Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ADRB1	153	broad.mit.edu	36	10	115794622	115794623	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000684	exon1	c.741_742insT	p.V247fs	.	.	.
FAM188A	80013	broad.mit.edu	36	10	15903682	15903682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024948	exon9	c.G780A	p.M260I	.	.	.
MLLT10	8028	broad.mit.edu	36	10	21863580	21863580	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195626	exon1	c.A1G	p.M1V	.	.	.
ZWINT	11130	broad.mit.edu	36	10	57788214	57788214	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007057	exon8	c.C805A	p.Q269K	.	.	.
GLUD1	2746	broad.mit.edu	36	10	88844315	88844315	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005271	exon1	c.C192T	p.P64P	.	.	.
CYP2C8	1558	broad.mit.edu	36	10	96817398	96817398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000770	exon2	c.G209A	p.G70D	.	.	.
ZNF214	7761	broad.mit.edu	36	11	6978929	6978929	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013249	exon3	c.G561A	p.Q187Q	.	.	.
BTBD11	121551	broad.mit.edu	36	12	106537953	106537953	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017523	exon9	c.G1124A	p.R375H	.	.	.
KRT3	3850	broad.mit.edu	36	12	51471304	51471304	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_057088	exon7	c.C1488T	p.D496D	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54374890	54374890	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001144997	exon15	c.A1856T	p.Q619L	.	.	.
SUOX	6821	broad.mit.edu	36	12	54684015	54684015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000456	exon6	c.G575A	p.R192Q	.	.	.
IFFO1	25900	broad.mit.edu	36	12	6534878	6534878	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193457	exon1	c.C579T	p.P193P	.	.	.
POSTN	10631	broad.mit.edu	36	13	37052705	37052705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001135934	exon11	c.C1522T	p.R508C	.	.	.
MRPS31	10240	broad.mit.edu	36	13	40243272	40243273	+	Translation_Start_Site	DNP	TC	GA	GA	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	TC	TC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005830	exon1	c.0_1TC	.	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83352596	83352596	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052910	exon1	c.A1048T	p.I350F	.	.	.
POTEG	404785	broad.mit.edu	36	14	18623707	18623707	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005356	exon1	c.G291C	p.K97N	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44564736	44564736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015091	exon8	c.G3239A	p.G1080E	.	.	.
CCDC88C	440193	broad.mit.edu	36	14	90814086	90814087	+	Missense_Mutation	DNP	GA	AT	AT	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080414	exon29	c.4990_4991AT	.	.	.	.
RYR3	6263	broad.mit.edu	36	15	31900829	31900829	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001036	exon79	c.G10882T	p.E3628X	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40530192	40530192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022473	exon2	c.C1501T	p.P501S	.	.	.
HERC1	8925	broad.mit.edu	36	15	61833779	61833779	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003922	exon7	c.G1752T	p.W584C	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76273367	76273367	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199377	exon4	c.G492A	p.P164P	.	.	.
SHC4	399694	broad.mit.edu	36	15	46905469	46905469	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203349	exon12	c.1884delC	p.S628fs	.	.	.
NCRNA00052	145978	broad.mit.edu	36	15	85922561	85922562	+	Frame_Shift_Del	DEL	CA	-	-	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ATF7IP2	80063	broad.mit.edu	36	16	10441749	10441749	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024997	exon5	c.A1123G	p.I375V	.	.	.
ABCA3	21	broad.mit.edu	36	16	2285598	2285598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001089	exon18	c.C2408T	p.T803M	.	.	.
ATXN2L	11273	broad.mit.edu	36	16	28749456	28749456	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_148415	exon9	c.C1054T	p.L352L	.	.	.
CD2BP2	10421	broad.mit.edu	36	16	30272790	30272790	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006110	exon4	c.C308A	p.A103D	.	.	.
FN3KRP	79672	broad.mit.edu	36	17	78267979	78267980	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024619	exon1	c.59_60insG	p.S20fs	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11969382	11969382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003010	exon8	c.G860A	p.R287H	.	.	.
SMG6	23293	broad.mit.edu	36	17	2142936	2142936	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001170957	exon5	c.C2144T	p.A715V	.	.	.
THEG	51298	broad.mit.edu	36	19	326839	326839	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199202	exon1	c.C132T	p.D44D	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59838540	59838540	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081639	exon12	c.T1578C	p.D526D	.	.	.
CLEC4M	10332	broad.mit.edu	36	19	7736936	7736937	+	Missense_Mutation	DNP	GG	CC	CC	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001144904	exon4	c.474_475CC	.	.	.	.
PRPF31	26121	broad.mit.edu	36	19	59326588	59326589	+	Frame_Shift_Del	DEL	GG	-	-	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015629	exon14	c.1413_1414del	p.471_472del	.	.	.
RPRD2	23248	broad.mit.edu	36	1	148648100	148648101	+	De_novo_Start_OutOfFrame	INS	-	TA	TA	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZNF687	57592	broad.mit.edu	36	1	149526677	149526677	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020832	exon2	c.G1286A	p.G429E	.	.	.
FLG	2312	broad.mit.edu	36	1	150545642	150545642	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002016	exon3	c.G8344A	p.G2782S	.	.	.
CRNN	49860	broad.mit.edu	36	1	150649842	150649842	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016190	exon3	c.G340A	p.G114S	.	.	.
EPHA2	1969	broad.mit.edu	36	1	16349990	16349990	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004431	exon2	c.G141A	p.P47P	.	.	.
C1orf125	126859	broad.mit.edu	36	1	177745086	177745086	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144696	exon21	c.T2421C	p.S807S	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180007929	180007929	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000721	exon37	c.G5078A	p.R1693H	.	.	.
NAV1	89796	broad.mit.edu	36	1	200016922	200016922	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001167738	exon3	c.G352A	p.D118N	.	.	.
USH2A	7399	broad.mit.edu	36	1	214107076	214107076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_206933	exon44	c.G8741A	p.R2914Q	.	.	.
FOXJ3	22887	broad.mit.edu	36	1	42420239	42420239	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001198851	exon14	c.G1689A	p.V563V	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10621728	10621733	+	In_Frame_Del	DEL	TCGTCG	-	-	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	TCGTCG	TCGTCG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079843	exon21	c.5133_5138del	p.1711_1713del	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13778200	13778200	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_025229	exon20	c.C1998A	p.H666Q	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57262514	57262514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178457	exon5	c.C4355T	p.A1452V	.	.	.
COL20A1	57642	broad.mit.edu	36	20	61430234	61430234	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020882	exon34	c.C3720T	p.P1240P	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40307011	40307011	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001389	exon33	c.C5859T	p.S1953S	.	.	.
RIPK4	54101	broad.mit.edu	36	21	42037243	42037243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020639	exon7	c.C1063T	p.R355C	.	.	.
SCUBE1	80274	broad.mit.edu	36	22	41947173	41947173	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173050	exon13	c.G1499A	p.R500Q	.	.	.
NEB	4703	broad.mit.edu	36	2	152050683	152050683	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001164507	exon182	c.G25415A	p.R8472H	.	.	.
SESTD1	91404	broad.mit.edu	36	2	179685703	179685703	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178123	exon17	c.C1954G	p.P652A	.	.	.
ZNF385B	151126	broad.mit.edu	36	2	180017868	180017868	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001113397	exon7	c.C949T	p.R317W	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124150162	124150162	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001031702	exon3	c.T209C	p.L70S	.	.	.
SLC41A3	54946	broad.mit.edu	36	3	127208650	127208650	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008485	exon11	c.C1363A	p.L455I	.	.	.
CP	1356	broad.mit.edu	36	3	150422213	150422213	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000096	exon1	c.G57A	p.A19A	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184542039	184542039	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015078	exon4	c.T349C	p.S117P	.	.	.
GRM2	2912	broad.mit.edu	36	3	51724982	51724982	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130063	exon2	c.299delC	p.T100fs	.	.	.
ARHGEF38	54848	broad.mit.edu	36	4	106771616	106771617	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017700	exon4	c.621_622insA	p.L207fs	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54835811	54835811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006206	exon12	c.C1700T	p.P567L	 PDGFRA,central_nervous_system,brain,Substitution - coding silent,-1 	.	.
UGT2A1	10941	broad.mit.edu	36	4	70489821	70489821	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006798	exon6	c.T1442G	p.L481R	.	.	.
APC	324	broad.mit.edu	36	5	112144491	112144491	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon5	c.C667T	p.R223X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
CDC23	8697	broad.mit.edu	36	5	137570156	137570156	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004661	exon3	c.G351C	p.L117L	.	.	.
GRM6	2916	broad.mit.edu	36	5	178345796	178345796	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000843	exon8	c.C2065A	p.P689T	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179676375	179676375	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005110	exon12	c.G1147A	p.V383M	.	.	.
UGT3A1	133688	broad.mit.edu	36	5	35990208	35990208	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152404	exon7	c.C1425T	p.A475A	.	.	.
ITGA2	3673	broad.mit.edu	36	5	52415034	52415034	+	Missense_Mutation	SNP	C	A	A	rs2303122	byCluster;byFrequency;bySubmitter;byHapMap;by1000genomes	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002203	exon27	c.C3252A	p.F1084L	.	.	.
PDE4D	5144	broad.mit.edu	36	5	59224995	59224995	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001104631	exon1	c.212delG	p.C71fs	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101201255	101201255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006828	exon22	c.G3590A	p.R1197Q	.	.	.
TFAP2A	7020	broad.mit.edu	36	6	10515049	10515049	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003220	exon3	c.G495C	p.P165P	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12239025	12239025	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002114	exon6	c.G6249A	p.R2083R	.	.	.
VARS2	57176	broad.mit.edu	36	6	30990983	30990983	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020442	exon3	c.T273A	p.G91G	.	.	.
C6orf221	154288	broad.mit.edu	36	6	74130084	74130084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001017361	exon3	c.C434T	p.T145M	.	.	.
MYO6	4646	broad.mit.edu	36	6	76633374	76633374	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004999	exon18	c.G1776A	p.Q592Q	.	.	.
CREB3L2	64764	broad.mit.edu	36	7	137336989	137336989	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194071	exon1	c.G3A	p.M1I	.	.	.
ZC3HAV1	56829	broad.mit.edu	36	7	138390539	138390539	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020119	exon10	c.C2139T	p.T713T	.	.	.
MGAM	8972	broad.mit.edu	36	7	141401118	141401118	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004668	exon27	c.G3255C	p.V1085V	.	.	.
ZNF862	643641	broad.mit.edu	36	7	149192222	149192222	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099220	exon8	c.G3426A	p.A1142A	.	.	.
C7orf47	221908	broad.mit.edu	36	7	99871015	99871015	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145030	exon4	c.C666T	p.T222T	.	.	.
NSUN5P2	260294	broad.mit.edu	36	7	72058384	72058384	+	Missense_Mutation	SNP	C	G	G	rs400282	byCluster;by2Hit2Allele	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GRHL2	79977	broad.mit.edu	36	8	102680534	102680534	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024915	exon8	c.G1077A	p.W359X	.	.	.
RAD54B	25788	broad.mit.edu	36	8	95480902	95480902	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012415	exon8	c.G1294T	p.E432X	.	.	.
TBC1D2	55357	broad.mit.edu	36	9	100003656	100003656	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018421	exon11	c.G2383A	p.V795M	.	.	.
CEP110	11064	broad.mit.edu	36	9	122892487	122892487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007018	exon2	c.G331A	p.G111S	.	.	.
DDX58	23586	broad.mit.edu	36	9	32470268	32470268	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014314	exon12	c.C1723T	p.R575X	.	.	.
KIAA1161	57462	broad.mit.edu	36	9	34361826	34361826	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020702	exon2	c.C1116T	p.N372N	.	.	.
TLN1	7094	broad.mit.edu	36	9	35694339	35694339	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006289	exon45	c.G6037A	p.A2013T	.	.	.
F8	2157	broad.mit.edu	36	X	153810521	153810521	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000132	exon14	c.C4738G	p.L1580V	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	90977683	90977683	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3952-01A-01W-0995-10	TCGA-AA-3952-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032968	exon1	c.A524T	p.N175I	.	.	.