V752fs . . . AKAP13 11214 broad.mit.edu 36 15 83923991 83923991 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006738 exon7 c.1688delA p.E563fs . . . IQGAP1 8826 broad.mit.edu 36 15 88811730 88811732 + In_Frame_Del DEL TAT - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 TAT TAT TAT - TAT TAT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003870 exon18 c.2080_2082del p.694_694del . . . MYH11 4629 broad.mit.edu 36 16 15726049 15726049 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon31 c.G4093A p.A1365T . . . ABCC6 368 broad.mit.edu 36 16 16151994 16151994 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171 exon30 c.G4345A p.A1449T . . . C16orf62 57020 broad.mit.edu 36 16 19601113 19601113 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020314 exon28 c.C2694A p.T898T . . . UQCRC2 7385 broad.mit.edu 36 16 21901991 21901991 + Nonstop_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003366 exon14 c.T1360C p.X454Q . . . VWA3A 146177 broad.mit.edu 36 16 22057272 22057272 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173615 exon22 c.C2230A p.L744I . . . COG7 91949 broad.mit.edu 36 16 23337569 23337569 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153603 exon8 c.G1090A p.D364N . . . GGA2 23062 broad.mit.edu 36 16 23401758 23401758 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015044 exon9 c.C867T p.D289D . . . TNRC6A 27327 broad.mit.edu 36 16 24712398 24712398 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014494 exon7 c.A3279C p.E1093D . . . ZKSCAN2 342357 broad.mit.edu 36 16 25158746 25158746 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012981 exon7 c.A2796C p.K932N . . . IL21R 50615 broad.mit.edu 36 16 27367838 27367838 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181079 exon10 c.G1416C p.K472N . . . SRRM2 23524 broad.mit.edu 36 16 2755679 2755679 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016333 exon11 c.C5149T p.R1717C . . . KIAA0556 23247 broad.mit.edu 36 16 27668666 27668666 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015202 exon16 c.G2884A p.A962T . . . CCDC101 112869 broad.mit.edu 36 16 28509471 28509471 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138414 exon8 c.C585T p.I195I . . . SEZ6L2 26470 broad.mit.edu 36 16 29795758 29795758 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114100 exon10 c.G1582A p.D528N . . . SEZ6L2 26470 broad.mit.edu 36 16 29796198 29796198 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114100 exon9 c.C1462T p.R488C . . . SETD1A 9739 broad.mit.edu 36 16 30883531 30883531 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014712 exon7 c.G967A p.A323T . . . ITGAM 3684 broad.mit.edu 36 16 31180597 31180597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000632 exon2 c.G112A p.V38M . . . ZNF267 10308 broad.mit.edu 36 16 31803400 31803400 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003414 exon2 c.G84A p.L28L . . . ZNF434 54925 broad.mit.edu 36 16 3374775 3374775 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017810 exon5 c.C283T p.R95C . . . ZNF434 54925 broad.mit.edu 36 16 3380090 3380090 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017810 exon4 c.A36T p.Q12H . . . CLUAP1 23059 broad.mit.edu 36 16 3526167 3526167 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024793 exon8 c.C639T p.D213D . . . CREBBP 1387 broad.mit.edu 36 16 3760936 3760936 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon14 c.A2516G p.Q839R . . . GPT2 84706 broad.mit.edu 36 16 45513738 45513738 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142466 exon9 c.G821A p.R274H . . . NETO2 81831 broad.mit.edu 36 16 45719896 45719896 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018092 exon4 c.C322T p.R108X . . . ABCC12 94160 broad.mit.edu 36 16 46735377 46735377 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033226 exon2 c.G220A p.V74I . . . ABCC11 85320 broad.mit.edu 36 16 46791803 46791803 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145186 exon15 c.T1967G p.L656R . . . ABCC11 85320 broad.mit.edu 36 16 46806695 46806695 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145186 exon8 c.G1013A p.R338H . . . PAPD5 64282 broad.mit.edu 36 16 48802793 48802793 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040284 exon3 c.A652G p.K218E . . . SALL1 6299 broad.mit.edu 36 16 49733151 49733151 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002968 exon2 c.C483T p.G161G . . . MT1M 4499 broad.mit.edu 36 16 55225177 55225177 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176870 exon3 c.C108T p.C36C . . . NLRC5 84166 broad.mit.edu 36 16 55625062 55625062 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032206 exon12 c.G2523A p.Q841Q . . . FAM192A 80011 broad.mit.edu 36 16 55745831 55745831 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024946 exon7 c.C637T p.P213S . . . RSPRY1 89970 broad.mit.edu 36 16 55822188 55822188 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133368 exon12 c.C1338T p.N446N . . . SLC9A5 6553 broad.mit.edu 36 16 65846434 65846434 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004594 exon3 c.T500C p.V167A . . . FAM65A 79567 broad.mit.edu 36 16 66133830 66133830 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193522 exon13 c.C1652A p.T551N . . . C16orf48 84080 broad.mit.edu 36 16 66256559 66256559 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032140 exon3 c.G294T p.K98N . . . GFOD2 81577 broad.mit.edu 36 16 66266861 66266861 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030819 exon3 c.G856T p.A286S . . . SNTB2 6645 broad.mit.edu 36 16 67891164 67891164 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006750 exon6 c.C1516T p.P506S . . . DDX19A 55308 broad.mit.edu 36 16 68958084 68958084 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018332 exon9 c.T839C p.V280A . . . HYDIN 54768 broad.mit.edu 36 16 69579463 69579463 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon27 c.A4056G p.G1352G . . . CALB2 794 broad.mit.edu 36 16 69975429 69975429 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007088 exon7 c.G533T p.R178L . . . PHLPP2 23035 broad.mit.edu 36 16 70240302 70240302 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015020 exon18 c.G3964T p.A1322S . . . CTRB2 440387 broad.mit.edu 36 16 73795626 73795626 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025200 exon7 c.G726A p.T242T . . . CHST5 23563 broad.mit.edu 36 16 74121257 74121257 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024533 exon3 c.C527T p.T176M . . . ADAT1 23536 broad.mit.edu 36 16 74191706 74191706 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012091 exon11 c.C1418T p.A473V . . . PKD1L2 114780 broad.mit.edu 36 16 79708630 79708630 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052892 exon39 c.G6619A p.A2207T . . . KIAA0182 23199 broad.mit.edu 36 16 84259395 84259395 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134473 exon13 c.A2967G p.P989P . . . GRIN2A 2903 broad.mit.edu 36 16 9765311 9765311 + Silent SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134408 exon13 c.T3591G p.G1197G . . . RPGRIP1L 23322 broad.mit.edu 36 16 52277900 52277901 + Frame_Shift_Del DEL TT - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 TT TT Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127897 exon6 c.721_722del p.241_241del . . . HTA 283902 broad.mit.edu 36 16 71684568 71684568 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . MYH1 4619 broad.mit.edu 36 17 10349259 10349259 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005963 exon21 c.C2381A p.A794D . . . MAP2K4 6416 broad.mit.edu 36 17 11957343 11957343 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003010 exon7 c.G754A p.G252R . . . ELAC2 60528 broad.mit.edu 36 17 12837804 12837804 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165962 exon22 c.C2058T p.S686S . . . COX10 1352 broad.mit.edu 36 17 14036081 14036081 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001303 exon6 c.C746T p.A249V . . . NCOR1 9611 broad.mit.edu 36 17 15908977 15908977 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190440 exon33 c.T5081A p.I1694N . . . CCDC144A 9720 broad.mit.edu 36 17 16553231 16553231 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014695 exon5 c.C1135A p.P379T . . . TOP3A 7156 broad.mit.edu 36 17 18121792 18121792 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004618 exon18 c.C2749T p.R917C . . . KIAA0100 9703 broad.mit.edu 36 17 23971062 23971062 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014680 exon30 c.G5463A p.V1821V . . . MYO18A 399687 broad.mit.edu 36 17 24466833 24466833 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203318 exon12 c.G2202T p.E734D . . . MYO18A 399687 broad.mit.edu 36 17 24517457 24517457 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203318 exon2 c.G628A p.V210M . . . CORO6 84940 broad.mit.edu 36 17 24967925 24967925 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032854 exon7 c.T925C p.F309L . . . SSH2 85464 broad.mit.edu 36 17 25054200 25054200 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033389 exon3 c.C114T p.S38S . . . CCDC55 84081 broad.mit.edu 36 17 25536801 25536801 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032141 exon7 c.G1660C p.E554Q . . . ATAD5 79915 broad.mit.edu 36 17 26185639 26185639 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024857 exon2 c.C414T p.S138S . . . ATAD5 79915 broad.mit.edu 36 17 26206429 26206429 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024857 exon7 c.A2593G p.T865A . . . MRM1 79922 broad.mit.edu 36 17 32032751 32032751 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024864 exon1 c.G399T p.E133D . . . TRPV1 7442 broad.mit.edu 36 17 3423842 3423842 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018727 exon13 c.C1937T p.A646V . . . PLXDC1 57125 broad.mit.edu 36 17 34515715 34515715 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020405 exon7 c.G729A p.P243P . . . AOC3 8639 broad.mit.edu 36 17 38257691 38257691 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003734 exon1 c.C805T p.R269C . . . ZZEF1 23140 broad.mit.edu 36 17 3955818 3955818 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015113 exon7 c.T1312A p.S438T . . . SLC4A1 6521 broad.mit.edu 36 17 39691491 39691491 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000342 exon10 c.T903C p.A301A . . . FMNL1 752 broad.mit.edu 36 17 40671730 40671730 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005892 exon10 c.A911G p.H304R . . . KIAA1267 284058 broad.mit.edu 36 17 41466365 41466365 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015443 exon13 c.C2765T p.A922V . . . MYBBP1A 10514 broad.mit.edu 36 17 4395335 4395335 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014520 exon16 c.G2128A p.D710N . . . COL1A1 1277 broad.mit.edu 36 17 45618203 45618203 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000088 exon50 c.G4183T p.E1395X . . . COL1A1 1277 broad.mit.edu 36 17 45618756 45618756 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000088 exon49 c.A3926G p.Q1309R . . . COL1A1 1277 broad.mit.edu 36 17 45632266 45632266 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000088 exon2 c.G145C p.D49H . . . VPS53 55275 broad.mit.edu 36 17 478108 478108 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128159 exon9 c.G801A p.E267E . . . SCPEP1 59342 broad.mit.edu 36 17 52417741 52417741 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021626 exon3 c.G229A p.G77S . . . DDX5 1655 broad.mit.edu 36 17 59927212 59927212 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004396 exon12 c.T1358C p.V453A . . . CACNG1 786 broad.mit.edu 36 17 62471431 62471431 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000727 exon1 c.G193A p.D65N . . . ABCA8 10351 broad.mit.edu 36 17 64411109 64411109 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007168 exon18 c.G2405A p.R802Q . . . SLC39A11 201266 broad.mit.edu 36 17 68539397 68539397 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159770 exon4 c.G199A p.A67T . . . USH1G 124590 broad.mit.edu 36 17 70428182 70428182 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173477 exon2 c.G344A p.R115H . . . RECQL5 9400 broad.mit.edu 36 17 71135106 71135106 + Silent SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004259 exon20 c.C2967A p.P989P . . . YBX2 51087 broad.mit.edu 36 17 7134340 7134340 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015982 exon5 c.G698A p.R233Q . . . TRIM47 91107 broad.mit.edu 36 17 71382552 71382552 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033452 exon6 c.C1524T p.Y508Y . . . POLR2A 5430 broad.mit.edu 36 17 7340825 7340825 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000937 exon5 c.C556T p.R186W . . . TNRC6C 57690 broad.mit.edu 36 17 73594533 73594533 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018996 exon14 c.C3566T p.A1189V . . . TMC8 147138 broad.mit.edu 36 17 73642178 73642178 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152468 exon8 c.C925A p.L309M . . . SLC26A11 284129 broad.mit.edu 36 17 75814236 75814236 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166349 exon5 c.G519A p.L173L . . . RPTOR 57521 broad.mit.edu 36 17 76472226 76472226 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020761 exon16 c.C1701T p.N567N . . . ALOXE3 59344 broad.mit.edu 36 17 7952592 7952592 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001165960 exon13 c.G1999A p.A667T . . . PFAS 5198 broad.mit.edu 36 17 8113249 8113249 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012393 exon28 c.C3959T p.S1320F . . . PIK3R5 23533 broad.mit.edu 36 17 8724753 8724753 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014308 exon19 c.G2571A p.P857P . . . DHRS7C 201140 broad.mit.edu 36 17 9635305 9635305 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105571 exon1 c.A22G p.M8V . . . GAS7 8522 broad.mit.edu 36 17 9863859 9863859 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201432 exon2 c.G84A p.S28S . . . JUP 3728 broad.mit.edu 36 17 37165585 37165585 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021991 exon14 c.2175delC p.P725fs . . . GEMIN4 50628 broad.mit.edu 36 17 597732 597734 + In_Frame_Del DEL CCA - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 CCA CCA CCA - CCA CCA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015721 exon2 c.299_301del p.100_101del . . . LRRC37A3 374819 broad.mit.edu 36 17 60286814 60286814 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199340 exon11 c.3912delA p.K1304fs . . . DVL2 1856 broad.mit.edu 36 17 7070318 7070318 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004422 exon15 c.1801delG p.A601fs . . . TMEM105 284186 broad.mit.edu 36 17 76902298 76902298 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178520 exon3 c.138delC p.P46fs . . . LRRC30 339291 broad.mit.edu 36 18 7221574 7221575 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105581 exon1 c.438_439insT p.S146fs . . . CEP192 55125 broad.mit.edu 36 18 13046463 13046463 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032142 exon19 c.G3874T p.G1292X . . . MC2R 4158 broad.mit.edu 36 18 13875243 13875243 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000529 exon2 c.T275G p.L92R . . . AQP4 361 broad.mit.edu 36 18 22696283 22696283 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001650 exon2 c.C308T p.A103V . . . DSG1 1828 broad.mit.edu 36 18 27167595 27167595 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001942 exon7 c.G730T p.G244C . . . SMCHD1 23347 broad.mit.edu 36 18 2765769 2765769 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015295 exon42 c.C5213T p.A1738V . . . FHOD3 80206 broad.mit.edu 36 18 32410483 32410483 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025135 exon6 c.C583A p.L195M . . . FHOD3 80206 broad.mit.edu 36 18 32459577 32459577 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025135 exon10 c.C1063T p.R355W . . . ST8SIA5 29906 broad.mit.edu 36 18 42522860 42522860 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013305 exon4 c.G332A p.C111Y . . . ZBTB7C 201501 broad.mit.edu 36 18 43820603 43820603 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039360 exon2 c.G874A p.E292K . . . CCDC11 220136 broad.mit.edu 36 18 46031977 46031977 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145020 exon4 c.G649A p.A217T . . . MAPK4 5596 broad.mit.edu 36 18 46444344 46444344 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002747 exon2 c.C18T p.D6D . . . ZNF532 55205 broad.mit.edu 36 18 54752669 54752669 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018181 exon5 c.C2371A p.L791M . . . ZCCHC2 54877 broad.mit.edu 36 18 58368565 58368565 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017742 exon5 c.C1205G p.P402R . . . ZNF407 55628 broad.mit.edu 36 18 70904173 70904173 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017757 exon8 c.G5508A p.A1836A . . . CEP76 79959 broad.mit.edu 36 18 12689829 12689829 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024899 exon3 c.295delA p.T99fs . . . KIAA1632 57724 broad.mit.edu 36 18 41710227 41710228 + Frame_Shift_Del DEL AC - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 AC AC AC - AC AC Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020964 exon35 c.6020_6021del p.2007_2007del . . . PIGN 23556 broad.mit.edu 36 18 57908720 57908721 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176787 exon24 c.2251_2252del p.751_751del . . . TMPRSS9 360200 broad.mit.edu 36 19 2369094 2369095 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182973 exon12 c.2010_2011insA p.M670fs . . . MIA 8190 broad.mit.edu 36 19 45973371 45973372 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006533 exon1 c.84_85insA p.P28fs . . . ABCA7 10347 broad.mit.edu 36 19 1013246 1013246 + Silent SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019112 exon42 c.G5646T p.L1882L . . . ICAM1 3383 broad.mit.edu 36 19 10246645 10246645 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000201 exon2 c.T272C p.M91T . . . ICAM4 3386 broad.mit.edu 36 19 10259784 10259784 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039132 exon3 c.G743T p.G248V . . . ILF3 3609 broad.mit.edu 36 19 10660329 10660329 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012218 exon19 c.C2526T p.G842G . . . ELAVL3 1995 broad.mit.edu 36 19 11429982 11429982 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001420 exon5 c.G607A p.A203T . . . ECSIT 51295 broad.mit.edu 36 19 11485780 11485780 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142464 exon3 c.G353A p.R118Q . . . ZNF44 51710 broad.mit.edu 36 19 12244358 12244358 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016264 exon4 c.G1712A p.R571H . . . ZNF791 163049 broad.mit.edu 36 19 12600566 12600566 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153358 exon4 c.G1223C p.G408A . . . MAN2B1 4125 broad.mit.edu 36 19 12633184 12633184 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000528 exon7 c.T916C p.Y306H . . . ILVBL 10994 broad.mit.edu 36 19 15088117 15088117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006844 exon12 c.G1317A p.M439I . . . AKAP8 10270 broad.mit.edu 36 19 15333932 15333933 + Missense_Mutation DNP CC GG GG novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 CC CC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005858 exon10 c.1290_1291CC . . . . MED26 9441 broad.mit.edu 36 19 16548291 16548291 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004831 exon3 c.C1350T p.H450H . . . CPAMD8 27151 broad.mit.edu 36 19 16923785 16923785 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015692 exon20 c.C2643T p.C881C . . . GDF15 9518 broad.mit.edu 36 19 18358004 18358004 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004864 exon1 c.C5A p.P2H . . . ZNF101 94039 broad.mit.edu 36 19 19651016 19651016 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033204 exon4 c.G218A p.R73H . . . SLC39A3 29985 broad.mit.edu 36 19 2683911 2683911 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144564 exon3 c.G783A p.A261A . . . ZNF536 9745 broad.mit.edu 36 19 35628279 35628279 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014717 exon2 c.G1970A p.R657H . . . MAG 4099 broad.mit.edu 36 19 40492648 40492648 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199216 exon8 c.C1188T p.C396C . . . DMKN 93099 broad.mit.edu 36 19 40682712 40682712 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033317 exon13 c.G1347T p.K449N . . . ATP4A 495 broad.mit.edu 36 19 40743141 40743141 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000704 exon6 c.C751T p.R251C . . . HAUS5 23354 broad.mit.edu 36 19 40802991 40802991 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015302 exon17 c.C1573A p.L525M . . . ANKRD24 170961 broad.mit.edu 36 19 4167803 4167803 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133475 exon18 c.C1646T p.S549L . . . ZNF567 163081 broad.mit.edu 36 19 41902203 41902203 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152603 exon4 c.C644T p.A215V . . . ZNF573 126231 broad.mit.edu 36 19 42921619 42921619 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172691 exon5 c.T1606C p.Y536H . . . RASGRP4 115727 broad.mit.edu 36 19 43595179 43595179 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146206 exon10 c.T1086C p.P362P . . . LGALS7B 653499 broad.mit.edu 36 19 43973246 43973246 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042507 exon3 c.C173T p.S58L . . . TIMM50 92609 broad.mit.edu 36 19 44670631 44670631 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001563 exon9 c.G1096A p.A366T . . . CYP2A13 1553 broad.mit.edu 36 19 46286281 46286281 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000766 exon1 c.C65A p.S22X . . . ZNF526 116115 broad.mit.edu 36 19 47421221 47421221 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133444 exon3 c.G826A p.G276R . . . CIC 23152 broad.mit.edu 36 19 47483895 47483895 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015125 exon6 c.G859T p.G287W . . . LIPE 3991 broad.mit.edu 36 19 47604299 47604299 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005357 exon3 c.C1435T p.R479W . . . ZNF284 342909 broad.mit.edu 36 19 49282176 49282176 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037813 exon5 c.G705C p.Q235H . . . CEACAM20 125931 broad.mit.edu 36 19 49716592 49716592 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102597 exon5 c.C786T p.S262S . . . CEACAM19 56971 broad.mit.edu 36 19 49868062 49868062 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127893 exon2 c.A410G p.E137G . . . OPA3 80207 broad.mit.edu 36 19 50748725 50748725 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025136 exon2 c.G427C p.A143P . . . PPP5C 5536 broad.mit.edu 36 19 51548934 51548934 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006247 exon2 c.G211A p.A71T . . . PTPRS 5802 broad.mit.edu 36 19 5172225 5172225 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002850 exon20 c.A3241G p.T1081A . . . ALDH16A1 126133 broad.mit.edu 36 19 54659519 54659519 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153329 exon11 c.C1365T p.H455H . . . TSKS 60385 broad.mit.edu 36 19 54957094 54957094 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021733 exon2 c.C378A p.D126E . . . AP2A1 160 broad.mit.edu 36 19 54995069 54995069 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130787 exon11 c.C1305T p.Y435Y . . . SHANK1 50944 broad.mit.edu 36 19 55881349 55881349 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016148 exon20 c.C2534A p.A845E . . . KLK1 3816 broad.mit.edu 36 19 56014298 56014298 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002257 exon5 c.G753T p.V251V . . . C19orf75 284369 broad.mit.edu 36 19 56460682 56460682 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173635 exon3 c.G271A p.G91R . . . CEACAM18 729767 broad.mit.edu 36 19 56675551 56675551 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080405 exon3 c.G388A p.A130T . . . ZNF610 162963 broad.mit.edu 36 19 57548750 57548750 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173530 exon4 c.C67T p.R23C . . . ZNF528 84436 broad.mit.edu 36 19 57610369 57610369 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032423 exon7 c.T452A p.I151N . . . FUT3 2525 broad.mit.edu 36 19 5795264 5795264 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097640 exon3 c.C587T p.A196V . . . NLRP12 91662 broad.mit.edu 36 19 59006072 59006072 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144687 exon3 c.C653T p.A218V . . . PRKCG 5582 broad.mit.edu 36 19 59101780 59101780 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002739 exon18 c.G1913A p.R638H . . . NLRP2 55655 broad.mit.edu 36 19 60186334 60186334 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174083 exon7 c.G1387A p.G463R . . . ZNF667 63934 broad.mit.edu 36 19 61645632 61645632 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022103 exon5 c.A544G p.R182G . . . ZNF471 57573 broad.mit.edu 36 19 61728789 61728789 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020813 exon5 c.C1541A p.P514H . . . ZNF835 90485 broad.mit.edu 36 19 61868088 61868088 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005850 exon2 c.C357T p.S119S . . . ZIM2 23619 broad.mit.edu 36 19 61977880 61977880 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146326 exon12 c.C1572T p.C524C . . . ZNF543 125919 broad.mit.edu 36 19 62526902 62526902 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213598 exon2 c.A59G p.Q20R . . . ZNF749 388567 broad.mit.edu 36 19 62648424 62648424 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001023561 exon3 c.G2096C p.S699T . . . ZNF417 147687 broad.mit.edu 36 19 63111754 63111754 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152475 exon3 c.T1704C p.S568S . . . ZNF418 147686 broad.mit.edu 36 19 63129782 63129782 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133460 exon4 c.C1579T p.R527X . . . INSR 3643 broad.mit.edu 36 19 7117276 7117276 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000208 exon8 c.A1750G p.K584E . . . INSR 3643 broad.mit.edu 36 19 7135419 7135419 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000208 exon3 c.G882A p.K294K . . . INSR 3643 broad.mit.edu 36 19 7218447 7218447 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000208 exon2 c.G561A p.P187P . . . MCOLN1 57192 broad.mit.edu 36 19 7499557 7499557 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020533 exon8 c.C952T p.R318C . . . MYO1F 4542 broad.mit.edu 36 19 8525538 8525538 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012335 exon3 c.G231A p.A77A . . . MUC16 94025 broad.mit.edu 36 19 8920724 8920724 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.T27722A p.V9241D . . . MUC16 94025 broad.mit.edu 36 19 8930072 8930072 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C18374T p.A6125V . . . MUC16 94025 broad.mit.edu 36 19 8952073 8952073 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon1 c.T742A p.S248T . . . ZNF317 57693 broad.mit.edu 36 19 9131952 9131952 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190791 exon6 c.C535G p.Q179E . . . ZNF317 57693 broad.mit.edu 36 19 9132885 9132885 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190791 exon6 c.C1468T p.R490X . . . DNMT1 1786 broad.mit.edu 36 19 10138348 10138349 + Frame_Shift_Del DEL TC - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 TC TC TC - TC TC Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130823 exon11 c.816_817del p.272_273del . . . RBM42 79171 broad.mit.edu 36 19 40815684 40815684 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024321 exon5 c.449delC p.A150fs . . . ADCK4 79934 broad.mit.edu 36 19 45912358 45912358 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024876 exon2 c.20delG p.G7fs . . . CIC 23152 broad.mit.edu 36 19 47486309 47486309 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015125 exon10 c.1549delC p.P517fs . . . SIX5 147912 broad.mit.edu 36 19 50960748 50960748 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175875 exon3 c.2071delC p.H691fs . . . PNPLA6 10908 broad.mit.edu 36 19 7529830 7529830 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166111 exon30 c.3522delG p.L1174fs . . . DENND4B 9909 broad.mit.edu 36 1 152181097 152181098 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014856 exon6 c.927_928insG p.G309fs . . . LRRIQ3 127255 broad.mit.edu 36 1 74394086 74394087 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105659 exon4 c.626_627insA p.I209fs . . . ARHGEF11 9826 broad.mit.edu 36 1 155183433 155183434 + Splice_Site INS - G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . KIAA1324 57535 broad.mit.edu 36 1 109544082 109544082 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020775 exon19 c.C2585T p.A862V . . . ATXN7L2 127002 broad.mit.edu 36 1 109834470 109834470 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153340 exon9 c.C1291T p.R431W . . . KCNA3 3738 broad.mit.edu 36 1 111018056 111018056 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002232 exon1 c.C899T p.T300M . . . MOV10 4343 broad.mit.edu 36 1 113038944 113038944 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020963 exon10 c.G1523T p.R508M . . . SLC16A1 6566 broad.mit.edu 36 1 113261986 113261986 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166496 exon4 c.T565G p.C189G . . . LRIG2 9860 broad.mit.edu 36 1 113468234 113468234 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014813 exon18 c.T3186C p.S1062S . . . HIPK1 204851 broad.mit.edu 36 1 114298849 114298849 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198269 exon3 c.C132A p.A44A . . . SYCP1 6847 broad.mit.edu 36 1 115230405 115230405 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003176 exon14 c.A1142G p.E381G . . . WDR3 10885 broad.mit.edu 36 1 118284984 118284984 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006784 exon7 c.G687A p.P229P . . . SPAG17 200162 broad.mit.edu 36 1 118425363 118425363 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206996 exon15 c.A2093C p.D698A . . . VPS13D 55187 broad.mit.edu 36 1 12287159 12287159 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018156 exon26 c.C6226T p.P2076S . . . VPS13D 55187 broad.mit.edu 36 1 12352185 12352185 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018156 exon53 c.A10574G p.D3525G . . . AADACL4 343066 broad.mit.edu 36 1 12648880 12648880 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013630 exon4 c.G771A p.L257L . . . HNRNPCL1 343069 broad.mit.edu 36 1 12830625 12830625 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013631 exon2 c.G105A p.A35A . . . ITGA10 8515 broad.mit.edu 36 1 144244130 144244130 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003637 exon10 c.C1092T p.N364N . . . GPR89A 653519 broad.mit.edu 36 1 144482998 144482998 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097613 exon12 c.A924G p.Q308Q . . . SETDB1 9869 broad.mit.edu 36 1 149188272 149188272 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145415 exon11 c.G1318A p.G440S . . . GABPB2 126626 broad.mit.edu 36 1 149357121 149357121 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144618 exon9 c.A1112G p.Y371C . . . CGN 57530 broad.mit.edu 36 1 149759723 149759723 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020770 exon5 c.G1072A p.V358M . . . TCHHL1 126637 broad.mit.edu 36 1 150325128 150325128 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008536 exon3 c.A1654C p.S552R . . . TCHH 7062 broad.mit.edu 36 1 150348312 150348312 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007113 exon2 c.C4005T p.D1335D . . . CRNN 49860 broad.mit.edu 36 1 150649890 150649890 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016190 exon3 c.G292A p.G98S . . . SPRR2A 6700 broad.mit.edu 36 1 151295782 151295782 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005988 exon2 c.C54T p.C18C . . . S100A2 6273 broad.mit.edu 36 1 151802899 151802899 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005978 exon2 c.A76C p.K26Q . . . PBXIP1 57326 broad.mit.edu 36 1 153190958 153190958 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020524 exon3 c.C115T p.Q39X . . . ASH1L 55870 broad.mit.edu 36 1 153579764 153579764 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018489 exon24 c.C8258T p.T2753I . . . SLC25A44 9673 broad.mit.edu 36 1 154436356 154436356 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014655 exon2 c.C94A p.R32S . . . RHBG 57127 broad.mit.edu 36 1 154620954 154620954 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020407 exon9 c.A1247G p.K416R . . . C1orf92 149499 broad.mit.edu 36 1 155165708 155165708 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144702 exon10 c.C1009T p.R337X . . . FCRL3 115352 broad.mit.edu 36 1 155926935 155926935 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052939 exon9 c.G1424A p.R475H . . . FCRL3 115352 broad.mit.edu 36 1 155931982 155931982 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052939 exon8 c.G1172T p.R391M . . . OR10X1 128367 broad.mit.edu 36 1 156816077 156816077 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004477 exon1 c.T237C p.L79L . . . ITLN2 142683 broad.mit.edu 36 1 159190862 159190862 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080878 exon2 c.G18T p.R6S . . . PVRL4 81607 broad.mit.edu 36 1 159316201 159316201 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030916 exon2 c.T242G p.L81R . . . USP21 27005 broad.mit.edu 36 1 159400591 159400591 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012475 exon9 c.G1232T p.G411V . . . C1orf89 79363 broad.mit.edu 36 1 16431359 16431359 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030907 exon5 c.C548T p.T183M . . . BRP44 25874 broad.mit.edu 36 1 166156436 166156436 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143674 exon4 c.G208A p.A70T . . . SLC19A2 10560 broad.mit.edu 36 1 167705955 167705955 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006996 exon3 c.T901C p.W301R . . . ATP13A2 23400 broad.mit.edu 36 1 17190896 17190896 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022089 exon20 c.T2171C p.M724T . . . DARS2 55157 broad.mit.edu 36 1 172089640 172089640 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018122 exon15 c.C1648T p.R550C . . . RABGAP1L 9910 broad.mit.edu 36 1 172511643 172511643 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014857 exon9 c.T1103C p.M368T . . . GPR52 9293 broad.mit.edu 36 1 172683943 172683943 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005684 exon1 c.G71A p.R24H . . . GPR52 9293 broad.mit.edu 36 1 172684890 172684890 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005684 exon1 c.A1018G p.M340V . . . FAM20B 9917 broad.mit.edu 36 1 177279732 177279732 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014864 exon2 c.C127T p.R43X . . . TOR3A 64222 broad.mit.edu 36 1 177321569 177321569 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022371 exon3 c.G557A p.R186Q . . . ABL2 27 broad.mit.edu 36 1 177344169 177344169 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168239 exon12 c.C2439T p.D813D . . . CACNA1E 777 broad.mit.edu 36 1 180026211 180026211 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon44 c.C5794T p.R1932W . . . NMNAT2 23057 broad.mit.edu 36 1 181519768 181519768 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015039 exon7 c.C559T p.R187W . . . PRG4 10216 broad.mit.edu 36 1 184532682 184532682 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127709 exon2 c.G52A p.V18M . . . TPR 7175 broad.mit.edu 36 1 184598720 184598720 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon6 c.C568A p.L190I . . . KLHDC7A 127707 broad.mit.edu 36 1 18680896 18680896 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152375 exon1 c.G834A p.A278A . . . FAM5C 339479 broad.mit.edu 36 1 188500791 188500791 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199051 exon4 c.A445T p.I149F . . . UBR4 23352 broad.mit.edu 36 1 19280609 19280609 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020765 exon103 c.G15054A p.L5018L . . . CRB1 23418 broad.mit.edu 36 1 195657276 195657276 + Silent SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201253 exon6 c.A1695T p.G565G . . . NR5A2 2494 broad.mit.edu 36 1 198356634 198356634 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_205860 exon7 c.G1306T p.A436S . . . KIF14 9928 broad.mit.edu 36 1 198790342 198790342 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014875 exon29 c.C4444T p.Q1482X . . . SYT2 127833 broad.mit.edu 36 1 200832694 200832694 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177402 exon9 c.C1074T p.T358T . . . ATP2B4 493 broad.mit.edu 36 1 201963187 201963187 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001396 exon20 c.G3174T p.K1058N . . . PLEKHA6 22874 broad.mit.edu 36 1 202484975 202484975 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014935 exon11 c.G1634T p.R545M . . . TMCC2 9911 broad.mit.edu 36 1 203507774 203507774 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014858 exon5 c.C2029T p.R677C . . . MFSD4 148808 broad.mit.edu 36 1 203820706 203820706 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181644 exon5 c.G939A p.T313T . . . SLC45A3 85414 broad.mit.edu 36 1 203897794 203897794 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033102 exon4 c.C1042T p.R348X . . . SLC26A9 115019 broad.mit.edu 36 1 204168780 204168780 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134325 exon3 c.T181C p.W61R . . . PIGR 5284 broad.mit.edu 36 1 205173102 205173102 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002644 exon7 c.G1738A p.A580T . . . CR1 1378 broad.mit.edu 36 1 205763920 205763920 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000651 exon5 c.C829T p.R277C . . . CD34 947 broad.mit.edu 36 1 206139913 206139913 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001773 exon2 c.G138T p.Q46H . . . EIF4G3 8672 broad.mit.edu 36 1 21052684 21052684 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003760 exon22 c.G3339A p.T1113T . . . PTPN14 5784 broad.mit.edu 36 1 212623804 212623804 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005401 exon13 c.G2017T p.E673X . . . USH2A 7399 broad.mit.edu 36 1 214439940 214439940 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206933 exon17 c.A3463C p.S1155R . . . EPRS 2058 broad.mit.edu 36 1 218260077 218260077 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004446 exon10 c.A1225G p.I409V . . . IARS2 55699 broad.mit.edu 36 1 218342733 218342733 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018060 exon7 c.C941T p.P314L . . . USP48 84196 broad.mit.edu 36 1 21927728 21927728 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032730 exon11 c.C1372T p.R458C . . . MIA3 375056 broad.mit.edu 36 1 220905286 220905286 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198551 exon28 c.G5426A p.R1809H . . . URB2 9816 broad.mit.edu 36 1 227839070 227839070 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014777 exon4 c.C2087T p.A696V . . . C1orf57 84284 broad.mit.edu 36 1 231158801 231158801 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032324 exon3 c.G283A p.V95I . . . NID1 4811 broad.mit.edu 36 1 234255833 234255833 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002508 exon8 c.T1970C p.I657T . . . RYR2 6262 broad.mit.edu 36 1 235684345 235684345 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035 exon15 c.G1324A p.A442T . . . RGS7 6000 broad.mit.edu 36 1 239166621 239166621 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002924 exon5 c.C235T p.L79F . . . SMYD3 64754 broad.mit.edu 36 1 243979512 243979512 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022743 exon12 c.C1086T p.C362C . . . AHCTF1 25909 broad.mit.edu 36 1 245146252 245146252 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015446 exon3 c.C217T p.R73X . . . ZNF695 57116 broad.mit.edu 36 1 245218060 245218060 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020394 exon4 c.A380G p.D127G . . . OR2C3 81472 broad.mit.edu 36 1 245761778 245761778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198074 exon2 c.G659A p.G220D . . . OR2M2 391194 broad.mit.edu 36 1 246410581 246410581 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004688 exon1 c.C671A p.A224D . . . CNKSR1 10256 broad.mit.edu 36 1 26379952 26379952 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006314 exon3 c.G370A p.A124T . . . AHDC1 27245 broad.mit.edu 36 1 27747958 27747958 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029882 exon6 c.T3256G p.S1086A . . . DNAJC8 22826 broad.mit.edu 36 1 28407502 28407502 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014280 exon6 c.C409T p.R137X . . . CSMD2 114784 broad.mit.edu 36 1 33896250 33896250 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052896 exon27 c.G4210A p.G1404S . . . TPRG1L 127262 broad.mit.edu 36 1 3534008 3534008 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182752 exon4 c.C555T p.N185N . . . EIF2C1 26523 broad.mit.edu 36 1 36130797 36130797 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012199 exon3 c.C262T p.R88C . . . MAP7D1 55700 broad.mit.edu 36 1 36409487 36409487 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018067 exon2 c.C375T p.S125S . . . EPHA10 284656 broad.mit.edu 36 1 37969763 37969763 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099439 exon7 c.C1570T p.R524C . . . MACF1 23499 broad.mit.edu 36 1 39573932 39573932 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033044 exon1 c.G4405A p.A1469T . . . RIMS3 9783 broad.mit.edu 36 1 40874292 40874292 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014747 exon4 c.G242A p.S81N . . . MED8 112950 broad.mit.edu 36 1 43625190 43625190 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052877 exon4 c.C337T p.P113S . . . MAST2 23139 broad.mit.edu 36 1 46273300 46273300 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015112 exon29 c.C4372T p.L1458L . . . POMGNT1 55624 broad.mit.edu 36 1 46431186 46431186 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017739 exon14 c.A1184G p.D395G . . . ORC1 4998 broad.mit.edu 36 1 52626754 52626754 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190818 exon8 c.G1331A p.R444Q . . . C8B 732 broad.mit.edu 36 1 57184156 57184156 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000066 exon7 c.A1031G p.Y344C . . . CACHD1 57685 broad.mit.edu 36 1 64917901 64917901 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020925 exon24 c.G3127A p.A1043T . . . RAVER2 55225 broad.mit.edu 36 1 65015907 65015907 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018211 exon3 c.A330G p.L110L . . . TAS1R1 80835 broad.mit.edu 36 1 6559609 6559609 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177540 exon4 c.G724A p.V242M . . . DNAJC11 55735 broad.mit.edu 36 1 6628513 6628513 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018198 exon8 c.C817T p.R273X . . . C1orf173 127254 broad.mit.edu 36 1 74859019 74859019 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002912 exon8 c.A987C p.K329N . . . SLC44A5 204962 broad.mit.edu 36 1 75454063 75454063 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152697 exon19 c.T1692C p.N564N . . . USP33 23032 broad.mit.edu 36 1 77960401 77960401 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015017 exon14 c.G1551T p.K517N . . . DNAJB4 11080 broad.mit.edu 36 1 78251398 78251398 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007034 exon2 c.C287T p.A96V . . . TGFBR3 7049 broad.mit.edu 36 1 91957575 91957575 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195683 exon10 c.T1445G p.L482W . . . ABCA4 24 broad.mit.edu 36 1 94239146 94239146 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon46 c.G6386T p.S2129I . . . ABCA4 24 broad.mit.edu 36 1 94269925 94269925 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon27 c.G4125A p.A1375A . . . ABCA4 24 broad.mit.edu 36 1 94289784 94289784 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000350 exon17 c.C2646T p.G882G . . . DPYD 1806 broad.mit.edu 36 1 97473044 97473044 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000110 exon19 c.T2394C p.S798S . . . LPPR4 9890 broad.mit.edu 36 1 99534967 99534968 + Missense_Mutation DNP GC TG TG novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 GC GC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014839 exon3 c.494_495TG . . . . EPS8L3 79574 broad.mit.edu 36 1 110102103 110102103 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139053 exon9 c.821delA p.N274fs . . . VTCN1 79679 broad.mit.edu 36 1 117491854 117491857 + Frame_Shift_Del DEL AAAG - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 AAAG AAAG AAAG - AAAG AAAG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024626 exon5 c.795_798del p.265_266del . . . MFN2 9927 broad.mit.edu 36 1 11989252 11989254 + In_Frame_Del DEL AGG - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 AGG AGG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001127660 exon15 c.1787_1789del p.596_597del . . . PRDM2 7799 broad.mit.edu 36 1 13981336 13981336 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001007257 exon3 c.3856delA p.K1286fs . . . CA14 23632 broad.mit.edu 36 1 148501602 148501603 + Frame_Shift_Del DEL GA - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 GA GA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012113 exon5 c.454_455del p.152_152del . . . ATP8B2 57198 broad.mit.edu 36 1 152566925 152566925 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020452 exon1 c.26delT p.L9fs . . . FCRL5 83416 broad.mit.edu 36 1 155752030 155752030 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195388 exon17 c.2983delG p.E995fs . . . EPHA2 1969 broad.mit.edu 36 1 16347564 16347564 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004431 exon3 c.719delG p.G240fs . . . NFASC 23114 broad.mit.edu 36 1 203190656 203190656 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160331 exon4 c.471delC p.N157fs . . . TRIM11 81559 broad.mit.edu 36 1 226649499 226649499 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145214 exon6 c.937delG p.D313fs . . . KIAA1804 84451 broad.mit.edu 36 1 231581411 231581412 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032435 exon9 c.2036_2037del p.679_679del . . . ZNF593 51042 broad.mit.edu 36 1 26369726 26369726 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015871 exon3 c.337delC p.P113fs . . . TIE1 7075 broad.mit.edu 36 1 43545497 43545497 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005424 exon5 c.738delC p.C246fs . . . FPGT 8790 broad.mit.edu 36 1 74443360 74443362 + In_Frame_Del DEL TGT - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 TGT TGT TGT - TGT TGT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003838 exon4 c.1041_1043del p.347_348del . . . GBP2 2634 broad.mit.edu 36 1 89350849 89350851 + In_Frame_Del DEL TCT - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 TCT TCT TCT - TCT TCT Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004120 exon8 c.1254_1256del p.418_419del . . . SPATA1 64173 broad.mit.edu 36 1 84771238 84771238 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . SPATA1 64173 broad.mit.edu 36 1 84791360 84791360 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . SEL1L2 80343 broad.mit.edu 36 20 13794103 13794103 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025229 exon16 c.T1462G p.F488V . . . KIF16B 55614 broad.mit.edu 36 20 16308665 16308665 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024704 exon19 c.G1982A p.R661H . . . SEC23B 10483 broad.mit.edu 36 20 18479786 18479786 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032986 exon17 c.T1959C p.D653D . . . RIN2 54453 broad.mit.edu 36 20 19920915 19920915 + Silent SNP C G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018993 exon9 c.C2172G p.L724L . . . TGM3 7053 broad.mit.edu 36 20 2260650 2260650 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003245 exon10 c.T1336G p.S446A . . . GZF1 64412 broad.mit.edu 36 20 23293740 23293740 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022482 exon1 c.T720C p.Y240Y . . . C20orf186 149954 broad.mit.edu 36 20 31135035 31135035 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182519 exon3 c.G371T p.R124L . . . AHCY 191 broad.mit.edu 36 20 32342242 32342242 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000687 exon6 c.T722C p.I241T . . . NCOA6 23054 broad.mit.edu 36 20 32766818 32766818 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014071 exon15 c.C6161T p.A2054V . . . NCOA6 23054 broad.mit.edu 36 20 32778865 32778865 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014071 exon14 c.C6007T p.P2003S . . . CEP250 11190 broad.mit.edu 36 20 33518591 33518591 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007186 exon9 c.G648A p.L216L . . . PPP1R16B 26051 broad.mit.edu 36 20 36980408 36980408 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172735 exon10 c.C1263T p.A421A . . . CDC25B 994 broad.mit.edu 36 20 3730677 3730677 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004358 exon10 c.A986G p.D329G . . . CHD6 84181 broad.mit.edu 36 20 39545544 39545544 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon16 c.C2287T p.R763X . . . PTPRT 11122 broad.mit.edu 36 20 40534339 40534339 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133170 exon8 c.G1431T p.V477V . . . ZFP64 55734 broad.mit.edu 36 20 50202719 50202719 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018197 exon6 c.G1419A p.T473T . . . DOK5 55816 broad.mit.edu 36 20 52700403 52700403 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018431 exon8 c.C899G p.P300R . . . MC3R 4159 broad.mit.edu 36 20 54257750 54257750 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019888 exon1 c.C444T p.Y148Y . . . C20orf106 200232 broad.mit.edu 36 20 54534486 54534486 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012971 exon2 c.T469A p.Y157N . . . SPO11 23626 broad.mit.edu 36 20 55343239 55343239 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012444 exon6 c.T537C p.A179A . . . EDN3 1908 broad.mit.edu 36 20 57310072 57310072 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207033 exon2 c.C265A p.P89T . . . YTHDF1 54915 broad.mit.edu 36 20 61304234 61304234 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017798 exon4 c.G1503A p.P501P . . . ZBTB46 140685 broad.mit.edu 36 20 61892245 61892245 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025224 exon2 c.G310A p.E104K . . . OPRL1 4987 broad.mit.edu 36 20 62199728 62199728 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182647 exon4 c.G363A p.A121A . . . PLCB1 23236 broad.mit.edu 36 20 8665754 8665754 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182734 exon20 c.C2123T p.T708I . . . CD93 22918 broad.mit.edu 36 20 23014469 23014469 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012072 exon1 c.361delG p.E121fs . . . ITCH 83737 broad.mit.edu 36 20 32522951 32522951 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031483 exon16 c.1539delA p.R513fs . . . DDX27 55661 broad.mit.edu 36 20 47291911 47291911 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017895 exon17 c.2065delA p.K689fs . . . CCT8 10694 broad.mit.edu 36 21 29356353 29356353 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006585 exon11 c.C1179T p.D393D . . . GRIK1 2897 broad.mit.edu 36 21 29883084 29883084 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175611 exon10 c.G1470A p.G490G . . . CLDN8 9073 broad.mit.edu 36 21 30510114 30510114 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199328 exon1 c.A1T p.M1L . . . SON 6651 broad.mit.edu 36 21 33846675 33846675 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032195 exon3 c.C3268T p.R1090W . . . HLCS 3141 broad.mit.edu 36 21 37224567 37224567 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000411 exon6 c.C1033T p.Q345X . . . DSCAM 1826 broad.mit.edu 36 21 40641666 40641666 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001389 exon6 c.G1011A p.V337V . . . MX1 4599 broad.mit.edu 36 21 41745004 41745004 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144925 exon17 c.T1473A p.N491K . . . AGPAT3 56894 broad.mit.edu 36 21 44225396 44225396 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020132 exon9 c.G942T p.W314C . . . PWP2 5822 broad.mit.edu 36 21 44358543 44358543 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005049 exon4 c.C282T p.H94H . . . ITGB2 3689 broad.mit.edu 36 21 45146001 45146001 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127491 exon6 c.C575A p.P192H . . . POFUT2 23275 broad.mit.edu 36 21 45512001 45512001 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133635 exon8 c.G1068T p.W356C . . . MCM3AP 8888 broad.mit.edu 36 21 46528967 46528967 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003906 exon1 c.C662T p.A221V . . . CCT8L2 150160 broad.mit.edu 36 22 15452521 15452521 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014406 exon1 c.C920T p.A307V . . . SLC25A18 83733 broad.mit.edu 36 22 16450835 16450835 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031481 exon9 c.G720A p.T240T . . . TSSK2 23617 broad.mit.edu 36 22 17499834 17499834 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053006 exon1 c.G922A p.D308N . . . PPM1F 9647 broad.mit.edu 36 22 20607564 20607564 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014634 exon8 c.C1266T p.G422G . . . RGL4 266747 broad.mit.edu 36 22 22364527 22364527 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153615 exon2 c.T185C p.I62T . . . MMP11 4320 broad.mit.edu 36 22 22455719 22455719 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005940 exon8 c.C1455T p.N485N . . . CABIN1 23523 broad.mit.edu 36 22 22790525 22790525 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199281 exon15 c.T1912C p.Y638H . . . SPECC1L 23384 broad.mit.edu 36 22 23047582 23047582 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145468 exon4 c.C634A p.Q212K . . . MYO18B 84700 broad.mit.edu 36 22 24753349 24753349 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032608 exon43 c.G7409A p.R2470H . . . SEZ6L 23544 broad.mit.edu 36 22 25037793 25037793 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184776 exon8 c.G1741T p.D581Y . . . TBC1D10A 83874 broad.mit.edu 36 22 29025511 29025511 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031937 exon3 c.G339A p.P113P . . . PATZ1 23598 broad.mit.edu 36 22 30052935 30052935 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032050 exon4 c.C1868T p.A623V . . . EIF4ENIF1 56478 broad.mit.edu 36 22 30175416 30175416 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019843 exon12 c.A1686G p.A562A . . . SLC5A1 6523 broad.mit.edu 36 22 30836136 30836136 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000343 exon15 c.T1931C p.V644A . . . SYN3 8224 broad.mit.edu 36 22 31239762 31239762 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135774 exon14 c.C1657T p.R553C . . . HMOX1 3162 broad.mit.edu 36 22 34112985 34112985 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002133 exon3 c.C452T p.A151V . . . CACNG2 10369 broad.mit.edu 36 22 35290677 35290677 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006078 exon4 c.C639T p.R213R . . . SREBF2 6721 broad.mit.edu 36 22 40599901 40599901 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004599 exon5 c.C1021T p.R341X . . . PNPLA3 80339 broad.mit.edu 36 22 42664449 42664449 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025225 exon6 c.A943C p.S315R . . . FBLN1 2192 broad.mit.edu 36 22 44316712 44316712 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006487 exon10 c.C1080T p.C360C . . . PPP6R2 9701 broad.mit.edu 36 22 49201443 49201443 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014678 exon6 c.G609T p.Q203H . . . C22orf28 51493 broad.mit.edu 36 22 31124006 31124006 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014306 exon7 c.736delA p.M246fs . . . TOB2 10766 broad.mit.edu 36 22 40162712 40162712 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016272 exon2 c.584delG p.G195fs . . . EMILIN1 11117 broad.mit.edu 36 2 27159754 27159755 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007046 exon4 c.1811_1812insC p.C604fs . . . LRRTM4 80059 broad.mit.edu 36 2 77599945 77599946 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024993 exon3 c.558_559insT p.L186fs . . . GPR113 165082 broad.mit.edu 36 2 26393866 26393867 + Splice_Site INS - C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . SLC9A4 389015 broad.mit.edu 36 2 102497005 102497005 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011552 exon8 c.C1584T p.Y528Y . . . ACOXL 55289 broad.mit.edu 36 2 111279347 111279347 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142807 exon9 c.G657A p.S219S . . . FOXD4L1 200350 broad.mit.edu 36 2 113973636 113973636 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012184 exon1 c.G333A p.S111S . . . LPIN1 23175 broad.mit.edu 36 2 11872784 11872784 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon17 c.T2261C p.L754P . . . SAP130 79595 broad.mit.edu 36 2 128423951 128423951 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145928 exon18 c.A2837G p.Y946C . . . NCKAP5 344148 broad.mit.edu 36 2 133259187 133259187 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207363 exon14 c.C1667T p.T556M . . . NCKAP5 344148 broad.mit.edu 36 2 133259644 133259644 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207363 exon14 c.G1210T p.G404W . . . LRP1B 53353 broad.mit.edu 36 2 140771925 140771925 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018557 exon84 c.G12889T p.G4297X . . . MBD5 55777 broad.mit.edu 36 2 148964090 148964090 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018328 exon12 c.G3720A p.L1240L . . . NEB 4703 broad.mit.edu 36 2 152102658 152102658 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon140 c.C21076T p.R7026X . . . NEB 4703 broad.mit.edu 36 2 152249637 152249637 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon28 c.C2736T p.A912A . . . NR4A2 4929 broad.mit.edu 36 2 156894403 156894403 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006186 exon3 c.C542T p.S181L . . . ACVR1C 130399 broad.mit.edu 36 2 158109232 158109232 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111031 exon5 c.A764C p.H255P . . . BAZ2B 29994 broad.mit.edu 36 2 160003850 160003850 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013450 exon7 c.A816T p.E272D . . . ITGB6 3694 broad.mit.edu 36 2 160702408 160702408 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000888 exon10 c.C1443T p.C481C . . . KCNH7 90134 broad.mit.edu 36 2 163401515 163401515 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173162 exon2 c.T85A p.F29I . . . COBLL1 22837 broad.mit.edu 36 2 165292823 165292823 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014900 exon4 c.T563C p.L188P . . . SCN7A 6332 broad.mit.edu 36 2 167009657 167009657 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002976 exon12 c.A1487G p.E496G . . . XIRP2 129446 broad.mit.edu 36 2 167812134 167812134 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.A5320G p.T1774A . . . PRKRA 8575 broad.mit.edu 36 2 179005102 179005102 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001139517 exon7 c.C877T p.Q293X . . . TTN 7273 broad.mit.edu 36 2 179108315 179108315 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon186 c.A74077G p.T24693A . . . TTN 7273 broad.mit.edu 36 2 179117337 179117337 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon173 c.G68669A p.S22890N . . . TTN 7273 broad.mit.edu 36 2 179133779 179133779 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.C58130T p.P19377L . . . TTN 7273 broad.mit.edu 36 2 179138660 179138660 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.C53249T p.T17750M . . . TTN 7273 broad.mit.edu 36 2 179157710 179157710 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon138 c.G37708A p.V12570M . . . TTN 7273 broad.mit.edu 36 2 179177127 179177127 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon110 c.C27337T p.R9113C . . . TTN 7273 broad.mit.edu 36 2 179307810 179307810 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon48 c.G11354A p.R3785Q . . . TTN 7273 broad.mit.edu 36 2 179341871 179341871 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon38 c.C8937T p.N2979N . . . DNAJC10 54431 broad.mit.edu 36 2 183328001 183328001 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018981 exon17 c.A1578G p.T526T . . . ZNF804A 91752 broad.mit.edu 36 2 185511288 185511288 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194250 exon4 c.G2920A p.E974K . . . ANKAR 150709 broad.mit.edu 36 2 190300872 190300872 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144708 exon13 c.G2681A p.R894H . . . GTF3C3 9330 broad.mit.edu 36 2 197348098 197348098 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012086 exon13 c.T1818C p.N606N . . . PLCL1 5334 broad.mit.edu 36 2 198657632 198657632 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006226 exon2 c.G1146A p.L382L . . . AOX1 316 broad.mit.edu 36 2 201193652 201193652 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159 exon17 c.T1739C p.I580T . . . FAM126B 285172 broad.mit.edu 36 2 201584396 201584396 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173822 exon6 c.T378C p.T126T . . . LANCL1 10314 broad.mit.edu 36 2 211028133 211028133 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136574 exon4 c.C350T p.A117V . . . ERBB4 2066 broad.mit.edu 36 2 212252054 212252054 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005235 exon13 c.G1590T p.R530S . . . IKZF2 22807 broad.mit.edu 36 2 213586817 213586817 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016260 exon7 c.G799T p.E267X . . . ABCA12 26154 broad.mit.edu 36 2 215547816 215547816 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173076 exon35 c.C5399T p.T1800M . . . STK36 27148 broad.mit.edu 36 2 219245857 219245857 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015690 exon2 c.G61C p.G21R . . . STK36 27148 broad.mit.edu 36 2 219252947 219252947 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015690 exon9 c.G1036A p.A346T . . . ABCB6 10058 broad.mit.edu 36 2 219790752 219790752 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005689 exon2 c.C571T p.L191L . . . STK16 8576 broad.mit.edu 36 2 219819648 219819648 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008910 exon3 c.G112C p.E38Q . . . CHPF 79586 broad.mit.edu 36 2 220113523 220113523 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024536 exon4 c.C1154T p.P385L . . . SLC4A3 6508 broad.mit.edu 36 2 220203258 220203258 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005070 exon6 c.G751T p.V251L . . . KIAA1486 57624 broad.mit.edu 36 2 226155885 226155885 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020864 exon4 c.G1508A p.R503Q . . . COL4A4 1286 broad.mit.edu 36 2 227624020 227624020 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000092 exon33 c.C3067T p.P1023S . . . C2orf83 56918 broad.mit.edu 36 2 228184549 228184549 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020161 exon3 c.C258T p.C86C . . . SPHKAP 80309 broad.mit.edu 36 2 228590794 228590794 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142644 exon7 c.C3020T p.T1007M . . . DNER 92737 broad.mit.edu 36 2 229940057 229940057 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139072 exon12 c.C1878A p.H626Q . . . TRIP12 9320 broad.mit.edu 36 2 230358748 230358748 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004238 exon33 c.G4838A p.R1613Q . . . SP110 3431 broad.mit.edu 36 2 230745899 230745899 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080424 exon15 c.C1611T p.C537C . . . NEU2 4759 broad.mit.edu 36 2 233607606 233607606 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005383 exon2 c.C738A p.A246A . . . LRRFIP1 9208 broad.mit.edu 36 2 238292948 238292948 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137552 exon3 c.C197T p.S66L . . . POMC 5443 broad.mit.edu 36 2 25237503 25237503 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035256 exon4 c.C755T p.T252M . . . PREB 10113 broad.mit.edu 36 2 27208991 27208991 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013388 exon5 c.C736T p.R246C . . . IFT172 26160 broad.mit.edu 36 2 27553618 27553618 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015662 exon13 c.G1295A p.R432H . . . NLRC4 58484 broad.mit.edu 36 2 32328759 32328759 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon4 c.C1678A p.H560N . . . NLRC4 58484 broad.mit.edu 36 2 32329465 32329465 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021209 exon4 c.A972C p.Q324H . . . VIT 5212 broad.mit.edu 36 2 36835660 36835660 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177972 exon5 c.C368T p.S123L . . . STRN 6801 broad.mit.edu 36 2 36967417 36967417 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003162 exon8 c.A988G p.T330A . . . CALM2 805 broad.mit.edu 36 2 47243285 47243285 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001743 exon3 c.C55T p.L19L . . . SPRED2 200734 broad.mit.edu 36 2 65394331 65394331 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181784 exon6 c.G1065A p.S355S . . . RSAD2 91543 broad.mit.edu 36 2 6941098 6941098 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080657 exon2 c.G492A p.R164R . . . ATP6V1B1 525 broad.mit.edu 36 2 71045407 71045407 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001692 exon13 c.G1282A p.A428T . . . EXOC6B 23233 broad.mit.edu 36 2 72822053 72822053 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015189 exon2 c.G167A p.R56H . . . SEMA4F 10505 broad.mit.edu 36 2 74755857 74755857 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004263 exon10 c.G1210A p.V404I . . . CTNNA2 1496 broad.mit.edu 36 2 79990387 79990387 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon7 c.G1012A p.A338T . . . IMMT 10989 broad.mit.edu 36 2 86247254 86247254 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100169 exon7 c.C677A p.A226D . . . EIF2AK3 9451 broad.mit.edu 36 2 88660190 88660190 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004836 exon11 c.A1847T p.D616V . . . CNNM4 26504 broad.mit.edu 36 2 96791814 96791814 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020184 exon1 c.T1351G p.F451V . . . ZAP70 7535 broad.mit.edu 36 2 97707997 97707997 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079 exon4 c.T413C p.L138P . . . MITD1 129531 broad.mit.edu 36 2 99163825 99163825 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138798 exon1 c.G52A p.V18M . . . SLC20A1 6574 broad.mit.edu 36 2 113133078 113133079 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005415 exon7 c.984_985del p.328_329del . . . ACVR2A 92 broad.mit.edu 36 2 148400156 148400156 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001616 exon10 c.1303delA p.K435fs . . . LY75 4065 broad.mit.edu 36 2 160381708 160381708 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198760 exon30 c.4235delA p.K1412fs . . . DNAH7 56171 broad.mit.edu 36 2 196348946 196348946 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018897 exon60 c.11071delA p.S3691fs . . . MAP2 4133 broad.mit.edu 36 2 210269912 210269912 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002374 exon9 c.4414delA p.K1472fs . . . CHAC2 494143 broad.mit.edu 36 2 53854825 53854827 + In_Frame_Del DEL GAA - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 GAA GAA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001008708 exon3 c.214_216del p.72_72del . . . MTIF2 4528 broad.mit.edu 36 2 55320754 55320754 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001005369 exon15 c.1767delA p.K589fs . . . EMX1 2016 broad.mit.edu 36 2 73014500 73014502 + In_Frame_Del DEL AGA - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 AGA AGA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004097 exon3 c.782_784del p.261_262del . . . KDM3A 55818 broad.mit.edu 36 2 86544836 86544836 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146688 exon9 c.993delA p.A331fs . . . CADPS 8618 broad.mit.edu 36 3 62439014 62439015 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183394 exon21 c.3174_3175insA p.K1058fs . . . ZBTB11 27107 broad.mit.edu 36 3 102866125 102866125 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014415 exon5 c.G1747A p.A583T . . . TATDN2 9797 broad.mit.edu 36 3 10287274 10287274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014760 exon4 c.C1408T p.P470S . . . RPL24 6152 broad.mit.edu 36 3 102882745 102882745 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000986 exon6 c.C398A p.P133H . . . BBX 56987 broad.mit.edu 36 3 109000151 109000151 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142568 exon16 c.G2445A p.T815T . . . DZIP3 9666 broad.mit.edu 36 3 109855743 109855743 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014648 exon19 c.A2095G p.S699G . . . ATG7 10533 broad.mit.edu 36 3 11396484 11396484 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006395 exon17 c.C1914T p.P638P . . . CD200R1L 344807 broad.mit.edu 36 3 114029165 114029165 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008784 exon3 c.A169G p.I57V . . . WDR52 55779 broad.mit.edu 36 3 114635188 114635188 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164496 exon2 c.A14T p.D5V . . . ZBTB20 26137 broad.mit.edu 36 3 115540727 115540727 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164343 exon12 c.G1822A p.V608M . . . FSTL1 11167 broad.mit.edu 36 3 121606415 121606415 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007085 exon7 c.G556T p.D186Y . . . POLQ 10721 broad.mit.edu 36 3 122661671 122661671 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon25 c.T7068C p.A2356A . . . ILDR1 286676 broad.mit.edu 36 3 123194799 123194799 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175924 exon6 c.G1355A p.R452H . . . KALRN 8997 broad.mit.edu 36 3 125897755 125897755 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024660 exon54 c.C7662T p.H2554H . . . KALRN 8997 broad.mit.edu 36 3 125899183 125899183 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024660 exon55 c.G7753A p.V2585M . . . OSBPL11 114885 broad.mit.edu 36 3 126749013 126749013 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022776 exon10 c.A1768G p.N590D . . . PLXND1 23129 broad.mit.edu 36 3 130766940 130766940 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015103 exon25 c.G4454A p.R1485H . . . CPNE4 131034 broad.mit.edu 36 3 132925014 132925014 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130808 exon3 c.A326C p.D109A . . . DNAJC13 23317 broad.mit.edu 36 3 133704804 133704804 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015268 exon41 c.G4773A p.G1591G . . . ESYT3 83850 broad.mit.edu 36 3 139675853 139675853 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031913 exon20 c.C2437T p.R813W . . . CLSTN2 64084 broad.mit.edu 36 3 141606170 141606170 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022131 exon4 c.C509T p.T170M . . . C3orf20 84077 broad.mit.edu 36 3 14699295 14699295 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032137 exon3 c.G71A p.R24H . . . FAM194A 131831 broad.mit.edu 36 3 151904198 151904198 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152394 exon1 c.T178C p.L60L . . . IGSF10 285313 broad.mit.edu 36 3 152649265 152649265 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178822 exon4 c.G1194A p.P398P . . . GPR149 344758 broad.mit.edu 36 3 155629330 155629330 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001038705 exon1 c.C769T p.P257S . . . IFT80 57560 broad.mit.edu 36 3 161556613 161556613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190242 exon7 c.G248A p.R83H . . . PLD1 5337 broad.mit.edu 36 3 172887975 172887975 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130081 exon15 c.G1633A p.D545N . . . SPATA16 83893 broad.mit.edu 36 3 174090079 174090079 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031955 exon11 c.G1685A p.R562Q . . . EIF4G1 1981 broad.mit.edu 36 3 185531828 185531828 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182917 exon28 c.T4245C p.G1415G . . . MASP1 5648 broad.mit.edu 36 3 188453715 188453715 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031849 exon6 c.T827C p.L276P . . . TP63 8626 broad.mit.edu 36 3 191069180 191069180 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114980 exon6 c.C828T p.N276N . . . ATP13A5 344905 broad.mit.edu 36 3 194564747 194564747 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198505 exon2 c.G80A p.R27Q . . . UBXN7 26043 broad.mit.edu 36 3 197580704 197580704 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015562 exon7 c.T691C p.L231L . . . CMC1 152100 broad.mit.edu 36 3 28279847 28279847 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182523 exon2 c.C81A p.A27A . . . ZCWPW2 152098 broad.mit.edu 36 3 28537503 28537503 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040432 exon8 c.A801C p.E267D . . . RBMS3 27303 broad.mit.edu 36 3 29451302 29451302 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003793 exon2 c.A140G p.N47S . . . GPD1L 23171 broad.mit.edu 36 3 32175475 32175475 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015141 exon6 c.C722T p.A241V . . . CNOT10 25904 broad.mit.edu 36 3 32744201 32744201 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015442 exon10 c.A1050G p.L350L . . . DLEC1 9940 broad.mit.edu 36 3 38055795 38055795 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007337 exon1 c.G75A p.A25A . . . ACVR2B 93 broad.mit.edu 36 3 38493863 38493863 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001106 exon2 c.G134A p.G45D . . . CCR8 1237 broad.mit.edu 36 3 39349652 39349652 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005201 exon2 c.C826A p.Q276K . . . TRAK1 22906 broad.mit.edu 36 3 42219176 42219176 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042646 exon13 c.G1672A p.G558S . . . C3orf39 84892 broad.mit.edu 36 3 43096931 43096931 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032806 exon2 c.C997T p.R333W . . . ZNF167 55888 broad.mit.edu 36 3 44587853 44587853 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018651 exon6 c.G2247A p.L749L . . . KIF9 64147 broad.mit.edu 36 3 47287933 47287933 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182902 exon5 c.G389A p.R130H . . . QRICH1 54870 broad.mit.edu 36 3 49069792 49069792 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198880 exon3 c.T845C p.L282S . . . LAMB2 3913 broad.mit.edu 36 3 49136408 49136408 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002292 exon24 c.C3554T p.P1185L . . . BSN 8927 broad.mit.edu 36 3 49667360 49667360 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003458 exon5 c.G5367A p.G1789G . . . SLC38A3 10991 broad.mit.edu 36 3 50231126 50231126 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006841 exon13 c.G1134A p.T378T . . . DOCK3 1795 broad.mit.edu 36 3 51290182 51290182 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon26 c.C2739T p.G913G . . . DOCK3 1795 broad.mit.edu 36 3 51367368 51367368 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon41 c.T4082C p.V1361A . . . IQCF1 132141 broad.mit.edu 36 3 51904082 51904082 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152397 exon4 c.G482A p.R161H . . . TLR9 54106 broad.mit.edu 36 3 52232956 52232956 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017442 exon2 c.C416A p.P139H . . . ITIH4 3700 broad.mit.edu 36 3 52822542 52822542 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002218 exon24 c.C2728T p.R910C . . . CADPS 8618 broad.mit.edu 36 3 62493713 62493713 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183393 exon13 c.C2113T p.R705W . . . ATXN7 6314 broad.mit.edu 36 3 63948927 63948927 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177387 exon8 c.C1248T p.P416P . . . ROBO2 6092 broad.mit.edu 36 3 77728534 77728534 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128929 exon18 c.T2738C p.L913P . . . ROBO1 6091 broad.mit.edu 36 3 78799825 78799825 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002941 exon14 c.A1864G p.K622E . . . CADM2 253559 broad.mit.edu 36 3 86044308 86044308 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167674 exon5 c.G598A p.A200T . . . HTR1F 3355 broad.mit.edu 36 3 88123491 88123491 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000866 exon2 c.C902T p.A301V . . . ZNF654 55279 broad.mit.edu 36 3 88272010 88272010 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018293 exon1 c.A860C p.Q287P . . . EPHA3 2042 broad.mit.edu 36 3 89582168 89582168 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005233 exon15 c.G2648A p.R883Q . . . BRPF1 7862 broad.mit.edu 36 3 9751310 9751310 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004634 exon2 c.T486C p.H162H . . . CPOX 1371 broad.mit.edu 36 3 99782232 99782232 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000097 exon7 c.G1350A p.R450R . . . FXR1 8087 broad.mit.edu 36 3 182148922 182148922 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013438 exon5 c.364delA p.K122fs . . . MTTP 4547 broad.mit.edu 36 4 100723608 100723608 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000253 exon4 c.T304G p.F102V . . . TACR3 6870 broad.mit.edu 36 4 104860111 104860111 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001059 exon1 c.G171A p.A57A . . . ALPK1 80216 broad.mit.edu 36 4 113571552 113571552 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025144 exon11 c.G1400T p.C467F . . . UGT8 7368 broad.mit.edu 36 4 115764221 115764221 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128174 exon2 c.G736A p.V246I . . . SEC24D 9871 broad.mit.edu 36 4 119956318 119956318 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014822 exon5 c.G409A p.A137T . . . SYNPO2 171024 broad.mit.edu 36 4 120198337 120198337 + Silent SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133477 exon5 c.A3586C p.R1196R . . . TNIP3 79931 broad.mit.edu 36 4 122297832 122297832 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128843 exon6 c.C230T p.T77M . . . KIAA1109 84162 broad.mit.edu 36 4 123476807 123476807 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon68 c.A11859T p.K3953N . . . ADAD1 132612 broad.mit.edu 36 4 123551937 123551937 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139243 exon9 c.T959A p.I320N . . . SLC25A31 83447 broad.mit.edu 36 4 128871312 128871312 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031291 exon1 c.G162A p.S54S . . . LARP1B 55132 broad.mit.edu 36 4 129247837 129247837 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178043 exon9 c.C907T p.R303C . . . BOD1L 259282 broad.mit.edu 36 4 13215578 13215578 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148894 exon10 c.C2044T p.R682C . . . PCDH10 57575 broad.mit.edu 36 4 134292386 134292386 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032961 exon1 c.C1641T p.D547D . . . RNF150 57484 broad.mit.edu 36 4 142273224 142273224 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020724 exon1 c.C189T p.G63G . . . GYPB 2994 broad.mit.edu 36 4 145141863 145141863 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002100 exon2 c.A61C p.S21R . . . PRMT10 90826 broad.mit.edu 36 4 148779595 148779595 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138364 exon11 c.C2288T p.T763I . . . KIAA0922 23240 broad.mit.edu 36 4 154724173 154724173 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon11 c.G959A p.R320H . . . DCHS2 54798 broad.mit.edu 36 4 155375834 155375834 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon25 c.C8055T p.D2685D . . . GLRB 2743 broad.mit.edu 36 4 158311173 158311173 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166060 exon10 c.A1337G p.N446S . . . PALLD 23022 broad.mit.edu 36 4 169840798 169840798 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016081 exon5 c.T1229C p.V410A . . . WDR17 116966 broad.mit.edu 36 4 177331463 177331463 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181265 exon25 c.A3296G p.D1099G . . . ASB5 140458 broad.mit.edu 36 4 177427184 177427184 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080874 exon1 c.C70A p.L24M . . . ODZ3 55714 broad.mit.edu 36 4 183482267 183482267 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon1 c.C100T p.R34W . . . C4orf41 60684 broad.mit.edu 36 4 184822061 184822061 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199053 exon2 c.C47A p.P16H . . . FAM149A 25854 broad.mit.edu 36 4 187311873 187311873 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006655 exon4 c.A167C p.H56P . . . WHSC1 7468 broad.mit.edu 36 4 1923647 1923647 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133331 exon12 c.G2028A p.P676P . . . GBA3 57733 broad.mit.edu 36 4 22358715 22358715 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020973 exon3 c.G985A p.D329N . . . LGI2 55203 broad.mit.edu 36 4 24614496 24614496 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018176 exon8 c.G1313A p.R438H . . . STIM2 57620 broad.mit.edu 36 4 26633422 26633422 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001169118 exon13 c.T1971C p.G657G . . . HTT 3064 broad.mit.edu 36 4 3185577 3185577 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002111 exon50 c.G6869T p.G2290V . . . RFC1 5981 broad.mit.edu 36 4 38978085 38978085 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002913 exon21 c.T2759C p.V920A . . . ZNF721 170960 broad.mit.edu 36 4 426840 426840 + Silent SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133474 exon3 c.C1416A p.P472P . . . CORIN 10699 broad.mit.edu 36 4 47297017 47297017 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006587 exon21 c.T2917C p.Y973H . . . CWH43 80157 broad.mit.edu 36 4 48729433 48729433 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025087 exon12 c.C1602T p.T534T . . . SPATA18 132671 broad.mit.edu 36 4 52645881 52645881 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145263 exon11 c.T1522G p.L508V . . . LNX1 84708 broad.mit.edu 36 4 54042778 54042778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126328 exon7 c.G1351A p.A451T . . . KIAA0232 9778 broad.mit.edu 36 4 6916236 6916236 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014743 exon7 c.C3226A p.L1076I . . . ADAMTS3 9508 broad.mit.edu 36 4 73375572 73375572 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon20 c.G2795A p.R932H . . . ADAMTS3 9508 broad.mit.edu 36 4 73380314 73380314 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon19 c.C2644A p.H882N . . . AFAP1 60312 broad.mit.edu 36 4 7821602 7821602 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134647 exon17 c.T2287G p.S763A . . . PAQR3 152559 broad.mit.edu 36 4 80079381 80079381 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040202 exon1 c.A22C p.S8R . . . HELQ 113510 broad.mit.edu 36 4 84586239 84586239 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133636 exon5 c.C1417T p.R473C . . . HERC6 55008 broad.mit.edu 36 4 89582423 89582423 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017912 exon23 c.C2856T p.D952D . . . SLC2A9 56606 broad.mit.edu 36 4 9501406 9501406 + Nonsense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001290 exon10 c.A1054T p.R352X . . . BMPR1B 658 broad.mit.edu 36 4 96244675 96244675 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001203 exon4 c.G77A p.R26H . . . FAT4 79633 broad.mit.edu 36 4 126630852 126630852 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon17 c.13425delG p.Q4475fs . . . RNF175 285533 broad.mit.edu 36 4 154853134 154853134 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173662 exon8 c.809delA p.K270fs . . . TMPRSS11A 339967 broad.mit.edu 36 4 68492941 68492941 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182606 exon3 c.143delA p.K48fs . . . ACOX3 8310 broad.mit.edu 36 4 8458608 8458608 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003501 exon7 c.750delA p.K250fs . . . WDFY3 23001 broad.mit.edu 36 4 85935145 85935145 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014991 exon20 c.3179delT p.L1060fs . . . MCC 4163 broad.mit.edu 36 5 112417448 112417448 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085377 exon15 c.A2321G p.K774R . . . MCC 4163 broad.mit.edu 36 5 112417528 112417528 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085377 exon15 c.C2241T p.C747C . . . ZNF608 57507 broad.mit.edu 36 5 124011165 124011165 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020747 exon4 c.G2811A p.P937P . . . GRAMD3 65983 broad.mit.edu 36 5 125856536 125856536 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023927 exon14 c.A1288G p.N430D . . . ALDH7A1 501 broad.mit.edu 36 5 125915718 125915718 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001182 exon14 c.G1211A p.R404H . . . MEGF10 84466 broad.mit.edu 36 5 126796999 126796999 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032446 exon15 c.A1739C p.N580T . . . SLC12A2 6558 broad.mit.edu 36 5 127514897 127514897 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001046 exon14 c.A2173G p.I725V . . . FBN2 2201 broad.mit.edu 36 5 127758803 127758803 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon9 c.G1142A p.G381E . . . ACSL6 23305 broad.mit.edu 36 5 131330058 131330058 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009185 exon17 c.C1663T p.L555L . . . P4HA2 8974 broad.mit.edu 36 5 131580851 131580851 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017974 exon4 c.T269C p.V90A . . . PITX1 5307 broad.mit.edu 36 5 134394989 134394989 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002653 exon2 c.G278A p.R93H . . . KDM3B 51780 broad.mit.edu 36 5 137763519 137763519 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016604 exon11 c.A3118G p.N1040D . . . ETF1 2107 broad.mit.edu 36 5 137874196 137874196 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004730 exon9 c.C1040T p.T347I . . . HSPA9 3313 broad.mit.edu 36 5 137921053 137921053 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004134 exon14 c.A1665C p.K555N . . . CTNNA1 1495 broad.mit.edu 36 5 138288247 138288247 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001903 exon12 c.G1696A p.G566R . . . NRG2 9542 broad.mit.edu 36 5 139212713 139212713 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013981 exon7 c.G1358A p.S453N . . . PCDHA2 56146 broad.mit.edu 36 5 140154998 140154998 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018905 exon1 c.C265T p.R89W . . . PCDHA9 9752 broad.mit.edu 36 5 140210534 140210534 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014005 exon1 c.G2270A p.R757K . . . PCDHA13 56136 broad.mit.edu 36 5 140242177 140242177 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031865 exon1 c.G140A p.R47H . . . PCDHB1 29930 broad.mit.edu 36 5 140412112 140412112 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013340 exon1 c.G873A p.T291T . . . PCDHB13 56123 broad.mit.edu 36 5 140575778 140575778 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018933 exon1 c.C1899T p.R633R . . . PCDHGB1 56104 broad.mit.edu 36 5 140711113 140711113 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018922 exon1 c.C1102T p.R368X . . . PCDHGB2 56103 broad.mit.edu 36 5 140720011 140720011 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018923 exon1 c.C125T p.A42V . . . PCDHGA11 56105 broad.mit.edu 36 5 140781955 140781955 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018914 exon1 c.G977T p.G326V . . . PLAC8L1 153770 broad.mit.edu 36 5 145445310 145445310 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029869 exon3 c.C300T p.I100I . . . JAKMIP2 9832 broad.mit.edu 36 5 147003898 147003898 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014790 exon7 c.C1140T p.L380L . . . JAKMIP2 9832 broad.mit.edu 36 5 147004689 147004689 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014790 exon6 c.G1000A p.A334T . . . SLC36A2 153201 broad.mit.edu 36 5 150681865 150681865 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181776 exon9 c.G1115A p.R372Q . . . FAT2 2196 broad.mit.edu 36 5 150885592 150885592 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon17 c.C10436A p.P3479Q . . . CYFIP2 26999 broad.mit.edu 36 5 156660446 156660446 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037333 exon6 c.A533G p.K178R . . . ODZ2 57451 broad.mit.edu 36 5 167577853 167577853 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon23 c.G4352A p.G1451D . . . DOCK2 1794 broad.mit.edu 36 5 169041363 169041363 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon7 c.G508A p.G170R . . . DOCK2 1794 broad.mit.edu 36 5 169407170 169407170 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004946 exon40 c.G4045A p.G1349S . . . ERGIC1 57222 broad.mit.edu 36 5 172283679 172283679 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031711 exon6 c.G441A p.T147T . . . C5orf25 375484 broad.mit.edu 36 5 175704816 175704816 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198567 exon9 c.A1136C p.D379A . . . ZNF346 23567 broad.mit.edu 36 5 176421675 176421675 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012279 exon6 c.C714A p.G238G . . . C5orf45 51149 broad.mit.edu 36 5 179197130 179197130 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017987 exon5 c.G734A p.C245Y . . . GFPT2 9945 broad.mit.edu 36 5 179696157 179696157 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005110 exon3 c.G142A p.E48K . . . CDH6 1004 broad.mit.edu 36 5 31333177 31333177 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004932 exon4 c.C548T p.A183V . . . PDZD2 23037 broad.mit.edu 36 5 32084449 32084449 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178140 exon7 c.G1567T p.V523L . . . C5orf42 65250 broad.mit.edu 36 5 37220929 37220929 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023073 exon25 c.C4199G p.T1400S . . . WDR70 55100 broad.mit.edu 36 5 37736920 37736920 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018034 exon12 c.A1196G p.D399G . . . C5orf51 285636 broad.mit.edu 36 5 41952882 41952882 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175921 exon6 c.T609C p.F203F . . . SKIV2L2 23517 broad.mit.edu 36 5 54698312 54698312 + Silent SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015360 exon16 c.C1662A p.G554G . . . CWC27 10283 broad.mit.edu 36 5 64115435 64115435 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005869 exon4 c.G269A p.R90Q . . . NLN 57486 broad.mit.edu 36 5 65154446 65154446 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020726 exon13 c.C2062T p.R688C . . . SLC30A5 64924 broad.mit.edu 36 5 68453330 68453330 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022902 exon13 c.C1623T p.S541S . . . CCNB1 891 broad.mit.edu 36 5 68505871 68505871 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031966 exon5 c.G584A p.R195Q . . . MAP1B 4131 broad.mit.edu 36 5 71530312 71530312 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.T5374C p.S1792P . . . ZNF366 167465 broad.mit.edu 36 5 71788115 71788115 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152625 exon3 c.C1396T p.R466X . . . TNPO1 3842 broad.mit.edu 36 5 72214710 72214710 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153188 exon11 c.C1021T p.R341X . . . AP3B1 8546 broad.mit.edu 36 5 77370670 77370670 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003664 exon23 c.A2762G p.E921G . . . CMYA5 202333 broad.mit.edu 36 5 79064570 79064570 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153610 exon2 c.A4226G p.E1409G . . . GPR98 84059 broad.mit.edu 36 5 90142248 90142248 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon74 c.G15415A p.E5139K . . . PCSK1 5122 broad.mit.edu 36 5 95773923 95773923 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177875 exon7 c.C596T p.T199M . . . LNPEP 4012 broad.mit.edu 36 5 96341195 96341195 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005575 exon2 c.A617C p.N206T . . . PLK2 10769 broad.mit.edu 36 5 57788769 57788769 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006622 exon7 c.1004delT p.L335fs . . . CDKAL1 54901 broad.mit.edu 36 6 21173410 21173411 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017774 exon12 c.1208_1209insA p.A403fs . . . ZNF184 7738 broad.mit.edu 36 6 27528151 27528152 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007149 exon6 c.1166_1167insA p.T389fs . . . HLA-B 3106 broad.mit.edu 36 6 31432580 31432581 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - . . . . Unknown Unknown Somatic Phase_I Capture . Illumina HiSeq NM_005514 exon2 c.207_208insT p.E69fs . . . PKHD1 5314 broad.mit.edu 36 6 52017773 52017774 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138694 exon25 c.2665_2666insT p.L889fs . . . HACE1 57531 broad.mit.edu 36 6 105338985 105338985 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020771 exon13 c.G1478T p.R493I . . . QRSL1 55278 broad.mit.edu 36 6 107209458 107209458 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018292 exon8 c.C1010T p.S337L . . . ARMC2 84071 broad.mit.edu 36 6 109356117 109356117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032131 exon11 c.C1484T p.A495V . . . REV3L 5980 broad.mit.edu 36 6 111801787 111801787 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002912 exon13 c.T4464C p.P1488P . . . HSF2 3298 broad.mit.edu 36 6 122783033 122783033 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004506 exon7 c.A648G p.I216M . . . NCOA7 135112 broad.mit.edu 36 6 126285527 126285527 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199620 exon15 c.C2377G p.R793G . . . TRMT11 60487 broad.mit.edu 36 6 126374166 126374166 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031712 exon9 c.T835C p.L279L . . . C6orf174 387104 broad.mit.edu 36 6 127838238 127838238 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012279 exon6 c.G2626A p.A876T . . . PHACTR1 221692 broad.mit.edu 36 6 13314323 13314323 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030948 exon7 c.C962T p.A321V . . . MAP7 9053 broad.mit.edu 36 6 136725291 136725291 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198614 exon12 c.G1582T p.E528X . . . AIG1 51390 broad.mit.edu 36 6 143646984 143646984 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016108 exon4 c.G444A p.S148S . . . FBXO30 84085 broad.mit.edu 36 6 146168013 146168013 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032145 exon2 c.A1222G p.T408A . . . SHPRH 257218 broad.mit.edu 36 6 146306520 146306520 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173082 exon9 c.T1690C p.Y564H . . . GRM1 2911 broad.mit.edu 36 6 146522242 146522242 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114329 exon3 c.G766A p.A256T . . . STXBP5 134957 broad.mit.edu 36 6 147690047 147690047 + Silent SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127715 exon18 c.T2022G p.S674S . . . ULBP2 80328 broad.mit.edu 36 6 150309255 150309255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025217 exon3 c.G404A p.S135N . . . C6orf97 80129 broad.mit.edu 36 6 151936011 151936011 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025059 exon6 c.A784G p.S262G . . . SYNJ2 8871 broad.mit.edu 36 6 158417739 158417739 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003898 exon17 c.C2386T p.R796C . . . C6orf118 168090 broad.mit.edu 36 6 165635712 165635712 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144980 exon2 c.G89A p.C30Y . . . TTLL2 83887 broad.mit.edu 36 6 167673622 167673622 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031949 exon3 c.G244A p.A82T . . . THBS2 7058 broad.mit.edu 36 6 169374117 169374117 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003247 exon14 c.C2034T p.C678C . . . NUP153 9972 broad.mit.edu 36 6 17777506 17777506 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005124 exon7 c.T1011A p.N337K . . . KIF13A 63971 broad.mit.edu 36 6 17893821 17893821 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022113 exon28 c.C3392T p.A1131V . . . SLC17A1 6568 broad.mit.edu 36 6 25934766 25934766 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005074 exon3 c.C109T p.R37C . . . SLC17A2 10246 broad.mit.edu 36 6 26024992 26024992 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005835 exon8 c.C830T p.A277V . . . BTN1A1 696 broad.mit.edu 36 6 26616885 26616885 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001732 exon7 c.T1085C p.V362A . . . HIST1H4L 8368 broad.mit.edu 36 6 27949181 27949181 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003546 exon1 c.C87T p.G29G . . . OR2B2 81697 broad.mit.edu 36 6 27987487 27987487 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033057 exon1 c.C590T p.A197V . . . SERPINB6 5269 broad.mit.edu 36 6 2893551 2893551 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195291 exon8 c.G1111A p.G371S . . . HLA-G 3135 broad.mit.edu 36 6 29905586 29905586 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002127 exon6 c.C910T p.P304S . . . TRIM15 89870 broad.mit.edu 36 6 30246318 30246318 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033229 exon5 c.C793T p.R265C . . . GNL1 2794 broad.mit.edu 36 6 30628920 30628920 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005275 exon7 c.G824A p.R275Q . . . C6orf136 221545 broad.mit.edu 36 6 30726832 30726832 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161376 exon3 c.G1100A p.R367H . . . TNXB 7148 broad.mit.edu 36 6 32149526 32149526 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon12 c.G4557A p.P1519P . . . GRM4 2914 broad.mit.edu 36 6 34167825 34167825 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000841 exon2 c.G549A p.A183A . . . TEAD3 7005 broad.mit.edu 36 6 35562284 35562284 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003214 exon2 c.A134T p.E45V . . . SRPK1 6732 broad.mit.edu 36 6 35945340 35945340 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003137 exon11 c.A1308G p.S436S . . . BTBD9 114781 broad.mit.edu 36 6 38364179 38364179 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172418 exon8 c.C1211T p.A404V . . . DNAH8 1769 broad.mit.edu 36 6 38837526 38837526 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001371 exon9 c.A935G p.Q312R . . . LRFN2 57497 broad.mit.edu 36 6 40507488 40507488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020737 exon2 c.G1343A p.R448Q . . . GUCA1A 2978 broad.mit.edu 36 6 42255027 42255027 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000409 exon6 c.C514T p.R172X . . . UBR2 23304 broad.mit.edu 36 6 42766844 42766844 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015255 exon47 c.G5223T p.Q1741H . . . CUL9 23113 broad.mit.edu 36 6 43262716 43262716 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon5 c.G1292A p.W431X . . . RPP40 10799 broad.mit.edu 36 6 4941272 4941272 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006638 exon7 c.C805T p.P269S . . . TFAP2D 83741 broad.mit.edu 36 6 50791249 50791249 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172238 exon2 c.C501T p.S167S . . . DST 667 broad.mit.edu 36 6 56454868 56454868 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015548 exon71 c.G13601A p.R4534H . . . F13A1 2162 broad.mit.edu 36 6 6170085 6170085 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000129 exon7 c.C806T p.A269V . . . LGSN 51557 broad.mit.edu 36 6 64048335 64048335 + Silent SNP C T T rs61758980 unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016571 exon4 c.G1080A p.A360A . . . PHF3 23469 broad.mit.edu 36 6 64480956 64480956 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015153 exon15 c.C5513A p.P1838Q . . . LMBRD1 55788 broad.mit.edu 36 6 70465675 70465675 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018368 exon13 c.G1319T p.S440I . . . RIMS1 22999 broad.mit.edu 36 6 73002056 73002056 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168410 exon3 c.G138C p.W46C . . . BMP6 654 broad.mit.edu 36 6 7825569 7825569 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001718 exon7 c.C1536T p.C512C . . . LCA5 167691 broad.mit.edu 36 6 80258061 80258061 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181714 exon7 c.A1061G p.Y354C . . . ZNF292 23036 broad.mit.edu 36 6 88026663 88026663 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015021 exon8 c.G6597T p.M2199I . . . EPHA7 2045 broad.mit.edu 36 6 94123294 94123294 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004440 exon5 c.G1186T p.E396X . . . GPR63 81491 broad.mit.edu 36 6 97353864 97353864 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143957 exon3 c.G465A p.R155R . . . THEMIS 387357 broad.mit.edu 36 6 128176544 128176544 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010923 exon4 c.935delA p.K312fs . . . SYNJ2 8871 broad.mit.edu 36 6 158427997 158427997 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003898 exon23 c.3331delC p.P1111fs . . . PNLDC1 154197 broad.mit.edu 36 6 160141775 160141775 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173516 exon2 c.25delT p.F9fs . . . MRS2 57380 broad.mit.edu 36 6 24531806 24531806 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020662 exon11 c.1237delA p.K413fs . . . ZFP57 346171 broad.mit.edu 36 6 29749338 29749338 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109809 exon4 c.529delT p.C177fs . . . TTK 7272 broad.mit.edu 36 6 80808629 80808629 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166691 exon22 c.2562delA p.G854fs . . . BTN2A3 54718 broad.mit.edu 36 6 26539164 26539164 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . GNA12 2768 broad.mit.edu 36 7 2739629 2739630 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_007353 exon3 c.558_559insT p.L186fs . . . SRRT 51593 broad.mit.edu 36 7 100322902 100322902 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128852 exon16 c.G1998T p.E666D . . . MUC17 140453 broad.mit.edu 36 7 100483050 100483050 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040105 exon10 c.T13167C p.S4389S . . . TRIM56 81844 broad.mit.edu 36 7 100519057 100519057 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030961 exon3 c.C1744T p.R582C . . . ATXN7L1 222255 broad.mit.edu 36 7 105189101 105189101 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152749 exon4 c.G400A p.G134R . . . PIK3CG 5294 broad.mit.edu 36 7 106296281 106296281 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002649 exon2 c.G1039A p.E347K . . . LAMB1 3912 broad.mit.edu 36 7 107414010 107414010 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002291 exon6 c.C458T p.S153L . . . NRCAM 4897 broad.mit.edu 36 7 107588125 107588125 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037132 exon28 c.G3515A p.G1172D . . . KCND2 3751 broad.mit.edu 36 7 119702865 119702865 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012281 exon1 c.T943C p.Y315H . . . AASS 10157 broad.mit.edu 36 7 121542442 121542442 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005763 exon9 c.G965A p.R322H . . . GCC1 79571 broad.mit.edu 36 7 127010186 127010186 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024523 exon2 c.A1446G p.Q482Q . . . PARP12 64761 broad.mit.edu 36 7 139403229 139403229 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022750 exon3 c.T656C p.L219P . . . BRAF 673 broad.mit.edu 36 7 140099605 140099605 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . OR2F2 135948 broad.mit.edu 36 7 143263758 143263758 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004685 exon1 c.C500A p.P167H . . . ZNF425 155054 broad.mit.edu 36 7 148431889 148431889 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001661 exon4 c.G2007A p.P669P . . . ZNF398 57541 broad.mit.edu 36 7 148506703 148506703 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020781 exon7 c.T293C p.L98P . . . XRCC2 7516 broad.mit.edu 36 7 151977290 151977290 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005431 exon3 c.A213C p.E71D . . . HDAC9 9734 broad.mit.edu 36 7 18835642 18835642 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178423 exon19 c.C2403T p.T801T . . . SP4 6671 broad.mit.edu 36 7 21488152 21488152 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003112 exon5 c.C1993T p.R665X . . . TTYH3 80727 broad.mit.edu 36 7 2656097 2656097 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025250 exon7 c.C820T p.P274S . . . CCDC129 223075 broad.mit.edu 36 7 31584182 31584182 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194300 exon8 c.C779A p.A260D . . . EEPD1 80820 broad.mit.edu 36 7 36303225 36303225 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030636 exon7 c.G1414A p.A472T . . . SDK1 221935 broad.mit.edu 36 7 3968911 3968911 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon9 c.G1331A p.R444H . . . SDK1 221935 broad.mit.edu 36 7 3975512 3975512 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon11 c.C1644T p.A548A . . . INHBA 3624 broad.mit.edu 36 7 41706123 41706123 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002192 exon2 c.G375A p.T125T . . . DDX56 54606 broad.mit.edu 36 7 44575089 44575089 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019082 exon11 c.G1321A p.A441T . . . IGFBP3 3486 broad.mit.edu 36 7 45922676 45922676 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000598 exon3 c.A746T p.K249M . . . PKD1L1 168507 broad.mit.edu 36 7 47883685 47883685 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138295 exon22 c.C3590T p.A1197V . . . PKD1L1 168507 broad.mit.edu 36 7 47886889 47886889 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138295 exon21 c.T3482G p.L1161R . . . ABCA13 154664 broad.mit.edu 36 7 48282430 48282430 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon15 c.C2458A p.P820T . . . ABCA13 154664 broad.mit.edu 36 7 48360939 48360939 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152701 exon28 c.T10195G p.C3399G . . . POM121L12 285877 broad.mit.edu 36 7 53070986 53070986 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182595 exon1 c.C128T p.T43M . . . EGFR 1956 broad.mit.edu 36 7 55226928 55226928 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005228 exon21 c.G2492A p.R831H EGFR,NS,NS,Substitution - Missense,-2 . . TYW1 55253 broad.mit.edu 36 7 66340784 66340784 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018264 exon16 c.C2032A p.L678I . . . WBSCR17 64409 broad.mit.edu 36 7 70813828 70813828 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022479 exon10 c.C1647A p.Y549X . . . GTF2IRD1 9569 broad.mit.edu 36 7 73643212 73643212 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005685 exon24 c.G2521A p.D841N . . . HGF 3082 broad.mit.edu 36 7 81219438 81219438 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010934 exon5 c.C559T p.P187S . . . SEMA3D 223117 broad.mit.edu 36 7 84565114 84565114 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152754 exon2 c.A255G p.G85G . . . KIAA1324L 222223 broad.mit.edu 36 7 86394050 86394050 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152748 exon8 c.A707G p.Y236C . . . ZNF804B 219578 broad.mit.edu 36 7 88685459 88685459 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181646 exon2 c.T163C p.F55L . . . COL1A2 1278 broad.mit.edu 36 7 93896468 93896468 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000089 exon51 c.G3744T p.K1248N . . . CASD1 64921 broad.mit.edu 36 7 94011677 94011677 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022900 exon11 c.C1375T p.H459Y . . . BAIAP2L1 55971 broad.mit.edu 36 7 97774966 97774966 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018842 exon10 c.G1134T p.W378C . . . CPSF4 10898 broad.mit.edu 36 7 98889554 98889554 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006693 exon7 c.G600A p.S200S . . . IQUB 154865 broad.mit.edu 36 7 122930648 122930648 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178827 exon4 c.538delA p.I180fs . . . ZNF212 7988 broad.mit.edu 36 7 148578565 148578565 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012256 exon2 c.407delC p.A136fs . . . CACNA2D1 781 broad.mit.edu 36 7 81451932 81451932 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000722 exon22 c.1828delT p.Y610fs . . . ICA1 3382 broad.mit.edu 36 7 8164776 8164776 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004968 exon7 c.611delA p.N204fs . . . ANKIB1 54467 broad.mit.edu 36 7 91774850 91774850 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_019004 exon3 c.430delA p.K144fs . . . CHCHD3 54927 broad.mit.edu 36 7 132120878 132120878 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . DPY19L2P1 554236 broad.mit.edu 36 7 35123906 35123906 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . VPS13B 157680 broad.mit.edu 36 8 100583180 100583180 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152564 exon26 c.A3960G p.G1320G . . . ODF1 4956 broad.mit.edu 36 8 103633243 103633243 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024410 exon1 c.G112A p.D38N . . . PKHD1L1 93035 broad.mit.edu 36 8 110526612 110526612 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177531 exon38 c.G5338A p.A1780T . . . CSMD3 114788 broad.mit.edu 36 8 113383277 113383277 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon53 c.G8361T p.L2787F . . . CSMD3 114788 broad.mit.edu 36 8 113401329 113401329 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon46 c.C7223T p.T2408M . . . CSMD3 114788 broad.mit.edu 36 8 113767007 113767007 + Silent SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon15 c.T2286G p.S762S . . . NEIL2 252969 broad.mit.edu 36 8 11666503 11666503 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001135748 exon3 c.G138T p.Q46H . . . FDFT1 2222 broad.mit.edu 36 8 11733376 11733376 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004462 exon8 c.C1103T p.T368M . . . SLC30A8 169026 broad.mit.edu 36 8 118239155 118239155 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173851 exon4 c.A463T p.T155S . . . FBXO32 114907 broad.mit.edu 36 8 124613327 124613327 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058229 exon4 c.G364A p.V122M . . . KCNQ3 3786 broad.mit.edu 36 8 133256936 133256936 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004519 exon5 c.A879G p.G293G . . . ZFAT 57623 broad.mit.edu 36 8 135718924 135718924 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174157 exon3 c.T410G p.I137S . . . CYP11B1 1584 broad.mit.edu 36 8 143955580 143955580 + Silent SNP G A A rs61751149 unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001026213 exon3 c.C456T p.N152N . . . TOP1MT 116447 broad.mit.edu 36 8 144463016 144463016 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052963 exon14 c.C1776T p.L592L . . . GPAA1 8733 broad.mit.edu 36 8 145211448 145211448 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003801 exon7 c.C958T p.R320C . . . INTS10 55174 broad.mit.edu 36 8 19738925 19738925 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018142 exon13 c.C1613A p.S538X . . . C8orf80 389643 broad.mit.edu 36 8 27942803 27942803 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010906 exon17 c.C2053T p.R685W . . . TEX15 56154 broad.mit.edu 36 8 30825416 30825416 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031271 exon1 c.T660C p.F220F . . . CSMD1 64478 broad.mit.edu 36 8 3214298 3214298 + Silent SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033225 exon19 c.T2785A p.S929T . . . PXDNL 137902 broad.mit.edu 36 8 52421027 52421027 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144651 exon20 c.C3935T p.T1312M . . . PLAG1 5324 broad.mit.edu 36 8 57243340 57243340 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114634 exon3 c.A43G p.T15A . . . ANGPT2 285 broad.mit.edu 36 8 6359667 6359667 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001118888 exon5 c.T815A p.I272N . . . LACTB2 51110 broad.mit.edu 36 8 71736551 71736551 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016027 exon2 c.A258G p.I86M . . . ZFHX4 79776 broad.mit.edu 36 8 77929961 77929961 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon10 c.C8249A p.S2750Y . . . FABP4 2167 broad.mit.edu 36 8 82555353 82555353 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001442 exon2 c.G109A p.A37T . . . ATP6V0D2 245972 broad.mit.edu 36 8 87195225 87195225 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152565 exon2 c.C302T p.T101M . . . SLC26A7 115111 broad.mit.edu 36 8 92470842 92470842 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_134266 exon16 c.G1776A p.E592E . . . CCNE2 9134 broad.mit.edu 36 8 95964276 95964276 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057749 exon10 c.A852G p.L284L . . . TNKS 8658 broad.mit.edu 36 8 9630361 9630361 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003747 exon17 c.G2598T p.Q866H . . . C8orf47 203111 broad.mit.edu 36 8 99171003 99171003 + Silent SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173549 exon2 c.T582C p.V194V . . . POP1 10940 broad.mit.edu 36 8 99209130 99209130 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145860 exon3 c.G274A p.E92K . . . ARHGEF10 9639 broad.mit.edu 36 8 1795596 1795596 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014629 exon4 c.320delC p.T107fs . . . TBC1D2 55357 broad.mit.edu 36 9 100010971 100010971 + Silent SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018421 exon9 c.C1950A p.G650G . . . GRIN3A 116443 broad.mit.edu 36 9 103375449 103375449 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133445 exon9 c.G3176A p.R1059Q . . . OR13F1 138805 broad.mit.edu 36 9 106306601 106306601 + Silent SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004485 exon1 c.T237A p.S79S . . . PALM2-AKAP2 445815 broad.mit.edu 36 9 111734076 111734076 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147150 exon6 c.G443A p.C148Y . . . SVEP1 79987 broad.mit.edu 36 9 112261187 112261187 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153366 exon19 c.G3350A p.R1117H . . . KIAA1958 158405 broad.mit.edu 36 9 114461463 114461463 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133465 exon4 c.C1444T p.R482C . . . HDHD3 81932 broad.mit.edu 36 9 115176433 115176433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031219 exon2 c.G23A p.R8Q . . . DFNB31 25861 broad.mit.edu 36 9 116225536 116225536 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015404 exon7 c.C1505T p.S502F . . . DAB2IP 153090 broad.mit.edu 36 9 123568654 123568654 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032552 exon9 c.C1437T p.R479R . . . ZBTB6 10773 broad.mit.edu 36 9 124713488 124713488 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006626 exon2 c.G685T p.G229C . . . NEK6 10783 broad.mit.edu 36 9 126129482 126129482 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166167 exon7 c.A613C p.K205Q . . . HSPA5 3309 broad.mit.edu 36 9 127041428 127041428 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005347 exon5 c.G609A p.T203T . . . GOLGA2 2801 broad.mit.edu 36 9 130068402 130068402 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004486 exon8 c.G585A p.T195T . . . SPTAN1 6709 broad.mit.edu 36 9 130384820 130384820 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195532 exon14 c.C1677T p.H559H . . . SPTAN1 6709 broad.mit.edu 36 9 130386416 130386416 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195532 exon17 c.A2228C p.Q743P . . . RAPGEF1 2889 broad.mit.edu 36 9 133449584 133449584 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198679 exon21 c.G2845T p.A949S . . . RAPGEF1 2889 broad.mit.edu 36 9 133487106 133487106 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198679 exon11 c.G1806T p.K602N . . . NTNG2 84628 broad.mit.edu 36 9 134063646 134063646 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032536 exon3 c.A686C p.N229T . . . SETX 23064 broad.mit.edu 36 9 134191885 134191885 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015046 exon10 c.G4921A p.V1641I . . . TSC1 7248 broad.mit.edu 36 9 134768952 134768952 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162426 exon17 c.G2112A p.E704E . . . SNAPC3 6619 broad.mit.edu 36 9 15423620 15423620 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039697 exon3 c.T463C p.F155L . . . SH3GL2 6456 broad.mit.edu 36 9 17737074 17737074 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003026 exon2 c.A56T p.E19V . . . ADAMTSL1 92949 broad.mit.edu 36 9 18629299 18629299 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052866 exon7 c.A724G p.S242G . . . DOCK8 81704 broad.mit.edu 36 9 301983 301983 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190458 exon5 c.C354T p.C118C . . . TOPORS 10210 broad.mit.edu 36 9 32533159 32533159 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195622 exon2 c.C1169T p.T390M . . . TAF1L 138474 broad.mit.edu 36 9 32622482 32622482 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153809 exon1 c.T3096C p.P1032P . . . TAF1L 138474 broad.mit.edu 36 9 32623671 32623671 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153809 exon1 c.G1907A p.R636H . . . C9orf23 138716 broad.mit.edu 36 9 34601288 34601288 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148178 exon2 c.G6A p.E2E . . . STOML2 30968 broad.mit.edu 36 9 35091491 35091491 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013442 exon6 c.C511T p.R171C . . . C9orf100 84904 broad.mit.edu 36 9 35653048 35653048 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032818 exon6 c.A568T p.T190S . . . GBA2 57704 broad.mit.edu 36 9 35729672 35729672 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020944 exon9 c.A1535G p.H512R . . . NPR2 4882 broad.mit.edu 36 9 35782722 35782722 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003995 exon1 c.C317T p.A106V . . . NPR2 4882 broad.mit.edu 36 9 35792771 35792771 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003995 exon12 c.C1858T p.R620C . . . TRPM3 80036 broad.mit.edu 36 9 72341749 72341749 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007471 exon25 c.G4064T p.S1355I . . . GNA14 9630 broad.mit.edu 36 9 79333849 79333849 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004297 exon2 c.G265A p.A89T . . . PTPRD 5789 broad.mit.edu 36 9 8394588 8394588 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040712 exon20 c.G2929A p.A977T . . . UBQLN1 29979 broad.mit.edu 36 9 85490855 85490855 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_053067 exon2 c.T216C p.H72H . . . MED27 9442 broad.mit.edu 36 9 133725801 133725801 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004269 exon8 c.881delC p.P294fs . . . CNTLN 54875 broad.mit.edu 36 9 17474353 17474353 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017738 exon24 c.3916delA p.K1306fs . . . JAK2 3717 broad.mit.edu 36 9 5062515 5062515 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004972 exon13 c.1665delT p.T555fs . . . ANKRD20A3 441425 broad.mit.edu 36 9 67556465 67556465 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001012419 exon14 c.1369delA p.K457fs . . . FGD3 89846 broad.mit.edu 36 9 94806130 94806130 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001083536 exon5 c.570delG p.A190fs . . . RGAG1 57529 broad.mit.edu 36 X 109584511 109584512 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020769 exon3 c.4010_4011insG p.M1337fs . . . EIF2S3 1968 broad.mit.edu 36 X 24001261 24001262 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001415 exon11 c.1315_1316insA p.E439fs . . . MSN 4478 broad.mit.edu 36 X 64871943 64871944 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002444 exon8 c.885_886insA p.R295fs . . . RPS6KA6 27330 broad.mit.edu 36 X 83257910 83257911 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014496 exon12 c.991_992insT p.A331fs . . . BEX5 340542 broad.mit.edu 36 X 101295781 101295781 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159560 exon3 c.T113G p.V38G . . . ESX1 80712 broad.mit.edu 36 X 103385646 103385646 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153448 exon2 c.C351T p.T117T . . . NRK 203447 broad.mit.edu 36 X 105048236 105048236 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198465 exon16 c.C2428T p.R810W . . . ATG4A 115201 broad.mit.edu 36 X 107263945 107263945 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178270 exon5 c.T295G p.W99G . . . LRCH2 57631 broad.mit.edu 36 X 114304582 114304582 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020871 exon11 c.T1376C p.L459P . . . CXorf61 203413 broad.mit.edu 36 X 115507089 115507089 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017978 exon2 c.T189C p.S63S . . . DOCK11 139818 broad.mit.edu 36 X 117602810 117602810 + Silent SNP A C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144658 exon15 c.A1680C p.S560S . . . FANCB 2187 broad.mit.edu 36 X 14773279 14773279 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018113 exon8 c.C1547A p.S516Y . . . IDH3G 3421 broad.mit.edu 36 X 152706592 152706592 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004135 exon7 c.C420T p.D140D . . . ASMT 438 broad.mit.edu 36 X 1721726 1721726 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171039 exon7 c.T716C p.L239P . . . RAI2 10742 broad.mit.edu 36 X 17728719 17728719 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172739 exon3 c.G1333T p.D445Y . . . PPEF1 5475 broad.mit.edu 36 X 18753819 18753819 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152226 exon17 c.C1509T p.Y503Y . . . SH3KBP1 30011 broad.mit.edu 36 X 19474015 19474015 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024666 exon14 c.G1458A p.A486A . . . PHEX 5251 broad.mit.edu 36 X 21961126 21961126 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000444 exon1 c.G82A p.G28S . . . PHEX 5251 broad.mit.edu 36 X 21975116 21975116 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000444 exon3 c.T215G p.L72R . . . FTHL17 53940 broad.mit.edu 36 X 30999963 30999963 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031894 exon1 c.G29A p.R10H . . . DMD 1756 broad.mit.edu 36 X 31424883 31424883 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004021 exon14 c.G1110A p.R370R . . . MXRA5 25878 broad.mit.edu 36 X 3248275 3248275 + Silent SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon5 c.C5451A p.S1817S . . . DMD 1756 broad.mit.edu 36 X 32493823 32493823 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004006 exon16 c.A1909G p.T637A . . . CXorf22 170063 broad.mit.edu 36 X 35917462 35917462 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152632 exon16 c.C2819T p.A940V . . . FAM47C 442444 broad.mit.edu 36 X 36938461 36938461 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013736 exon1 c.G2057A p.R686H . . . TSPAN7 7102 broad.mit.edu 36 X 38410481 38410481 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004615 exon2 c.C244T p.R82C . . . MID1IP1 58526 broad.mit.edu 36 X 38549197 38549197 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098791 exon2 c.G54A p.M18I . . . USP9X 8239 broad.mit.edu 36 X 40960383 40960383 + Silent SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039590 exon35 c.T5619G p.G1873G . . . ELK1 2002 broad.mit.edu 36 X 47381365 47381365 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005229 exon5 c.C1179T p.L393L . . . WDR13 64743 broad.mit.edu 36 X 48348250 48348250 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166426 exon8 c.G1068A p.K356K . . . GATA1 2623 broad.mit.edu 36 X 48535754 48535754 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002049 exon4 c.G679A p.A227T . . . OTUD5 55593 broad.mit.edu 36 X 48686417 48686417 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136157 exon2 c.C666T p.G222G . . . GRIPAP1 56850 broad.mit.edu 36 X 48732383 48732383 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020137 exon7 c.C541A p.P181T . . . CACNA1F 778 broad.mit.edu 36 X 48955661 48955661 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon34 c.G4027A p.V1343I . . . CACNA1F 778 broad.mit.edu 36 X 48971820 48971820 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon7 c.C851T p.A284V . . . AKAP4 8852 broad.mit.edu 36 X 49844947 49844947 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003886 exon5 c.G1157A p.C386Y . . . MAGED1 9500 broad.mit.edu 36 X 51656782 51656782 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006986 exon4 c.G1291A p.A431T . . . HSD17B10 3028 broad.mit.edu 36 X 53476063 53476063 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037811 exon3 c.C214T p.Q72X . . . HUWE1 10075 broad.mit.edu 36 X 53633470 53633470 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031407 exon36 c.G4223T p.R1408L . . . ITIH5L 347365 broad.mit.edu 36 X 54800504 54800504 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198510 exon8 c.A2728C p.S910R . . . PFKFB1 5207 broad.mit.edu 36 X 54988620 54988620 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002625 exon10 c.C1075T p.R359C . . . ZXDA 7789 broad.mit.edu 36 X 57951888 57951888 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007156 exon1 c.G1692T p.M564I . . . ARHGEF9 23229 broad.mit.edu 36 X 62792269 62792269 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173480 exon7 c.A824G p.E275G . . . ZC3H12B 340554 broad.mit.edu 36 X 64638460 64638460 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010888 exon5 c.G1157A p.R386H . . . AR 367 broad.mit.edu 36 X 66682520 66682520 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000044 exon1 c.C807T p.Y269Y . . . RAB41 347517 broad.mit.edu 36 X 69420593 69420593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032726 exon6 c.C521T p.A174V . . . DLG3 1741 broad.mit.edu 36 X 69586851 69586851 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021120 exon5 c.C811T p.R271C . . . ZMYM3 9203 broad.mit.edu 36 X 70381412 70381412 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171162 exon19 c.C3028T p.P1010S . . . OGT 8473 broad.mit.edu 36 X 70694228 70694228 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181673 exon12 c.G1553A p.G518D . . . PIN4 5303 broad.mit.edu 36 X 71333449 71333449 + Silent SNP A G G novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170747 exon3 c.A282G p.A94A . . . SATL1 340562 broad.mit.edu 36 X 84249350 84249350 + Silent SNP C T T novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012980 exon1 c.G1281A p.R427R . . . DIAPH2 1730 broad.mit.edu 36 X 96099572 96099572 + Silent SNP G A A novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006729 exon16 c.G1704A p.A568A . . . MAP7D2 256714 broad.mit.edu 36 X 19953728 19953728 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168465 exon9 c.1271delA p.N424fs . . . ZFX 7543 broad.mit.edu 36 X 24138531 24138531 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178086 exon6 c.848delA p.E283fs . . . TAB3 257397 broad.mit.edu 36 X 30771055 30771055 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3966-01A-01W-1073-09 TCGA-AA-3966-10A-01W-1073-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152787 exon9 c.1837delT p.Y613fs . . .