Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target PSD 5662 broad.mit.edu 36 10 104164948 104164949 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002779 exon4 c.786_787insC p.P262fs . . . LOXL4 84171 broad.mit.edu 36 10 100007898 100007898 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032211 exon7 c.G935A p.R312H . . . BTRC 8945 broad.mit.edu 36 10 103282163 103282163 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003939 exon7 c.G854A p.R285Q . . . LDB1 8861 broad.mit.edu 36 10 103858019 103858019 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113407 exon11 c.G1057A p.E353K . . . C10orf79 80217 broad.mit.edu 36 10 105980450 105980450 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025145 exon2 c.C207T p.G69G . . . ADD3 120 broad.mit.edu 36 10 111883220 111883220 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019903 exon14 c.G1879A p.E627K . . . ACSL5 51703 broad.mit.edu 36 10 114172188 114172188 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016234 exon17 c.C1760T p.P587L . . . GFRA1 2674 broad.mit.edu 36 10 117843265 117843265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145453 exon7 c.G938A p.S313N . . . WDR11 55717 broad.mit.edu 36 10 122609669 122609669 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018117 exon4 c.G411A p.P137P . . . WDR11 55717 broad.mit.edu 36 10 122652701 122652701 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018117 exon23 c.C2898T p.C966C . . . ADARB2 105 broad.mit.edu 36 10 1235981 1235981 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018702 exon8 c.C1789T p.R597C . . . DMBT1 1755 broad.mit.edu 36 10 124321821 124321821 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007329 exon5 c.T189C p.G63G . . . LHPP 64077 broad.mit.edu 36 10 126195803 126195803 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022126 exon6 c.C689T p.A230V . . . C10orf90 118611 broad.mit.edu 36 10 128183303 128183303 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004298 exon3 c.C456T p.R152R . . . C10orf90 118611 broad.mit.edu 36 10 128183365 128183365 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004298 exon3 c.G394T p.G132C . . . MKI67 4288 broad.mit.edu 36 10 129803829 129803829 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002417 exon7 c.A833G p.D278G . . . DCLRE1C 64421 broad.mit.edu 36 10 15016525 15016525 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033855 exon8 c.G538A p.E180K . . . ITGA8 8516 broad.mit.edu 36 10 15737381 15737381 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003638 exon11 c.G979A p.V327I . . . CUBN 8029 broad.mit.edu 36 10 17032058 17032058 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081 exon34 c.A5028G p.A1676A . . . MLLT10 8028 broad.mit.edu 36 10 22061987 22061987 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195626 exon17 c.C2372T p.P791L . . . KIAA1217 56243 broad.mit.edu 36 10 24802242 24802242 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019590 exon6 c.C926T p.A309V . . . ARHGAP21 57584 broad.mit.edu 36 10 25050827 25050827 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020824 exon2 c.C8T p.A3V . . . MYO3A 53904 broad.mit.edu 36 10 26350582 26350582 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon8 c.A730T p.R244W . . . MYO3A 53904 broad.mit.edu 36 10 26502715 26502715 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon30 c.A3516C p.E1172D . . . MYO3A 53904 broad.mit.edu 36 10 26540813 26540813 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017433 exon35 c.A4766C p.E1589A . . . YME1L1 10730 broad.mit.edu 36 10 27445169 27445169 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014263 exon16 c.G1831A p.D611N . . . ZMYND11 10771 broad.mit.edu 36 10 277975 277975 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212479 exon10 c.G843A p.E281E . . . BAMBI 25805 broad.mit.edu 36 10 29010372 29010372 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012342 exon2 c.C256T p.R86X . . . KIAA1462 57608 broad.mit.edu 36 10 30356773 30356773 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020848 exon3 c.C2310T p.S770S . . . KIAA1462 57608 broad.mit.edu 36 10 30357980 30357980 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020848 exon3 c.G1103T p.G368V . . . MAP3K8 1326 broad.mit.edu 36 10 30779394 30779394 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005204 exon5 c.C706T p.H236Y . . . CREM 1390 broad.mit.edu 36 10 35477375 35477375 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181571 exon3 c.G118A p.A40T . . . RET 5979 broad.mit.edu 36 10 42927561 42927561 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020975 exon8 c.G1531A p.E511K . . . MARCH8 220972 broad.mit.edu 36 10 45274691 45274691 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002266 exon6 c.C454T p.R152C . . . RBP3 5949 broad.mit.edu 36 10 48002206 48002206 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002900 exon4 c.C3449T p.T1150I . . . C10orf72 196740 broad.mit.edu 36 10 49985726 49985726 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144984 exon2 c.G376A p.V126I . . . CHAT 1103 broad.mit.edu 36 10 50527597 50527597 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142929 exon10 c.G1066A p.V356I . . . CHAT 1103 broad.mit.edu 36 10 50533182 50533182 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142929 exon12 c.C1316T p.A439V . . . DKK1 22943 broad.mit.edu 36 10 53744321 53744321 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012242 exon1 c.G121A p.A41T . . . CCDC6 8030 broad.mit.edu 36 10 61222839 61222839 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005436 exon9 c.T1267A p.F423I . . . MYPN 84665 broad.mit.edu 36 10 69551215 69551215 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032578 exon2 c.G14T p.S5I . . . HKDC1 80201 broad.mit.edu 36 10 70657025 70657025 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025130 exon2 c.G120T p.M40I . . . SGPL1 8879 broad.mit.edu 36 10 72299622 72299622 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003901 exon9 c.C772T p.R258W . . . UNC5B 219699 broad.mit.edu 36 10 72721369 72721369 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170744 exon10 c.C1469T p.T490M . . . UNC5B 219699 broad.mit.edu 36 10 72729025 72729025 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170744 exon17 c.C2823T p.T941T . . . CAMK2G 818 broad.mit.edu 36 10 75244955 75244955 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172169 exon20 c.G1408A p.V470M . . . PLAU 5328 broad.mit.edu 36 10 75346255 75346255 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002658 exon11 c.G1222A p.V408I . . . ITIH5 80760 broad.mit.edu 36 10 7719290 7719290 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030569 exon5 c.G559A p.V187M . . . MMRN2 79812 broad.mit.edu 36 10 88693572 88693572 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024756 exon6 c.G949A p.A317T . . . GLUD1 2746 broad.mit.edu 36 10 88808939 88808939 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005271 exon10 c.C1350T p.S450S . . . ACTA2 59 broad.mit.edu 36 10 90693576 90693576 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001141945 exon4 c.G327T p.E109D . . . IFIT1 3434 broad.mit.edu 36 10 91152409 91152409 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001548 exon2 c.C397T p.R133C . . . KIF20B 9585 broad.mit.edu 36 10 91468533 91468533 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016195 exon12 c.T1358C p.I453T . . . IDE 3416 broad.mit.edu 36 10 94204226 94204226 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004969 exon25 c.T3015C p.F1005F . . . TBC1D12 23232 broad.mit.edu 36 10 96259839 96259839 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015188 exon8 c.T1602C p.G534G . . . CYP2C9 1559 broad.mit.edu 36 10 96698905 96698905 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000771 exon5 c.C693A p.N231K . . . ALDH18A1 5832 broad.mit.edu 36 10 97387105 97387105 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017423 exon4 c.C382T p.R128C . . . BLNK 29760 broad.mit.edu 36 10 97959586 97959586 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013314 exon9 c.C744T p.A248A . . . MMS19 64210 broad.mit.edu 36 10 99210675 99210675 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022362 exon24 c.G2391T p.Q797H . . . TAF5 6877 broad.mit.edu 36 10 105129358 105129358 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006951 exon4 c.1117delT p.F373fs . . . ENKUR 219670 broad.mit.edu 36 10 25324669 25324669 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145010 exon3 c.359delA p.K120fs . . . MTPAP 55149 broad.mit.edu 36 10 30651384 30651384 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018109 exon6 c.1161delT p.F387fs . . . NDST2 8509 broad.mit.edu 36 10 75237581 75237581 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003635 exon3 c.572delT p.L191fs . . . ATAD1 84896 broad.mit.edu 36 10 89564193 89564193 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032810 exon2 c.144delA p.K48fs . . . RUFY2 55680 broad.mit.edu 36 10 69806614 69806614 + Splice_Site SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . OR8I2 120586 broad.mit.edu 36 11 55617883 55617884 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003750 exon1 c.524_525insT p.H175fs . . . MUC6 4588 broad.mit.edu 36 11 1009473 1009473 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005961 exon30 c.G3832A p.V1278I . . . ANGPTL5 253935 broad.mit.edu 36 11 101267379 101267379 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178127 exon9 c.C1008G p.N336K . . . BIRC2 329 broad.mit.edu 36 11 101726869 101726869 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166 exon3 c.C980T p.A327V . . . MRVI1 10335 broad.mit.edu 36 11 10607750 10607750 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100163 exon5 c.C212T p.A71V . . . EIF4G2 1982 broad.mit.edu 36 11 10777858 10777858 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001418 exon19 c.G2141A p.R714H . . . TTC12 54970 broad.mit.edu 36 11 112705890 112705890 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017868 exon7 c.G483T p.V161V . . . ANKK1 255239 broad.mit.edu 36 11 112771319 112771319 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178510 exon4 c.A661G p.T221A . . . FAM55D 54827 broad.mit.edu 36 11 113956100 113956100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017678 exon5 c.C211T p.R71C . . . FAM55D 54827 broad.mit.edu 36 11 113958809 113958809 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077639 exon3 c.C241A p.Q81K . . . SIK3 23387 broad.mit.edu 36 11 116251328 116251328 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025164 exon10 c.T1115C p.L372P . . . DSCAML1 57453 broad.mit.edu 36 11 116813094 116813094 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon26 c.C4854A p.G1618G . . . PHLDB1 23187 broad.mit.edu 36 11 118003410 118003410 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144758 exon6 c.C661T p.P221S . . . DDX6 1656 broad.mit.edu 36 11 118162074 118162074 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004397 exon2 c.G97T p.G33X . . . VPS11 55823 broad.mit.edu 36 11 118454219 118454219 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021729 exon11 c.C1887T p.C629C . . . HINFP 25988 broad.mit.edu 36 11 118508873 118508873 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015517 exon9 c.G965A p.S322N . . . PVRL1 5818 broad.mit.edu 36 11 119040799 119040799 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002855 exon6 c.C1422T p.A474A . . . GRIK4 2900 broad.mit.edu 36 11 120251081 120251081 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014619 exon9 c.C1083T p.G361G . . . TECTA 7007 broad.mit.edu 36 11 120521849 120521849 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005422 exon11 c.C3919A p.Q1307K . . . MICAL2 9645 broad.mit.edu 36 11 12191518 12191518 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014632 exon7 c.C832A p.L278I . . . MICAL2 9645 broad.mit.edu 36 11 12204431 12204431 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014632 exon14 c.G1826A p.S609N . . . OR10G9 219870 broad.mit.edu 36 11 123399077 123399077 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001953 exon1 c.G148A p.D50N . . . VWA5A 4013 broad.mit.edu 36 11 123517609 123517609 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014622 exon15 c.C1974T p.D658D . . . PRDM10 56980 broad.mit.edu 36 11 129292237 129292237 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020228 exon16 c.G2332A p.D778N . . . IGSF9B 22997 broad.mit.edu 36 11 133296377 133296377 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014987 exon18 c.C2453T p.S818L . . . IGSF9B 22997 broad.mit.edu 36 11 133321338 133321338 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014987 exon2 c.C90T p.P30P . . . NCAPD3 23310 broad.mit.edu 36 11 133579181 133579181 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015261 exon10 c.C1185A p.A395A . . . GLB1L2 89944 broad.mit.edu 36 11 133746889 133746889 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138342 exon15 c.C1462T p.R488C . . . INSC 387755 broad.mit.edu 36 11 15168839 15168839 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042536 exon6 c.T596A p.I199N . . . KRTAP5-3 387266 broad.mit.edu 36 11 1585829 1585829 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012708 exon1 c.C363T p.C121C . . . PLEKHA7 144100 broad.mit.edu 36 11 16804632 16804632 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175058 exon10 c.C954T p.P318P . . . NAV2 89797 broad.mit.edu 36 11 19962293 19962293 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111018 exon11 c.C2500T p.R834W . . . NELL1 4745 broad.mit.edu 36 11 20906599 20906599 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006157 exon9 c.G995A p.R332Q . . . MUC15 143662 broad.mit.edu 36 11 26543678 26543678 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135092 exon3 c.C385A p.P129T . . . KIF18A 81930 broad.mit.edu 36 11 28014576 28014576 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031217 exon14 c.A2160G p.V720V . . . CARS 833 broad.mit.edu 36 11 2984742 2984742 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014437 exon19 c.G2092A p.D698N . . . KCNA4 3739 broad.mit.edu 36 11 29989203 29989203 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002233 exon2 c.C1599A p.I533I . . . MRGPRE 116534 broad.mit.edu 36 11 3206403 3206403 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039165 exon2 c.C200T p.A67V . . . ELF5 2001 broad.mit.edu 36 11 34483823 34483823 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001422 exon2 c.G50A p.C17Y . . . NUP98 4928 broad.mit.edu 36 11 3697254 3697254 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005387 exon18 c.A2414T p.D805V . . . NUP98 4928 broad.mit.edu 36 11 3702968 3702968 + Silent SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005387 exon15 c.T1839G p.P613P . . . STIM1 6786 broad.mit.edu 36 11 4061304 4061304 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003156 exon10 c.T1474C p.S492P . . . TRIM68 55128 broad.mit.edu 36 11 4578394 4578394 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018073 exon7 c.G1146T p.K382N . . . MAPK8IP1 9479 broad.mit.edu 36 11 45881041 45881041 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005456 exon5 c.C1147T p.L383L . . . PHF21A 51317 broad.mit.edu 36 11 45912270 45912270 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101802 exon18 c.G1868A p.R623H . . . CKAP5 9793 broad.mit.edu 36 11 46775031 46775031 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008938 exon12 c.C1374T p.A458A . . . LRP4 4038 broad.mit.edu 36 11 46877625 46877625 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002334 exon5 c.C436T p.R146C . . . ARFGAP2 84364 broad.mit.edu 36 11 47151606 47151606 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032389 exon7 c.C566T p.P189L . . . NUP160 23279 broad.mit.edu 36 11 47793763 47793763 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015231 exon13 c.A1530G p.V510V . . . OR51A7 119687 broad.mit.edu 36 11 4885655 4885655 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004749 exon1 c.C480A p.P160P . . . OR52A1 23538 broad.mit.edu 36 11 5129696 5129696 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012375 exon1 c.A480G p.P160P . . . OR51V1 283111 broad.mit.edu 36 11 5178330 5178330 + Nonsense_Mutation SNP C T T rs61738413 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004760 exon1 c.G177A p.W59X . . . HBG1 3047 broad.mit.edu 36 11 5227213 5227213 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000559 exon2 c.G276A p.L92L . . . HBG2 3048 broad.mit.edu 36 11 5232137 5232137 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000184 exon2 c.G276A p.L92L . . . UBQLNL 143630 broad.mit.edu 36 11 5493321 5493321 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145053 exon1 c.A927G p.S309S . . . OR5D14 219436 broad.mit.edu 36 11 55320197 55320197 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004735 exon1 c.C590A p.P197H . . . OR5W2 390148 broad.mit.edu 36 11 55437967 55437967 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001960 exon1 c.T668C p.L223P . . . OR5AK2 390181 broad.mit.edu 36 11 56513020 56513020 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005323 exon1 c.C56T p.A19V . . . OR6Q1 219952 broad.mit.edu 36 11 57555575 57555575 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005186 exon1 c.C575T p.S192L . . . OR1S2 219958 broad.mit.edu 36 11 57728179 57728179 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004459 exon1 c.A51C p.E17D . . . STX3 6809 broad.mit.edu 36 11 59312932 59312932 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178040 exon4 c.T225C p.D75D . . . ZP1 22917 broad.mit.edu 36 11 60397798 60397798 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207341 exon9 c.G1546T p.G516C . . . TMEM109 79073 broad.mit.edu 36 11 60446034 60446034 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024092 exon4 c.C553T p.R185W . . . DAGLA 747 broad.mit.edu 36 11 61261283 61261283 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006133 exon14 c.G1425A p.A475A . . . C11orf9 745 broad.mit.edu 36 11 61303898 61303898 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013279 exon17 c.C2229T p.S743S . . . AHNAK 79026 broad.mit.edu 36 11 62042645 62042645 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.G15820A p.E5274K . . . AHNAK 79026 broad.mit.edu 36 11 62049432 62049432 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.G9033T p.V3011V . . . AHNAK 79026 broad.mit.edu 36 11 62055673 62055673 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001620 exon5 c.G2792A p.G931D . . . TAF6L 10629 broad.mit.edu 36 11 62310597 62310597 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006473 exon11 c.C1122A p.A374A . . . FLRT1 23769 broad.mit.edu 36 11 63641526 63641526 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013280 exon2 c.C1211T p.T404M . . . SMPD1 6609 broad.mit.edu 36 11 6372321 6372321 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007593 exon6 c.C1801T p.R601C . . . RASGRP2 10235 broad.mit.edu 36 11 64266145 64266145 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098670 exon3 c.T89C p.V30A . . . PYGM 5837 broad.mit.edu 36 11 64281873 64281873 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164716 exon3 c.G350A p.G117D . . . SF1 7536 broad.mit.edu 36 11 64300569 64300569 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201998 exon2 c.G137A p.R46Q . . . NAALADL1 10004 broad.mit.edu 36 11 64569461 64569461 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005468 exon18 c.C2081T p.P694L . . . SLC25A45 283130 broad.mit.edu 36 11 64900543 64900543 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077241 exon6 c.C652T p.R218W . . . KAT5 10524 broad.mit.edu 36 11 65238762 65238762 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182710 exon7 c.G911A p.R304H . . . DNHD1 144132 broad.mit.edu 36 11 6548751 6548751 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144666 exon42 c.G13433A p.R4478Q . . . SLC29A2 3177 broad.mit.edu 36 11 65890265 65890265 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001532 exon9 c.C881T p.A294V . . . DCHS1 8642 broad.mit.edu 36 11 6604992 6604992 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003737 exon14 c.G5854A p.D1952N . . . CTSF 8722 broad.mit.edu 36 11 66089758 66089758 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003793 exon8 c.C1005T p.G335G . . . GPR152 390212 broad.mit.edu 36 11 66975741 66975741 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206997 exon1 c.C1031T p.P344L . . . LRP5 4041 broad.mit.edu 36 11 67910548 67910548 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002335 exon6 c.C1204A p.L402M . . . PPP6R3 55291 broad.mit.edu 36 11 68088385 68088385 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164164 exon10 c.G884T p.S295I . . . SHANK2 22941 broad.mit.edu 36 11 70010311 70010311 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133266 exon10 c.A1971C p.K657N . . . INPPL1 3636 broad.mit.edu 36 11 71619821 71619821 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001567 exon12 c.C1437T p.R479R . . . C11orf30 56946 broad.mit.edu 36 11 75904888 75904888 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020193 exon11 c.C1568T p.A523V . . . PAK1 5058 broad.mit.edu 36 11 76724930 76724930 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002576 exon13 c.G1262T p.R421L . . . ODZ4 26011 broad.mit.edu 36 11 78076771 78076771 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098816 exon29 c.G5236T p.G1746C . . . ODZ4 26011 broad.mit.edu 36 11 78175591 78175591 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098816 exon16 c.G2365A p.A789T . . . STK33 65975 broad.mit.edu 36 11 8452888 8452888 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030906 exon3 c.C141A p.S47R . . . TMEM126B 55863 broad.mit.edu 36 11 85024397 85024397 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193537 exon5 c.C376T p.L126L . . . EED 8726 broad.mit.edu 36 11 85665822 85665822 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152991 exon10 c.G1119A p.W373X . . . ST5 6764 broad.mit.edu 36 11 8675754 8675754 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005418 exon20 c.C2946T p.D982D . . . CWC15 51503 broad.mit.edu 36 11 94344268 94344268 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016403 exon3 c.C163T p.R55C . . . ARHGAP42 143872 broad.mit.edu 36 11 100341674 100341674 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152432 exon17 c.1507delA p.K503fs . . . DLAT 1737 broad.mit.edu 36 11 111402187 111402187 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001931 exon2 c.335delA p.E112fs . . . DSCAML1 57453 broad.mit.edu 36 11 116804398 116804398 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020693 exon33 c.6198delC p.P2066fs . . . LSP1 4046 broad.mit.edu 36 11 1859362 1859362 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013253 exon3 c.130delC p.P44fs . . . FOLR3 2352 broad.mit.edu 36 11 71528299 71528299 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000804 exon5 c.512delG p.R171fs . . . ODZ4 26011 broad.mit.edu 36 11 78203000 78203000 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098816 exon13 c.1770delC p.P590fs . . . FAT3 120114 broad.mit.edu 36 11 92255949 92255949 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008781 exon23 c.12679delC p.P4227fs . . . PANX1 24145 broad.mit.edu 36 11 93502262 93502262 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015368 exon1 c.136delC p.P46fs . . . C11orf10 746 broad.mit.edu 36 11 61314651 61314651 + Splice_Site SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . C12orf48 55010 broad.mit.edu 36 12 101100501 101100501 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017915 exon9 c.G1229A p.R410H . . . ASCL1 429 broad.mit.edu 36 12 101876541 101876541 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004316 exon1 c.G389A p.R130H . . . STAB2 55576 broad.mit.edu 36 12 102538384 102538384 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017564 exon4 c.G340T p.G114C . . . HSP90B1 7184 broad.mit.edu 36 12 102850829 102850829 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003299 exon4 c.G390A p.E130E . . . NUAK1 9891 broad.mit.edu 36 12 104985232 104985232 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014840 exon7 c.G1464A p.S488S . . . SSH1 54434 broad.mit.edu 36 12 107725593 107725593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161331 exon7 c.G709A p.A237T . . . MYO1H 283446 broad.mit.edu 36 12 108315633 108315633 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001101421 exon2 c.G241A p.V81I . . . TCHP 84260 broad.mit.edu 36 12 108825306 108825306 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143852 exon2 c.G92A p.R31Q . . . TAS2R50 259296 broad.mit.edu 36 12 11029961 11029961 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176890 exon1 c.C766T p.R256W . . . SH2B3 10019 broad.mit.edu 36 12 110369999 110369999 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005475 exon7 c.G1393A p.V465I . . . ATXN2 6311 broad.mit.edu 36 12 110474597 110474597 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002973 exon5 c.C921T p.A307A . . . C12orf51 283450 broad.mit.edu 36 12 111106597 111106597 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001109662 exon60 c.C10040G p.P3347R . . . RBM19 9904 broad.mit.edu 36 12 112868654 112868654 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016196 exon12 c.C1417T p.L473F . . . CIT 11113 broad.mit.edu 36 12 118652761 118652761 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007174 exon26 c.G3282A p.K1094K . . . CCDC64 92558 broad.mit.edu 36 12 119012236 119012236 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207311 exon8 c.C1538T p.S513L . . . GCN1L1 10985 broad.mit.edu 36 12 119050054 119050054 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006836 exon58 c.C7998T p.D2666D . . . ZCCHC8 55596 broad.mit.edu 36 12 121551162 121551162 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017612 exon1 c.T179C p.I60T . . . HIP1R 9026 broad.mit.edu 36 12 121905618 121905618 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003959 exon10 c.G842A p.R281Q . . . ABCB9 23457 broad.mit.edu 36 12 121980544 121980544 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019624 exon11 c.C2039T p.T680I . . . LRP6 4040 broad.mit.edu 36 12 12208613 12208613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002336 exon9 c.G1913A p.R638Q . . . ATP6V0A2 23545 broad.mit.edu 36 12 122786074 122786074 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012463 exon8 c.C775T p.R259W . . . TMEM132D 121256 broad.mit.edu 36 12 128750425 128750425 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133448 exon2 c.T851G p.L284R . . . RIMBP2 23504 broad.mit.edu 36 12 129492428 129492428 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015347 exon8 c.A1371C p.K457N . . . SFSWAP 6433 broad.mit.edu 36 12 130807045 130807045 + Silent SNP G A A rs34225497 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004592 exon11 c.G1623A p.A541A . . . GALNT9 50614 broad.mit.edu 36 12 131249724 131249724 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122636 exon9 c.C1445T p.A482V . . . GOLGA3 2802 broad.mit.edu 36 12 131894882 131894882 + Silent SNP G A A rs7299219 byHapMap TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172557 exon5 c.C846T p.S282S . . . ATF7IP 55729 broad.mit.edu 36 12 14504949 14504949 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018179 exon9 c.T2412C p.T804T . . . ATF7IP 55729 broad.mit.edu 36 12 14542262 14542262 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018179 exon15 c.C3801A p.T1267T . . . GYS2 2998 broad.mit.edu 36 12 21604606 21604606 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021957 exon8 c.G1150A p.A384T . . . KIAA0528 9847 broad.mit.edu 36 12 22568824 22568824 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014802 exon6 c.G450A p.T150T . . . CACNA1C 775 broad.mit.edu 36 12 2484370 2484370 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129842 exon8 c.C1215T p.S405S . . . CACNA1C 775 broad.mit.edu 36 12 2492256 2492256 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129842 exon9 c.G1235T p.R412M . . . CACNA1C 775 broad.mit.edu 36 12 2631161 2631161 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129842 exon32 c.G4040A p.R1347Q . . . FAR2 55711 broad.mit.edu 36 12 29314696 29314696 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018099 exon2 c.C47T p.T16M . . . DENND5B 160518 broad.mit.edu 36 12 31491780 31491780 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144973 exon6 c.G1820A p.R607Q . . . KIF21A 55605 broad.mit.edu 36 12 38010321 38010321 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173465 exon22 c.C3222T p.S1074S . . . LRRK2 120892 broad.mit.edu 36 12 39045066 39045066 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198578 exon49 c.G7337A p.R2446H . . . PPHLN1 51535 broad.mit.edu 36 12 41078925 41078925 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201438 exon9 c.G627A p.A209A . . . ADAMTS20 80070 broad.mit.edu 36 12 42112497 42112497 + Silent SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025003 exon21 c.T2973G p.S991S . . . ADAMTS20 80070 broad.mit.edu 36 12 42231295 42231295 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025003 exon2 c.A137C p.E46A . . . AMIGO2 347902 broad.mit.edu 36 12 45758911 45758911 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181847 exon2 c.G142A p.A48T . . . PRKAG1 5571 broad.mit.edu 36 12 47685049 47685049 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002733 exon7 c.C375A p.S125S . . . KCNA1 3736 broad.mit.edu 36 12 4891024 4891024 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000217 exon2 c.C219T p.F73F . . . KCNA1 3736 broad.mit.edu 36 12 4891267 4891267 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000217 exon2 c.G462A p.W154X . . . SCN8A 6334 broad.mit.edu 36 12 50364340 50364340 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014191 exon3 c.A392G p.H131R . . . FIGNL2 401720 broad.mit.edu 36 12 50502318 50502318 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013690 exon1 c.C147T p.D49D . . . SP7 121340 broad.mit.edu 36 12 52009362 52009362 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152860 exon2 c.C131T p.T44I . . . HOXC12 3228 broad.mit.edu 36 12 52635035 52635035 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173860 exon1 c.C55T p.H19Y . . . OR9K2 441639 broad.mit.edu 36 12 53809988 53809988 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005243 exon1 c.T169G p.L57V . . . OR10P1 121130 broad.mit.edu 36 12 54317713 54317713 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206899 exon1 c.C771T p.S257S . . . ITGA7 3679 broad.mit.edu 36 12 54387637 54387637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144996 exon1 c.G97A p.A33T . . . STAT2 6773 broad.mit.edu 36 12 55036236 55036236 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198332 exon3 c.C232A p.P78T . . . TIMELESS 8914 broad.mit.edu 36 12 55111559 55111559 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003920 exon8 c.G784A p.A262T . . . AGAP2 116986 broad.mit.edu 36 12 56407589 56407589 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014770 exon16 c.C1833A p.I611I . . . AVIL 10677 broad.mit.edu 36 12 56486440 56486440 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006576 exon13 c.T1641C p.T547T . . . SRGAP1 57522 broad.mit.edu 36 12 62808140 62808140 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020762 exon21 c.G2773A p.D925N . . . HELB 92797 broad.mit.edu 36 12 65018106 65018106 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033647 exon13 c.T3221C p.I1074T . . . LAG3 3902 broad.mit.edu 36 12 6752679 6752679 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002286 exon2 c.C119T p.A40V . . . USP5 8078 broad.mit.edu 36 12 6840447 6840447 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003481 exon12 c.C1414A p.L472M . . . ENO2 2026 broad.mit.edu 36 12 6895932 6895932 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001975 exon3 c.G176A p.G59D . . . CD163 9332 broad.mit.edu 36 12 7527515 7527515 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203416 exon12 c.C2803T p.P935S . . . OSBPL8 114882 broad.mit.edu 36 12 75315755 75315755 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020841 exon8 c.G522A p.G174G . . . SLC6A15 55117 broad.mit.edu 36 12 83784970 83784970 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182767 exon10 c.T1629C p.A543A . . . SLC6A15 55117 broad.mit.edu 36 12 83794470 83794470 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182767 exon6 c.C804T p.F268F . . . LRRIQ1 84125 broad.mit.edu 36 12 84042082 84042082 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032165 exon17 c.A3661T p.T1221S . . . ATP2B1 490 broad.mit.edu 36 12 88539508 88539508 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001323 exon9 c.C1536A p.S512S . . . KERA 11081 broad.mit.edu 36 12 89974101 89974101 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007035 exon2 c.A89G p.H30R . . . EEA1 8411 broad.mit.edu 36 12 91694816 91694816 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003566 exon28 c.G4048A p.A1350T . . . TMCC3 57458 broad.mit.edu 36 12 93500195 93500195 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020698 exon2 c.G329A p.R110H . . . FGD6 55785 broad.mit.edu 36 12 94128906 94128906 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018351 exon2 c.T285C p.C95C . . . NR1H4 9971 broad.mit.edu 36 12 99428748 99428748 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005123 exon4 c.G141A p.S47S . . . MYO1H 283446 broad.mit.edu 36 12 108343178 108343178 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001101421 exon15 c.1559delA p.E520fs . . . GIT2 9815 broad.mit.edu 36 12 108913912 108913912 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135214 exon2 c.89delT p.L30fs . . . PLEKHA5 54477 broad.mit.edu 36 12 19405785 19405785 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019012 exon23 c.2988delA p.L996fs . . . GXYLT1 283464 broad.mit.edu 36 12 40767953 40767953 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173601 exon8 c.1225delA p.T409fs . . . OR6C65 403282 broad.mit.edu 36 12 54080877 54080877 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005518 exon1 c.298delT p.F100fs . . . ERCC5 2073 broad.mit.edu 36 13 102326098 102326098 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000123 exon15 c.A3405G p.E1135E . . . MCF2L 23263 broad.mit.edu 36 13 112772385 112772385 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024979 exon9 c.A905G p.Q302R . . . ATP4B 496 broad.mit.edu 36 13 113355231 113355231 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000705 exon4 c.C513T p.G171G . . . TPTE2 93492 broad.mit.edu 36 13 18922243 18922243 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001141968 exon12 c.G613A p.V205I . . . ZDHHC20 253832 broad.mit.edu 36 13 20885888 20885888 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153251 exon4 c.G273T p.K91N . . . SACS 26278 broad.mit.edu 36 13 22803530 22803530 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014363 exon10 c.C12485T p.A4162V . . . SACS 26278 broad.mit.edu 36 13 22827928 22827928 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014363 exon8 c.C823A p.L275I . . . SPATA13 221178 broad.mit.edu 36 13 23766997 23766997 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166271 exon10 c.G3201T p.V1067V . . . ATP12A 479 broad.mit.edu 36 13 24181890 24181890 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185085 exon19 c.G2705A p.R902H . . . RNF17 56163 broad.mit.edu 36 13 24337048 24337048 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184993 exon29 c.A4001G p.H1334R . . . FRY 10129 broad.mit.edu 36 13 31703408 31703408 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon41 c.T5498A p.V1833D . . . FRY 10129 broad.mit.edu 36 13 31709688 31709688 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023037 exon44 c.T5983A p.S1995T . . . DCLK1 9201 broad.mit.edu 36 13 35584022 35584022 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004734 exon3 c.C707T p.T236M . . . DCLK1 9201 broad.mit.edu 36 13 35584179 35584179 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004734 exon3 c.C550T p.R184W . . . SPG20 23111 broad.mit.edu 36 13 35803624 35803624 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142295 exon3 c.T920C p.V307A . . . CCNA1 8900 broad.mit.edu 36 13 35904802 35904802 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003914 exon1 c.T44C p.I15T . . . FREM2 341640 broad.mit.edu 36 13 38348493 38348493 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207361 exon20 c.T8518C p.F2840L . . . DGKH 160851 broad.mit.edu 36 13 41681190 41681190 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178009 exon22 c.G2697A p.Q899Q . . . ZC3H13 23091 broad.mit.edu 36 13 45447943 45447943 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015070 exon12 c.G1944T p.Q648H . . . LCP1 3936 broad.mit.edu 36 13 45599727 45599727 + Nonstop_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002298 exon16 c.A1884C p.X628C . . . ATP7B 540 broad.mit.edu 36 13 51414579 51414579 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000053 exon15 c.C3356A p.P1119H . . . PCDH17 27253 broad.mit.edu 36 13 57106643 57106643 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040429 exon1 c.C1962T p.D654D . . . PCDH20 64881 broad.mit.edu 36 13 60885431 60885431 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022843 exon2 c.C802T p.R268C . . . MYCBP2 23077 broad.mit.edu 36 13 76640583 76640583 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015057 exon40 c.C6095T p.A2032V . . . EDNRB 1910 broad.mit.edu 36 13 77390480 77390480 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122659 exon1 c.C230T p.T77M . . . DZIP1 22873 broad.mit.edu 36 13 95035161 95035161 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014934 exon21 c.C2297T p.A766V . . . FARP1 10160 broad.mit.edu 36 13 97859771 97859771 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005766 exon14 c.C1593T p.G531G . . . ARHGEF7 8874 broad.mit.edu 36 13 110565935 110565935 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001113512 exon1 c.61delA p.K21fs . . . HSPH1 10808 broad.mit.edu 36 13 30630974 30630974 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006644 exon2 c.134delA p.N45fs . . . SLITRK1 114798 broad.mit.edu 36 13 83353510 83353510 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_052910 exon1 c.134delA p.K45fs . . . AHNAK2 113146 broad.mit.edu 36 14 104477387 104477388 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.15446_15447insG p.E5149fs . . . PPP2R5C 5527 broad.mit.edu 36 14 101454035 101454035 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002719 exon13 c.C1441T p.Q481X . . . TRAF3 7187 broad.mit.edu 36 14 102406365 102406365 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145725 exon3 c.G74T p.R25L . . . OR4K5 79317 broad.mit.edu 36 14 19458990 19458990 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005483 exon1 c.C385T p.P129S . . . TEP1 7011 broad.mit.edu 36 14 19910749 19910749 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007110 exon49 c.G7059A p.S2353S . . . TEP1 7011 broad.mit.edu 36 14 19946111 19946111 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007110 exon2 c.C328T p.R110W . . . RNASE7 84659 broad.mit.edu 36 14 20581382 20581382 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032572 exon2 c.G391A p.V131I . . . CHD8 57680 broad.mit.edu 36 14 20930778 20930778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020920 exon34 c.G5662A p.V1888I . . . SALL2 6297 broad.mit.edu 36 14 21062575 21062575 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005407 exon2 c.G1127A p.R376H . . . OXA1L 5018 broad.mit.edu 36 14 22310593 22310593 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005015 exon10 c.G1474A p.D492N . . . REM2 161253 broad.mit.edu 36 14 22425114 22425114 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173527 exon4 c.C561T p.T187T . . . JPH4 84502 broad.mit.edu 36 14 23110960 23110960 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032452 exon5 c.C1161T p.D387D . . . LRRC16B 90668 broad.mit.edu 36 14 23598190 23598190 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138360 exon20 c.G1578A p.L526L . . . ADCY4 196883 broad.mit.edu 36 14 23863140 23863140 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198592 exon17 c.C2014A p.L672I . . . ADCY4 196883 broad.mit.edu 36 14 23870320 23870320 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198592 exon6 c.A752G p.Q251R . . . NYNRIN 57523 broad.mit.edu 36 14 23947198 23947198 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025081 exon3 c.G482A p.R161Q . . . HECTD1 25831 broad.mit.edu 36 14 30675598 30675598 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015382 exon20 c.C3004T p.R1002W . . . FBXO33 254170 broad.mit.edu 36 14 38940381 38940381 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203301 exon3 c.A1146G p.E382E . . . LRFN5 145581 broad.mit.edu 36 14 41430568 41430568 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152447 exon4 c.C1751T p.T584M . . . MDGA2 161357 broad.mit.edu 36 14 46496477 46496477 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182830 exon9 c.T1045A p.L349M . . . TRIM9 114088 broad.mit.edu 36 14 50537308 50537308 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052978 exon6 c.C1307T p.A436V . . . NID2 22795 broad.mit.edu 36 14 51543086 51543086 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007361 exon20 c.G3923A p.R1308Q . . . KTN1 3895 broad.mit.edu 36 14 55200512 55200512 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079521 exon33 c.G3177A p.K1059K . . . PSMA3 5684 broad.mit.edu 36 14 57808346 57808346 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002788 exon11 c.T748C p.S250P . . . PPM1A 5494 broad.mit.edu 36 14 59826328 59826328 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021003 exon4 c.G1004A p.R335H . . . PLEKHH1 57475 broad.mit.edu 36 14 67098452 67098452 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020715 exon6 c.G452A p.S151N . . . ZFYVE26 23503 broad.mit.edu 36 14 67297865 67297865 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015346 exon35 c.C6559T p.R2187W . . . TSHR 7253 broad.mit.edu 36 14 80680394 80680394 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000369 exon10 c.C2239A p.L747I . . . FLRT2 23768 broad.mit.edu 36 14 85157749 85157749 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013231 exon2 c.T138C p.F46F . . . C14orf49 161176 broad.mit.edu 36 14 95002285 95002285 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152592 exon3 c.C363T p.A121A . . . CDC42BPB 9578 broad.mit.edu 36 14 102516990 102516990 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006035 exon8 c.1013delA p.K338fs . . . DHRS2 10202 broad.mit.edu 36 14 23178330 23178330 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005794 exon3 c.243delG p.Q81fs . . . ARHGAP5 394 broad.mit.edu 36 14 31632447 31632447 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030055 exon2 c.2821delA p.K941fs . . . POTEB 339010 broad.mit.edu 36 15 19305337 19305337 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207355 exon11 c.G1681T p.V561L . . . ATP10A 57194 broad.mit.edu 36 15 23514561 23514561 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024490 exon8 c.G1442A p.R481H . . . OCA2 4948 broad.mit.edu 36 15 25844887 25844887 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000275 exon19 c.C2060T p.A687V . . . HERC2 8924 broad.mit.edu 36 15 26121124 26121124 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004667 exon46 c.C7444A p.L2482I . . . NDNL2 56160 broad.mit.edu 36 15 27348517 27348517 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138704 exon1 c.C685T p.R229X . . . FMN1 342184 broad.mit.edu 36 15 30979606 30979606 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103184 exon10 c.G2851A p.V951M . . . THBS1 7057 broad.mit.edu 36 15 37668025 37668025 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003246 exon10 c.G1478A p.G493E . . . DISP2 85455 broad.mit.edu 36 15 38448582 38448582 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033510 exon8 c.G2977A p.V993M . . . RHOV 171177 broad.mit.edu 36 15 38953441 38953441 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133639 exon1 c.T189C p.T63T . . . MAPKBP1 23005 broad.mit.edu 36 15 39854836 39854836 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014994 exon2 c.G71A p.R24H . . . ZFP106 64397 broad.mit.edu 36 15 40529558 40529558 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022473 exon2 c.C2135T p.S712L . . . SPG11 80208 broad.mit.edu 36 15 42674944 42674944 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025137 exon26 c.C4440A p.A1480A . . . SPG11 80208 broad.mit.edu 36 15 42678308 42678308 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025137 exon22 c.T3705C p.N1235N . . . DUOX1 53905 broad.mit.edu 36 15 43241390 43241390 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017434 exon31 c.G4019T p.G1340V . . . CEP152 22995 broad.mit.edu 36 15 46877517 46877517 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001194998 exon3 c.T111C p.L37L . . . FGF7 2252 broad.mit.edu 36 15 47503895 47503895 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002009 exon2 c.C109G p.P37A . . . TRPM7 54822 broad.mit.edu 36 15 48690749 48690749 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017672 exon17 c.G2113T p.A705S . . . BCL2L10 10017 broad.mit.edu 36 15 50192021 50192021 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020396 exon1 c.C195T p.S65S . . . RSL24D1 51187 broad.mit.edu 36 15 53272274 53272274 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016304 exon2 c.G131A p.R44H . . . NEDD4 4734 broad.mit.edu 36 15 53909481 53909481 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006154 exon29 c.G2609A p.R870H . . . HERC1 8925 broad.mit.edu 36 15 61724777 61724777 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003922 exon56 c.G11036A p.R3679H . . . ZNF609 23060 broad.mit.edu 36 15 62757459 62757459 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015042 exon5 c.G3494A p.R1165H . . . CILP 8483 broad.mit.edu 36 15 63286191 63286191 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003613 exon4 c.C406T p.R136C . . . DENND4A 10260 broad.mit.edu 36 15 63749559 63749559 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144823 exon26 c.C4483T p.R1495W . . . PIAS1 8554 broad.mit.edu 36 15 66165752 66165752 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016166 exon2 c.G79A p.G27R . . . STOML1 9399 broad.mit.edu 36 15 72064754 72064754 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004809 exon5 c.A748C p.S250R . . . ISLR 3671 broad.mit.edu 36 15 72254515 72254515 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201526 exon2 c.C263T p.T88M . . . LMAN1L 79748 broad.mit.edu 36 15 72892323 72892323 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021819 exon1 c.G75A p.T25T . . . CTSH 1512 broad.mit.edu 36 15 77004814 77004814 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004390 exon10 c.G723T p.E241D . . . FSD2 123722 broad.mit.edu 36 15 81252832 81252832 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007122 exon2 c.T365A p.L122H . . . ADAMTSL3 57188 broad.mit.edu 36 15 82430312 82430312 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207517 exon20 c.C2563T p.R855C ADAMTSL3,large_intestine,colon,Substitution - Missense,0 . . ZSCAN2 54993 broad.mit.edu 36 15 82965151 82965151 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181877 exon3 c.G721A p.E241K . . . AGBL1 123624 broad.mit.edu 36 15 84615897 84615897 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152336 exon14 c.C1893T p.G631G . . . AGBL1 123624 broad.mit.edu 36 15 84867100 84867100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152336 exon18 c.G2473A p.A825T . . . ISG20 3669 broad.mit.edu 36 15 86999659 86999659 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002201 exon4 c.C439T p.L147F . . . ANPEP 290 broad.mit.edu 36 15 88148142 88148142 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001150 exon7 c.G1275A p.A425A . . . TTLL13 440307 broad.mit.edu 36 15 88602281 88602281 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029964 exon9 c.T943C p.S315P . . . IQGAP1 8826 broad.mit.edu 36 15 88828457 88828457 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003870 exon30 c.C3790T p.R1264W . . . NR2F2 7026 broad.mit.edu 36 15 94678682 94678682 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145155 exon2 c.C417A p.A139A . . . IGF1R 3480 broad.mit.edu 36 15 97068420 97068420 + Silent SNP C T T rs45468203 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000875 exon2 c.C201T p.A67A . . . ALDH1A3 220 broad.mit.edu 36 15 99251705 99251705 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000693 exon6 c.G561T p.L187L . . . PCSK6 5046 broad.mit.edu 36 15 99747245 99747245 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138322 exon9 c.C1255A p.L419I . . . SPATA5L1 79029 broad.mit.edu 36 15 43490014 43490014 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024063 exon3 c.1428delA p.L476fs . . . UNC13C 440279 broad.mit.edu 36 15 52612552 52612552 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080534 exon24 c.5692delA p.K1898fs . . . NDRG4 65009 broad.mit.edu 36 16 57079232 57079233 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022910 exon2 c.49_50insG p.R17fs . . . SLC7A5P2 387254 broad.mit.edu 36 16 21438550 21438551 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . CIITA 4261 broad.mit.edu 36 16 10908651 10908651 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000246 exon11 c.C1801A p.R601R . . . TXNDC11 51061 broad.mit.edu 36 16 11693138 11693138 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015914 exon8 c.C1409T p.A470V . . . MYH11 4629 broad.mit.edu 36 16 15721628 15721628 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040114 exon35 c.C4855T p.R1619C . . . ABCC1 4363 broad.mit.edu 36 16 16142565 16142565 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019862 exon30 c.T4345C p.Y1449H . . . SMG1 23049 broad.mit.edu 36 16 18735225 18735225 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015092 exon58 c.G10202A p.C3401Y . . . ACSM1 116285 broad.mit.edu 36 16 20542375 20542375 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052956 exon13 c.G1668A p.L556L . . . TSC2 7249 broad.mit.edu 36 16 2055610 2055610 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114382 exon16 c.C1689T p.A563A . . . DNAH3 55567 broad.mit.edu 36 16 20852170 20852170 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017539 exon62 c.C12158A p.P4053H . . . ABCA3 21 broad.mit.edu 36 16 2288434 2288434 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001089 exon15 c.T1850G p.L617R . . . ABCA3 21 broad.mit.edu 36 16 2314531 2314531 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001089 exon6 c.C322T p.R108C . . . PALB2 79728 broad.mit.edu 36 16 23541932 23541932 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024675 exon9 c.A2855G p.D952G . . . PRKCB 5579 broad.mit.edu 36 16 24133562 24133562 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002738 exon17 c.G1946C p.R649T . . . SLC5A11 115584 broad.mit.edu 36 16 24825918 24825918 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052944 exon12 c.G1186A p.A396T . . . TBC1D24 57465 broad.mit.edu 36 16 2488324 2488324 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199107 exon4 c.G1068A p.W356X . . . PRSS21 10942 broad.mit.edu 36 16 2808944 2808944 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006799 exon4 c.G523T p.G175C . . . APOB48R 55911 broad.mit.edu 36 16 28416907 28416907 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018690 exon4 c.C2933T p.P978L . . . CD19 930 broad.mit.edu 36 16 28855389 28855389 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178098 exon7 c.G1051A p.V351M . . . MVP 9961 broad.mit.edu 36 16 29766053 29766053 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017458 exon14 c.A2300C p.E767A . . . FAM57B 83723 broad.mit.edu 36 16 29945508 29945508 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031478 exon3 c.C367T p.R123C . . . SRCAP 10847 broad.mit.edu 36 16 30657748 30657748 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006662 exon34 c.C8886T p.S2962S . . . SRCAP 10847 broad.mit.edu 36 16 30658329 30658329 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006662 exon34 c.G9467A p.R3156H . . . FUS 2521 broad.mit.edu 36 16 31109891 31109891 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170634 exon14 c.T1497C p.G499G . . . PYDC1 260434 broad.mit.edu 36 16 31135739 31135739 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152901 exon1 c.C112T p.R38C . . . PYDC1 260434 broad.mit.edu 36 16 31135843 31135843 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152901 exon1 c.C8T p.T3M . . . ITGAX 3687 broad.mit.edu 36 16 31280662 31280662 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000887 exon10 c.G1017A p.T339T . . . ARMC5 79798 broad.mit.edu 36 16 31383538 31383538 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001105247 exon4 c.C1693T p.R565C . . . C16orf58 64755 broad.mit.edu 36 16 31412739 31412739 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022744 exon7 c.C722T p.A241V . . . SLX4 84464 broad.mit.edu 36 16 3579049 3579049 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032444 exon12 c.C4591T p.P1531S . . . CREBBP 1387 broad.mit.edu 36 16 3730471 3730471 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004380 exon24 c.G4063A p.G1355R . . . CORO7 79585 broad.mit.edu 36 16 4397557 4397557 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024535 exon5 c.G433A p.A145T . . . ORC6 23594 broad.mit.edu 36 16 45282470 45282470 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014321 exon2 c.G132T p.E44D . . . ADCY7 113 broad.mit.edu 36 16 48892149 48892149 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114 exon8 c.G1099A p.V367M . . . NOD2 64127 broad.mit.edu 36 16 49303114 49303114 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022162 exon4 c.G1791A p.A597A . . . FTO 79068 broad.mit.edu 36 16 52480345 52480345 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080432 exon7 c.G1220T p.W407L . . . SLC6A2 6530 broad.mit.edu 36 16 54291645 54291645 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172504 exon12 c.G1684A p.A562T . . . NLRC5 84166 broad.mit.edu 36 16 55617641 55617641 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032206 exon6 c.G1285A p.V429M . . . NLRC5 84166 broad.mit.edu 36 16 55659199 55659199 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032206 exon36 c.T4457C p.L1486P . . . CPNE2 221184 broad.mit.edu 36 16 55704838 55704838 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152727 exon3 c.C318T p.D106D . . . GPR97 222487 broad.mit.edu 36 16 56270698 56270698 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170776 exon5 c.G601A p.V201I . . . CDH8 1006 broad.mit.edu 36 16 60246915 60246915 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001796 exon11 c.C1866T p.G622G . . . EXOC3L 283849 broad.mit.edu 36 16 65776188 65776188 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178516 exon13 c.G1932A p.A644A . . . LRRC29 26231 broad.mit.edu 36 16 65801506 65801506 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004055 exon3 c.C87T p.H29H . . . CLEC18C 283971 broad.mit.edu 36 16 68777301 68777301 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173619 exon11 c.C1224T p.C408C . . . AARS 16 broad.mit.edu 36 16 68846040 68846040 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001605 exon17 c.C2385T p.I795I . . . HYDIN 54768 broad.mit.edu 36 16 69471080 69471080 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon61 c.G10293T p.T3431T . . . HYDIN 54768 broad.mit.edu 36 16 69744063 69744063 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon7 c.G841T p.G281C . . . FTSJD1 55783 broad.mit.edu 36 16 69876416 69876416 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018348 exon3 c.T909C p.P303P . . . ZFHX3 463 broad.mit.edu 36 16 71541974 71541974 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006885 exon3 c.C3111T p.P1037P . . . CHST6 4166 broad.mit.edu 36 16 74070226 74070226 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021615 exon3 c.C1002A p.R334R . . . CHST5 23563 broad.mit.edu 36 16 74120741 74120741 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024533 exon3 c.C1043T p.A348V . . . ADAMTS18 170692 broad.mit.edu 36 16 75884637 75884637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199355 exon20 c.G3026A p.R1009Q . . . PLCG2 5336 broad.mit.edu 36 16 80531013 80531013 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002661 exon30 c.G3329A p.S1110N . . . TAF1C 9013 broad.mit.edu 36 16 82774218 82774218 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139353 exon6 c.G246C p.K82N . . . ADAD2 161931 broad.mit.edu 36 16 82786219 82786219 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145400 exon4 c.C651T p.S217S . . . FOXF1 2294 broad.mit.edu 36 16 85104153 85104153 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001451 exon2 c.G1101A p.Q367Q . . . GALNS 2588 broad.mit.edu 36 16 87435874 87435874 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000512 exon3 c.C251T p.A84V . . . FANCA 2175 broad.mit.edu 36 16 88393543 88393543 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000135 exon9 c.C797T p.T266M . . . GRIN2A 2903 broad.mit.edu 36 16 9765026 9765026 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000833 exon14 c.C3876T p.Y1292Y . . . RSL1D1 26156 broad.mit.edu 36 16 11843274 11843274 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015659 exon6 c.720delA p.K240fs . . . CD19 930 broad.mit.edu 36 16 28857540 28857540 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001178098 exon13 c.1532delC p.A511fs . . . ZNF629 23361 broad.mit.edu 36 16 30702920 30702920 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080417 exon3 c.230delC p.P77fs . . . ZDHHC7 55625 broad.mit.edu 36 16 83567540 83567540 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017740 exon8 c.837delC p.P279fs . . . RAI1 10743 broad.mit.edu 36 17 17640083 17640084 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030665 exon3 c.3096_3097insC p.G1032fs . . . RNF43 54894 broad.mit.edu 36 17 53790814 53790815 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017763 exon9 c.1322_1323insA p.P441fs . . . CSH1 1442 broad.mit.edu 36 17 59327404 59327405 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . MYH8 4626 broad.mit.edu 36 17 10256523 10256523 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002472 exon14 c.C1305T p.Y435Y . . . DNAH9 1770 broad.mit.edu 36 17 11719128 11719128 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon53 c.G10380T p.E3460D . . . ARHGAP44 9912 broad.mit.edu 36 17 12773038 12773038 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014859 exon7 c.G532A p.A178T . . . MYO15A 51168 broad.mit.edu 36 17 17966155 17966155 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016239 exon2 c.C3316T p.R1106W . . . DPH1 1801 broad.mit.edu 36 17 1889815 1889815 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001383 exon7 c.C712A p.R238S . . . MAPK7 5598 broad.mit.edu 36 17 19226166 19226166 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139033 exon5 c.G1957A p.A653T . . . TSR1 55720 broad.mit.edu 36 17 2179415 2179415 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018128 exon11 c.C1875T p.A625A . . . TNFAIP1 7126 broad.mit.edu 36 17 23693468 23693468 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021137 exon6 c.G587A p.R196H . . . VTN 7448 broad.mit.edu 36 17 23720100 23720100 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000638 exon5 c.G746A p.G249D . . . SPAG5 10615 broad.mit.edu 36 17 23930372 23930372 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006461 exon19 c.G3031A p.A1011T . . . ABHD15 116236 broad.mit.edu 36 17 24914177 24914177 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198147 exon2 c.G935A p.R312H . . . SSH2 85464 broad.mit.edu 36 17 25035708 25035708 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033389 exon5 c.A397G p.S133G . . . SSH2 85464 broad.mit.edu 36 17 25145064 25145064 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033389 exon2 c.G81T p.E27D . . . RAB11FIP4 84440 broad.mit.edu 36 17 26785189 26785189 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032932 exon3 c.C259T p.L87L . . . CDK5R1 8851 broad.mit.edu 36 17 27838988 27838988 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003885 exon2 c.G237A p.T79T . . . RAP1GAP2 23108 broad.mit.edu 36 17 2876481 2876481 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015085 exon21 c.C1953T p.G651G . . . TMEM132E 124842 broad.mit.edu 36 17 29977346 29977346 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207313 exon2 c.C155T p.T52M . . . AP2B1 163 broad.mit.edu 36 17 30990889 30990889 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001282 exon11 c.C1434T p.T478T . . . GPR179 440435 broad.mit.edu 36 17 33738217 33738217 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004334 exon11 c.T4761C p.P1587P . . . PCGF2 7703 broad.mit.edu 36 17 34145284 34145284 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007144 exon11 c.C753T p.S251S . . . PLXDC1 57125 broad.mit.edu 36 17 34497448 34497448 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020405 exon8 c.G845A p.R282H . . . MED1 5469 broad.mit.edu 36 17 34820432 34820432 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004774 exon17 c.C1568A p.P523Q . . . ERBB2 2064 broad.mit.edu 36 17 35137711 35137711 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005862 exon30 c.A3566G p.N1189S . . . KRT10 3858 broad.mit.edu 36 17 36230422 36230422 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000421 exon3 c.G734A p.R245H . . . KRT10 3858 broad.mit.edu 36 17 36231783 36231783 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000421 exon1 c.G581A p.R194H . . . KRT12 3859 broad.mit.edu 36 17 36272977 36272977 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000223 exon6 c.C1240T p.R414W . . . KRT39 390792 broad.mit.edu 36 17 36368636 36368636 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213656 exon7 c.C1219T p.R407C . . . KRTAP4-3 85290 broad.mit.edu 36 17 36577499 36577499 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033187 exon1 c.G452A p.R151H . . . KRT13 3860 broad.mit.edu 36 17 36915135 36915136 + Missense_Mutation DNP TA AG AG novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 TA TA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153490 exon1 c.193_194CT . . . . WNK4 65266 broad.mit.edu 36 17 38188400 38188400 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032387 exon2 c.G717A p.S239S . . . NBR1 4077 broad.mit.edu 36 17 38591900 38591900 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005899 exon6 c.G315T p.R105S . . . DUSP3 1845 broad.mit.edu 36 17 39202551 39202551 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004090 exon3 c.C510A p.L170L . . . C17orf53 78995 broad.mit.edu 36 17 39587513 39587513 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171251 exon6 c.A1513G p.T505A . . . SLC4A1 6521 broad.mit.edu 36 17 39693391 39693391 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000342 exon6 c.T392C p.V131A . . . ITGA2B 3674 broad.mit.edu 36 17 39816802 39816802 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000419 exon11 c.C984T p.D328D . . . GPATCH8 23131 broad.mit.edu 36 17 39897390 39897390 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002909 exon3 c.C169T p.Q57X . . . HIGD1B 51751 broad.mit.edu 36 17 40282189 40282189 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016438 exon2 c.C142T p.R48W . . . DCAKD 79877 broad.mit.edu 36 17 40457505 40457505 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024819 exon5 c.G518A p.R173H . . . PLCD3 113026 broad.mit.edu 36 17 40553303 40553303 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133373 exon4 c.G599A p.S200N . . . FMNL1 752 broad.mit.edu 36 17 40679078 40679078 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005892 exon24 c.G3045T p.E1015D . . . SPNS3 201305 broad.mit.edu 36 17 4328667 4328667 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182538 exon9 c.G1165A p.A389T . . . DLX4 1748 broad.mit.edu 36 17 45401987 45401987 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138281 exon1 c.C156T p.G52G . . . PPP1R9B 84687 broad.mit.edu 36 17 45581516 45581516 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032595 exon1 c.G1358A p.R453H . . . MYCBPAP 84073 broad.mit.edu 36 17 45949670 45949670 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032133 exon3 c.T351C p.L117L . . . TM4SF5 9032 broad.mit.edu 36 17 4632574 4632574 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003963 exon3 c.C288T p.F96F . . . GP1BA 2811 broad.mit.edu 36 17 4778521 4778521 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000173 exon2 c.G1842A p.R614R . . . KIF2B 84643 broad.mit.edu 36 17 49257010 49257010 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032559 exon1 c.A1617G p.R539R . . . TRIM25 7706 broad.mit.edu 36 17 52331524 52331524 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005082 exon5 c.T1104C p.H368H . . . DERL2 51009 broad.mit.edu 36 17 5330155 5330155 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016041 exon1 c.C51T p.S17S . . . BZRAP1 9256 broad.mit.edu 36 17 53751602 53751602 + Missense_Mutation SNP C T T rs11652447 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004758 exon13 c.G1547A p.S516N . . . TRIM37 4591 broad.mit.edu 36 17 54460816 54460816 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005207 exon19 c.C1999T p.R667X . . . BRIP1 83990 broad.mit.edu 36 17 57118257 57118257 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032043 exon19 c.G2627A p.S876N . . . MRC2 9902 broad.mit.edu 36 17 58113355 58113355 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006039 exon20 c.C2831T p.T944I . . . DCAF7 10238 broad.mit.edu 36 17 59009670 59009670 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005828 exon2 c.C246T p.G82G . . . FTSJ3 117246 broad.mit.edu 36 17 59255313 59255313 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017647 exon12 c.A1017T p.E339D . . . SCN4A 6329 broad.mit.edu 36 17 59372671 59372671 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000334 exon24 c.G4703A p.C1568Y . . . WSCD1 23302 broad.mit.edu 36 17 5964641 5964641 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015253 exon9 c.C1664T p.T555M . . . LRRC37A3 374819 broad.mit.edu 36 17 60287175 60287175 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199340 exon11 c.G3551T p.R1184M . . . CACNG5 27091 broad.mit.edu 36 17 62303962 62303962 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014404 exon1 c.C50T p.A17V . . . CACNG4 27092 broad.mit.edu 36 17 62457195 62457195 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014405 exon4 c.C597T p.G199G . . . FAM64A 54478 broad.mit.edu 36 17 6289188 6289188 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019013 exon2 c.G34A p.V12M . . . PITPNM3 83394 broad.mit.edu 36 17 6305454 6305454 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031220 exon18 c.G2453T p.R818L . . . KIAA0753 9851 broad.mit.edu 36 17 6423798 6423798 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014804 exon19 c.C2897T p.A966V . . . ABCA10 10349 broad.mit.edu 36 17 64695500 64695500 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080282 exon20 c.A2247G p.A749A . . . FBXO39 162517 broad.mit.edu 36 17 6624511 6624511 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153230 exon2 c.C600T p.I200I . . . YBX2 51087 broad.mit.edu 36 17 7134523 7134523 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015982 exon5 c.G515A p.R172H . . . FBF1 85302 broad.mit.edu 36 17 71445267 71445267 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080542 exon3 c.A6G p.A2A . . . EVPL 2125 broad.mit.edu 36 17 71515698 71515698 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001988 exon22 c.C5183A p.T1728N . . . NEURL4 84461 broad.mit.edu 36 17 7162369 7162369 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032442 exon24 c.G3895A p.A1299T . . . PRPSAP1 5635 broad.mit.edu 36 17 71839992 71839992 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002766 exon4 c.G410T p.R137M . . . CHRNB1 1140 broad.mit.edu 36 17 7299377 7299377 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000747 exon9 c.C1095T p.P365P . . . ZBTB4 57659 broad.mit.edu 36 17 7307111 7307111 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020899 exon4 c.G1914T p.E638D . . . ZBTB4 57659 broad.mit.edu 36 17 7307871 7307871 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020899 exon4 c.G1154A p.R385Q . . . TNFSF12 8742 broad.mit.edu 36 17 7401348 7401348 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003809 exon7 c.C707T p.A236V . . . FXR2 9513 broad.mit.edu 36 17 7436604 7436604 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004860 exon15 c.C1768A p.R590S . . . DNAH2 146754 broad.mit.edu 36 17 7581211 7581211 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020877 exon7 c.G1080A p.K360K . . . FN3KRP 79672 broad.mit.edu 36 17 78278016 78278016 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024619 exon6 c.T610C p.F204L . . . RCVRN 5957 broad.mit.edu 36 17 9748887 9748887 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002903 exon1 c.C336T p.D112D . . . DNAH9 1770 broad.mit.edu 36 17 11496893 11496893 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001372 exon14 c.2444delA p.Q815fs . . . ZNF624 57547 broad.mit.edu 36 17 16466927 16466927 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020787 exon6 c.1998delA p.K666fs . . . SDF2 6388 broad.mit.edu 36 17 24012990 24012990 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006923 exon1 c.32delG p.G11fs . . . ATAD5 79915 broad.mit.edu 36 17 26209415 26209415 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024857 exon9 c.2904delA p.L968fs . . . TMEM92 162461 broad.mit.edu 36 17 45711336 45711336 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168215 exon5 c.346delC p.P116fs . . . GP1BA 2811 broad.mit.edu 36 17 4778114 4778114 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000173 exon2 c.1435delA p.K479fs . . . PRR11 55771 broad.mit.edu 36 17 54601953 54601953 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018304 exon2 c.58delA p.K20fs . . . ABCA9 10350 broad.mit.edu 36 17 64515880 64515880 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080283 exon24 c.3239delT p.L1080X . . . DVL2 1856 broad.mit.edu 36 17 7070318 7070318 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004422 exon15 c.1801delG p.A601fs . . . CBX8 57332 broad.mit.edu 36 17 75383044 75383044 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020649 exon5 c.1155delT p.F385fs . . . TMEM105 284186 broad.mit.edu 36 17 76902142 76902142 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_178520 exon3 c.294delG p.G98fs . . . CTAGE1 64693 broad.mit.edu 36 18 18250812 18250812 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172241 exon1 c.A961G p.T321A . . . NDC80 10403 broad.mit.edu 36 18 2568016 2568016 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006101 exon5 c.C352T p.Q118X . . . DSC1 1823 broad.mit.edu 36 18 26968035 26968035 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004948 exon13 c.C1933T p.P645S . . . FHOD3 80206 broad.mit.edu 36 18 32428814 32428814 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025135 exon7 c.G673A p.A225T . . . FHOD3 80206 broad.mit.edu 36 18 32589235 32589235 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025135 exon22 c.G3863C p.R1288T . . . TCEB3B 51224 broad.mit.edu 36 18 42815529 42815529 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016427 exon1 c.C105T p.S35S . . . KATNAL2 83473 broad.mit.edu 36 18 42857827 42857827 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031303 exon12 c.C992T p.P331L . . . DCC 1630 broad.mit.edu 36 18 49102500 49102500 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005215 exon14 c.A2139G p.A713A . . . POLI 11201 broad.mit.edu 36 18 50061100 50061100 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007195 exon5 c.C625T p.R209W . . . CETN1 1068 broad.mit.edu 36 18 570586 570586 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004066 exon1 c.C178A p.L60M . . . SERPINB4 6318 broad.mit.edu 36 18 59479329 59479329 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006919 exon2 c.C102T p.I34I . . . SERPINB11 89778 broad.mit.edu 36 18 59539113 59539113 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080475 exon7 c.G687A p.P229P . . . SERPINB8 5271 broad.mit.edu 36 18 59805210 59805210 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002640 exon7 c.T843C p.P281P . . . CDH7 1005 broad.mit.edu 36 18 61581197 61581197 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004361 exon2 c.C139T p.R47C . . . CDH19 28513 broad.mit.edu 36 18 62353210 62353210 + Silent SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021153 exon8 c.A1329T p.T443T . . . DSEL 92126 broad.mit.edu 36 18 63331509 63331509 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032160 exon2 c.G1347T p.K449N . . . CD226 10666 broad.mit.edu 36 18 65714211 65714211 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006566 exon4 c.G433T p.G145X . . . ARHGAP28 79822 broad.mit.edu 36 18 6872152 6872152 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010000 exon10 c.T830G p.L277R . . . LAMA1 284217 broad.mit.edu 36 18 6940835 6940835 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon58 c.A8343C p.K2781N . . . FAM69C 125704 broad.mit.edu 36 18 70254719 70254719 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001044369 exon4 c.G1257T p.K419N . . . TSHZ1 10194 broad.mit.edu 36 18 71129332 71129332 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005786 exon2 c.C2847T p.G949G . . . CTDP1 9150 broad.mit.edu 36 18 75575519 75575519 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_048368 exon8 c.G1071A p.P357P . . . PARD6G 84552 broad.mit.edu 36 18 76019077 76019077 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032510 exon3 c.G699A p.T233T . . . PTPRM 5797 broad.mit.edu 36 18 8384504 8384504 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002845 exon30 c.C4200T p.C1400C . . . KIAA0802 23255 broad.mit.edu 36 18 8774753 8774753 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015210 exon6 c.A1643G p.E548G . . . KIAA0802 23255 broad.mit.edu 36 18 8783058 8783058 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015210 exon8 c.C1950T p.L650L . . . CEP192 55125 broad.mit.edu 36 18 13039146 13039146 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032142 exon16 c.2356delA p.K786fs . . . ESCO1 114799 broad.mit.edu 36 18 17408504 17408504 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052911 exon4 c.299delA p.K100fs . . . THOC1 9984 broad.mit.edu 36 18 255499 255499 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005131 exon2 c.86delA p.N29fs . . . ZNF271 10778 broad.mit.edu 36 18 31141115 31141115 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . HAPLN4 404037 broad.mit.edu 36 19 19232885 19232886 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_023002 exon3 c.221_222insG p.A74fs . . . DMKN 93099 broad.mit.edu 36 19 40696159 40696160 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001126058 exon1 c.59_60insG p.E20fs . . . GRLF1 2909 broad.mit.edu 36 19 52116680 52116681 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004491 exon1 c.2908_2909insC p.S970fs . . . TPRX1 284355 broad.mit.edu 36 19 52996924 52996925 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198479 exon2 c.1156_1157insA p.H386fs . . . ZNF677 342926 broad.mit.edu 36 19 58432101 58432102 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182609 exon5 c.1691_1692insA p.S564fs . . . RAVER1 125950 broad.mit.edu 36 19 10300472 10300472 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133452 exon3 c.G653A p.R218H . . . SLC44A2 57153 broad.mit.edu 36 19 10597932 10597932 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020428 exon2 c.C41T p.T14M . . . ZNF799 90576 broad.mit.edu 36 19 12363429 12363429 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080821 exon4 c.C783A p.A261A . . . CACNA1A 773 broad.mit.edu 36 19 13306249 13306249 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174080 exon8 c.C1141T p.R381W . . . ZSWIM4 65249 broad.mit.edu 36 19 13791237 13791237 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023072 exon9 c.G1640A p.R547H . . . OR10H2 26538 broad.mit.edu 36 19 15699993 15699993 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013939 exon1 c.C140T p.A47V . . . SLC35E1 79939 broad.mit.edu 36 19 16538437 16538437 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024881 exon4 c.G662T p.R221L . . . USHBP1 83878 broad.mit.edu 36 19 17228291 17228291 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031941 exon9 c.G1459A p.V487M . . . C19orf62 29086 broad.mit.edu 36 19 17248698 17248698 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001033549 exon8 c.G766A p.E256K . . . JAK3 3718 broad.mit.edu 36 19 17808972 17808972 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000215 exon13 c.C1752T p.L584L . . . FKBP8 23770 broad.mit.edu 36 19 18510032 18510032 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012181 exon5 c.G766A p.A256T . . . BTBD2 55643 broad.mit.edu 36 19 1941031 1941031 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017797 exon5 c.G960A p.P320P . . . ZNF506 440515 broad.mit.edu 36 19 19766931 19766931 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145404 exon3 c.A669C p.K223N . . . ZNF431 170959 broad.mit.edu 36 19 21157424 21157424 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133473 exon5 c.G478T p.G160C . . . ZNF43 7594 broad.mit.edu 36 19 21783892 21783892 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003423 exon4 c.T787C p.C263R . . . ZNF554 115196 broad.mit.edu 36 19 2785045 2785045 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102651 exon5 c.G812T p.R271I . . . THEG 51298 broad.mit.edu 36 19 313260 313260 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199202 exon7 c.G1008C p.M336I . . . NFIC 4782 broad.mit.edu 36 19 3400072 3400072 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005597 exon7 c.C1019T p.P340L . . . TSHZ3 57616 broad.mit.edu 36 19 36459801 36459801 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020856 exon2 c.G2738A p.S913N . . . ANKRD27 84079 broad.mit.edu 36 19 37809535 37809535 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032139 exon16 c.G1459A p.A487T . . . WDR88 126248 broad.mit.edu 36 19 38331592 38331592 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173479 exon5 c.C615T p.F205F . . . LRP3 4037 broad.mit.edu 36 19 38387501 38387501 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002333 exon4 c.T378C p.P126P . . . SLC7A10 56301 broad.mit.edu 36 19 38393979 38393979 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019849 exon7 c.C1008A p.T336T . . . ZNF599 148103 broad.mit.edu 36 19 39942521 39942521 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007248 exon4 c.G1025A p.G342D . . . LSR 51599 broad.mit.edu 36 19 40449179 40449179 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015925 exon5 c.G943A p.A315T . . . MAG 4099 broad.mit.edu 36 19 40493363 40493363 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199216 exon9 c.C1518T p.C506C . . . LIN37 55957 broad.mit.edu 36 19 40937208 40937208 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019104 exon9 c.G734A p.R245Q . . . KIRREL2 84063 broad.mit.edu 36 19 41049246 41049246 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032123 exon16 c.T1870C p.W624R . . . WDR62 284403 broad.mit.edu 36 19 41265920 41265920 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083961 exon11 c.G1487A p.R496Q . . . ZNF607 84775 broad.mit.edu 36 19 42881172 42881172 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032689 exon5 c.G1700A p.G567D . . . SH3GL1 6455 broad.mit.edu 36 19 4316618 4316618 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003025 exon4 c.G192A p.S64S . . . LGALS4 3960 broad.mit.edu 36 19 43984807 43984807 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006149 exon8 c.C648T p.P216P . . . UBXN6 80700 broad.mit.edu 36 19 4408678 4408678 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025241 exon1 c.A17G p.Q6R . . . LRFN1 57622 broad.mit.edu 36 19 44497586 44497586 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020862 exon1 c.C231T p.I77I . . . PLIN4 729359 broad.mit.edu 36 19 4463763 4463763 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080400 exon3 c.G1167A p.M389I . . . SUPT5H 6829 broad.mit.edu 36 19 44655353 44655353 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003169 exon21 c.G2099A p.R700Q . . . DLL3 10683 broad.mit.edu 36 19 44686610 44686610 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203486 exon5 c.C712T p.R238X . . . FCGBP 8857 broad.mit.edu 36 19 45122181 45122181 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon3 c.C1602T p.R534R . . . FCGBP 8857 broad.mit.edu 36 19 45125041 45125041 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003890 exon2 c.C1068T p.G356G . . . ZNF780B 163131 broad.mit.edu 36 19 45232373 45232373 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005851 exon5 c.A2233T p.I745F . . . MAP3K10 4294 broad.mit.edu 36 19 45402236 45402236 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002446 exon3 c.G868A p.G290R . . . PLD3 23646 broad.mit.edu 36 19 45569466 45569466 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031696 exon9 c.G725A p.R242Q . . . SPTBN4 57731 broad.mit.edu 36 19 45711157 45711157 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020971 exon14 c.G2621A p.R874H . . . EGLN2 112398 broad.mit.edu 36 19 46004310 46004310 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080732 exon3 c.C854T p.A285V . . . CYP2F1 1572 broad.mit.edu 36 19 46319792 46319792 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000774 exon6 c.G736A p.A246T . . . HNRNPUL1 11100 broad.mit.edu 36 19 46473907 46473907 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144732 exon5 c.A350G p.N117S . . . MEGF8 1954 broad.mit.edu 36 19 47552924 47552924 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001410 exon26 c.G4580A p.R1527H . . . LYPD3 27076 broad.mit.edu 36 19 48660391 48660391 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014400 exon2 c.C137T p.P46L . . . ZNF223 7766 broad.mit.edu 36 19 49262330 49262330 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013361 exon5 c.G509A p.R170H . . . PVRL2 5819 broad.mit.edu 36 19 50073370 50073370 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002856 exon6 c.G1093A p.V365M . . . MARK4 57787 broad.mit.edu 36 19 50489515 50489515 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199867 exon14 c.G1563T p.E521D . . . ERCC2 2068 broad.mit.edu 36 19 50552463 50552463 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000400 exon15 c.T1384C p.S462P . . . SYMPK 8189 broad.mit.edu 36 19 51049512 51049512 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004819 exon2 c.G82A p.D28N . . . NANOS2 339345 broad.mit.edu 36 19 51109610 51109610 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001029861 exon1 c.C182T p.T61I . . . PTGIR 5739 broad.mit.edu 36 19 51818637 51818637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000960 exon2 c.G686A p.R229H . . . CCDC9 26093 broad.mit.edu 36 19 52466222 52466222 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015603 exon11 c.C1129A p.P377T . . . CYTH2 9266 broad.mit.edu 36 19 53668446 53668446 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004228 exon5 c.A433G p.R145G . . . FLT3LG 2323 broad.mit.edu 36 19 54670775 54670775 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001459 exon3 c.C49T p.L17L . . . MED25 81857 broad.mit.edu 36 19 55024052 55024052 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030973 exon5 c.C418T p.R140W . . . NUP62 23636 broad.mit.edu 36 19 55103925 55103925 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012346 exon2 c.G952A p.A318T . . . POLD1 5424 broad.mit.edu 36 19 55608920 55608920 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002691 exon19 c.C2360T p.P787L . . . LRRC4B 94030 broad.mit.edu 36 19 55713435 55713435 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080457 exon3 c.C1347T p.A449A . . . CTU1 90353 broad.mit.edu 36 19 56294179 56294179 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145232 exon3 c.G538A p.V180M . . . CD33 945 broad.mit.edu 36 19 56430291 56430291 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001772 exon5 c.C813T p.L271L . . . SIGLEC6 946 broad.mit.edu 36 19 56722864 56722864 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001245 exon7 c.G1137T p.Q379H . . . FPR3 2359 broad.mit.edu 36 19 57019485 57019485 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002030 exon2 c.C672T p.I224I . . . ZNF350 59348 broad.mit.edu 36 19 57160144 57160144 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021632 exon5 c.C1374T p.N458N . . . ZNF468 90333 broad.mit.edu 36 19 58036635 58036635 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199132 exon5 c.C565T p.Q189X . . . PRKCG 5582 broad.mit.edu 36 19 59086824 59086824 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002739 exon6 c.G614A p.R205Q . . . PRPF31 26121 broad.mit.edu 36 19 59318993 59318993 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015629 exon7 c.C581T p.A194V . . . LILRB5 10990 broad.mit.edu 36 19 59452278 59452278 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081442 exon3 c.G241A p.A81T . . . KIR3DL3 115653 broad.mit.edu 36 19 59930898 59930898 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153443 exon4 c.G365T p.R122I . . . KIR3DL2 3812 broad.mit.edu 36 19 60055490 60055490 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006737 exon3 c.G296A p.R99H . . . NLRP2 55655 broad.mit.edu 36 19 60185603 60185603 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001174083 exon7 c.C656T p.A219V . . . NLRP8 126205 broad.mit.edu 36 19 61151363 61151363 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176811 exon1 c.C283T p.R95X . . . NLRP8 126205 broad.mit.edu 36 19 61157880 61157880 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_176811 exon3 c.G644T p.G215V . . . ZIM2 23619 broad.mit.edu 36 19 61977929 61977929 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146326 exon12 c.A1523G p.Y508C . . . PEG3 5178 broad.mit.edu 36 19 62018524 62018524 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146186 exon7 c.G3098T p.C1033F . . . ZIK1 284307 broad.mit.edu 36 19 62793736 62793736 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010879 exon4 c.C745T p.R249C . . . ZNF551 90233 broad.mit.edu 36 19 62888500 62888500 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138347 exon2 c.A92G p.D31G . . . ZNF606 80095 broad.mit.edu 36 19 63203909 63203909 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025027 exon3 c.G42A p.T14T . . . VAV1 7409 broad.mit.edu 36 19 6779446 6779446 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005428 exon11 c.C1040T p.T347M VAV1,kidney,NS,Substitution - coding silent,-1 . . EMR1 2015 broad.mit.edu 36 19 6855182 6855182 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001974 exon8 c.T938C p.F313S . . . MCOLN1 57192 broad.mit.edu 36 19 7497778 7497778 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020533 exon4 c.C537T p.N179N . . . LPPR3 79948 broad.mit.edu 36 19 765531 765531 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024888 exon6 c.C818T p.A273V . . . LPPR3 79948 broad.mit.edu 36 19 765912 765912 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024888 exon5 c.C573T p.H191H . . . CD320 51293 broad.mit.edu 36 19 8273483 8273483 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016579 exon5 c.T713G p.L238R . . . MYO1F 4542 broad.mit.edu 36 19 8498319 8498319 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012335 exon22 c.G2377T p.G793W . . . ADAMTS10 81794 broad.mit.edu 36 19 8566728 8566728 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030957 exon12 c.C1397A p.T466K . . . MBD3L1 85509 broad.mit.edu 36 19 8814859 8814859 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145208 exon1 c.G505A p.A169T . . . MUC16 94025 broad.mit.edu 36 19 8927842 8927842 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.G20604A p.L6868L . . . MUC16 94025 broad.mit.edu 36 19 8928610 8928610 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C19836A p.A6612A . . . ZNF426 79088 broad.mit.edu 36 19 9500526 9500526 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024106 exon8 c.A1195G p.K399E . . . ZNF791 163049 broad.mit.edu 36 19 12600502 12600502 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153358 exon4 c.1159delA p.K387fs . . . CRTC1 23373 broad.mit.edu 36 19 18748993 18748993 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015321 exon14 c.1706delC p.S569fs . . . CD79A 973 broad.mit.edu 36 19 47075450 47075450 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001783 exon3 c.385delC p.P129fs . . . VASP 7408 broad.mit.edu 36 19 50717452 50717452 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003370 exon6 c.493delC p.P165fs . . . SIX5 147912 broad.mit.edu 36 19 50960684 50960684 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175875 exon3 c.2135delG p.G712fs . . . SYMPK 8189 broad.mit.edu 36 19 51013097 51013097 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004819 exon23 c.3041delG p.G1014fs . . . C19orf73 55150 broad.mit.edu 36 19 54313949 54313949 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018111 exon1 c.143delC p.P48fs . . . PTOV1 53635 broad.mit.edu 36 19 55055339 55055339 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017432 exon12 c.1242delG p.M414fs . . . FIZ1 84922 broad.mit.edu 36 19 60800987 60800987 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032836 exon2 c.57delC p.P19fs . . . LRRC8E 80131 broad.mit.edu 36 19 7870763 7870763 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025061 exon3 c.1356delC p.F452fs . . . KIR3DX1 90011 broad.mit.edu 36 19 59736956 59736956 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . KCNA10 3744 broad.mit.edu 36 1 110861630 110861631 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005549 exon1 c.1303_1304insG p.K435fs . . . DENND2C 163259 broad.mit.edu 36 1 114932049 114932050 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198459 exon16 c.2308_2309insT p.V770fs . . . DNAH14 127602 broad.mit.edu 36 1 223214559 223214560 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_144989 exon4 c.299_300insA p.R100fs . . . LYST 1130 broad.mit.edu 36 1 234039826 234039827 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000081 exon5 c.915_916insA p.N305fs . . . CCDC27 148870 broad.mit.edu 36 1 3676292 3676293 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152492 exon11 c.1829_1830insT p.D610fs . . . KIAA0040 9674 broad.mit.edu 36 1 173396113 173396114 + Frame_Shift_Ins INS - TG TG novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . UBE4B 10277 broad.mit.edu 36 1 10129711 10129711 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105562 exon19 c.G2567A p.R856H . . . COL11A1 1301 broad.mit.edu 36 1 103225851 103225851 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001854 exon30 c.G2428T p.D810Y . . . CASZ1 54897 broad.mit.edu 36 1 10642602 10642602 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001079843 exon6 c.G1084A p.A362T . . . PRMT6 55170 broad.mit.edu 36 1 107401301 107401301 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018137 exon1 c.A441G p.E147E . . . PRMT6 55170 broad.mit.edu 36 1 107401421 107401421 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018137 exon1 c.C561A p.A187A . . . C1orf127 148345 broad.mit.edu 36 1 10930707 10930707 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170754 exon12 c.C2072A p.P691H . . . CHI3L2 1117 broad.mit.edu 36 1 111579862 111579862 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025199 exon5 c.G322T p.G108W . . . LRIG2 9860 broad.mit.edu 36 1 113463526 113463526 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014813 exon17 c.A2829C p.K943N . . . MAGI3 260425 broad.mit.edu 36 1 114003274 114003274 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152900 exon16 c.C2679A p.R893R . . . TRIM33 51592 broad.mit.edu 36 1 114777824 114777824 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015906 exon5 c.A978G p.L326L . . . SIKE1 80143 broad.mit.edu 36 1 115123395 115123395 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025073 exon3 c.C299T p.A100V . . . SLC22A15 55356 broad.mit.edu 36 1 116371089 116371089 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018420 exon5 c.A651G p.L217L . . . MAD2L2 10459 broad.mit.edu 36 1 11657439 11657439 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006341 exon9 c.C616T p.R206C . . . ATP1A1 476 broad.mit.edu 36 1 116737064 116737064 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000701 exon11 c.C1398T p.S466S . . . CLCN6 1185 broad.mit.edu 36 1 11820993 11820993 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001286 exon21 c.G2310A p.P770P . . . PDE4DIP 9659 broad.mit.edu 36 1 143642308 143642308 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002811 exon1 c.C758A p.P253H . . . ITGA10 8515 broad.mit.edu 36 1 144239949 144239949 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003637 exon5 c.G389A p.R130H . . . BCL9 607 broad.mit.edu 36 1 145562925 145562925 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004326 exon10 c.G3822T p.Q1274H . . . BOLA1 51027 broad.mit.edu 36 1 148138495 148138495 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016074 exon2 c.C259T p.R87W . . . PLEKHO1 51177 broad.mit.edu 36 1 148398323 148398323 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016274 exon6 c.A1211G p.Y404C . . . SETDB1 9869 broad.mit.edu 36 1 149182047 149182047 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145415 exon7 c.A769G p.K257E . . . FAM63A 55793 broad.mit.edu 36 1 149236743 149236743 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018379 exon10 c.C1310T p.T437M . . . CGN 57530 broad.mit.edu 36 1 149763343 149763343 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020770 exon7 c.G1286A p.R429H . . . CELF3 11189 broad.mit.edu 36 1 149944211 149944211 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007185 exon12 c.G1328A p.G443D . . . HRNR 388697 broad.mit.edu 36 1 150457846 150457846 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009931 exon3 c.C2883T p.G961G . . . FLG 2312 broad.mit.edu 36 1 150550990 150550990 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.C2996T p.A999V . . . FLG2 388698 broad.mit.edu 36 1 150593016 150593016 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014342 exon3 c.A3870C p.E1290D . . . LCE3D 84648 broad.mit.edu 36 1 150818975 150818975 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032563 exon2 c.G62T p.C21F . . . LCE2C 353140 broad.mit.edu 36 1 150915202 150915202 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178429 exon2 c.C87T p.P29P . . . KPRP 448834 broad.mit.edu 36 1 150999045 150999045 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001025231 exon2 c.C357T p.Y119Y . . . INTS3 65123 broad.mit.edu 36 1 151996805 151996805 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023015 exon10 c.T1091C p.L364P . . . TPM3 7170 broad.mit.edu 36 1 152412022 152412022 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001043351 exon4 c.T441C p.A147A . . . ADAM15 8751 broad.mit.edu 36 1 153297057 153297057 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207195 exon14 c.A1523G p.D508G . . . EFNA3 1944 broad.mit.edu 36 1 153325255 153325255 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004952 exon4 c.C536A p.P179H . . . FDPS 2224 broad.mit.edu 36 1 153546569 153546569 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002004 exon3 c.G288A p.E96E . . . KIAA0907 22889 broad.mit.edu 36 1 154166206 154166206 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014949 exon3 c.T305C p.L102P . . . BGLAP 632 broad.mit.edu 36 1 154478665 154478665 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199173 exon1 c.C19A p.L7I . . . PEAR1 375033 broad.mit.edu 36 1 155143276 155143276 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080471 exon6 c.C624T p.P208P . . . SPTA1 6708 broad.mit.edu 36 1 156864127 156864127 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003126 exon40 c.T5576C p.M1859T . . . DARC 2532 broad.mit.edu 36 1 157442517 157442517 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002036 exon2 c.C664T p.P222S . . . KCNJ9 3765 broad.mit.edu 36 1 158320572 158320572 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004983 exon2 c.G128A p.R43H . . . ATP1A4 480 broad.mit.edu 36 1 158392495 158392495 + Missense_Mutation SNP G A A rs61734683 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144699 exon4 c.G448A p.V150I . . . HSPA6 3310 broad.mit.edu 36 1 159762466 159762466 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002155 exon1 c.G1394A p.G465D . . . NOS1AP 9722 broad.mit.edu 36 1 160390889 160390889 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164757 exon2 c.G176A p.R59Q . . . DDR2 4921 broad.mit.edu 36 1 161015092 161015092 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014796 exon18 c.T2382C p.D794D . . . ILDR2 387597 broad.mit.edu 36 1 165193852 165193852 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199351 exon2 c.G157A p.V53I . . . C1orf114 57821 broad.mit.edu 36 1 167654899 167654899 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021179 exon4 c.G1191T p.K397N . . . C1orf129 80133 broad.mit.edu 36 1 169228041 169228041 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025063 exon12 c.G1141A p.V381I . . . METTL13 51603 broad.mit.edu 36 1 170019575 170019575 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001007239 exon2 c.A226G p.N76D . . . METTL13 51603 broad.mit.edu 36 1 170023685 170023685 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014955 exon4 c.C1043T p.S348F . . . DNM3 26052 broad.mit.edu 36 1 170643576 170643576 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015569 exon21 c.G2564A p.R855H . . . TNN 63923 broad.mit.edu 36 1 173359206 173359206 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022093 exon12 c.A2698G p.M900V . . . TNR 7143 broad.mit.edu 36 1 173559172 173559172 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon23 c.C4021T p.R1341C . . . TNR 7143 broad.mit.edu 36 1 173632545 173632545 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003285 exon5 c.G998A p.R333Q . . . RASAL2 9462 broad.mit.edu 36 1 176694166 176694166 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170692 exon14 c.G3116T p.G1039V . . . RALGPS2 55103 broad.mit.edu 36 1 177120910 177120910 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152663 exon12 c.G981A p.P327P . . . TOR3A 64222 broad.mit.edu 36 1 177321573 177321573 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022371 exon3 c.C561T p.D187D . . . ABL2 27 broad.mit.edu 36 1 177343661 177343661 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168239 exon12 c.G2947T p.G983C . . . TDRD5 163589 broad.mit.edu 36 1 177828525 177828525 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199085 exon2 c.G152A p.R51Q . . . LAMC2 3918 broad.mit.edu 36 1 181461398 181461398 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018891 exon8 c.C986A p.P329H . . . GLT25D2 23127 broad.mit.edu 36 1 182272992 182272992 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015101 exon1 c.G123A p.E41E . . . HMCN1 83872 broad.mit.edu 36 1 184373259 184373259 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon88 c.G13589T p.G4530V . . . HMCN1 83872 broad.mit.edu 36 1 184425517 184425517 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon107 c.C16792T p.R5598X . . . PTGS2 5743 broad.mit.edu 36 1 184910431 184910431 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000963 exon10 c.C1492G p.P498A . . . IGSF21 84966 broad.mit.edu 36 1 18577403 18577403 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032880 exon10 c.C1400T p.T467M IGSF21,large_intestine,colon,Substitution - Missense,0 . . FAM5C 339479 broad.mit.edu 36 1 188334165 188334165 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199051 exon8 c.A1907G p.N636S . . . CFHR2 3080 broad.mit.edu 36 1 195194709 195194709 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005666 exon5 c.A689C p.Y230S . . . DENND1B 163486 broad.mit.edu 36 1 195881449 195881449 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195215 exon9 c.C555T p.P185P . . . TNNT2 7139 broad.mit.edu 36 1 199594994 199594994 + Silent SNP G A A rs45503195 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000364 exon16 c.C855T p.R285R . . . LMOD1 25802 broad.mit.edu 36 1 200182007 200182007 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012134 exon1 c.A85C p.M29L . . . OTUD3 23252 broad.mit.edu 36 1 20103419 20103419 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015207 exon5 c.G679A p.D227N . . . KDM5B 10765 broad.mit.edu 36 1 201043929 201043929 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006618 exon1 c.C128A p.A43E . . . FMOD 2331 broad.mit.edu 36 1 201583706 201583706 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002023 exon2 c.C316T p.R106C . . . NFASC 23114 broad.mit.edu 36 1 203215199 203215199 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160331 exon17 c.G2098A p.V700I . . . PM20D1 148811 broad.mit.edu 36 1 204085711 204085711 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152491 exon1 c.G113A p.R38Q . . . SRGAP2 23380 broad.mit.edu 36 1 204632822 204632822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170637 exon3 c.C380T p.S127L . . . CR1 1378 broad.mit.edu 36 1 205849653 205849653 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000651 exon37 c.A6292T p.R2098W . . . CD34 947 broad.mit.edu 36 1 206129171 206129171 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001773 exon6 c.C765T p.S255S . . . FAM43B 163933 broad.mit.edu 36 1 20752146 20752146 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207334 exon1 c.G93A p.S31S . . . TRAF5 7188 broad.mit.edu 36 1 209601070 209601070 + Silent SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004619 exon7 c.T639G p.A213A . . . EIF4G3 8672 broad.mit.edu 36 1 21140602 21140602 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003760 exon9 c.A1464G p.Q488Q . . . RPS6KC1 26750 broad.mit.edu 36 1 211481303 211481303 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012424 exon11 c.T1861A p.L621M . . . RPS6KC1 26750 broad.mit.edu 36 1 211482598 211482598 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012424 exon12 c.C2885T p.A962V . . . SPATA17 128153 broad.mit.edu 36 1 216022202 216022202 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138796 exon8 c.C787T p.R263W . . . DUSP10 11221 broad.mit.edu 36 1 219946339 219946339 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007207 exon3 c.G904A p.A302T . . . HSPG2 3339 broad.mit.edu 36 1 22073783 22073783 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005529 exon27 c.G3441A p.T1147T . . . C1orf65 164127 broad.mit.edu 36 1 221635096 221635096 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152610 exon1 c.G1656A p.K552K . . . URB2 9816 broad.mit.edu 36 1 227845956 227845956 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014777 exon5 c.T3688G p.L1230V . . . PGBD5 79605 broad.mit.edu 36 1 228535224 228535224 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024554 exon5 c.C1055T p.P352L . . . COG2 22796 broad.mit.edu 36 1 228893878 228893878 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007357 exon17 c.A2060G p.D687G . . . DISC1 27185 broad.mit.edu 36 1 229969517 229969517 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164539 exon5 c.G1277A p.G426E . . . SIPA1L2 57568 broad.mit.edu 36 1 230648110 230648110 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020808 exon9 c.C3141T p.L1047L . . . PCNXL2 80003 broad.mit.edu 36 1 231401355 231401355 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014801 exon15 c.G3019A p.V1007I . . . NID1 4811 broad.mit.edu 36 1 234223669 234223669 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002508 exon13 c.C2654T p.A885V . . . FMN2 56776 broad.mit.edu 36 1 238436991 238436991 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020066 exon5 c.C2256T p.G752G . . . CHML 1122 broad.mit.edu 36 1 239864718 239864718 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001821 exon1 c.A974G p.Y325C . . . CHML 1122 broad.mit.edu 36 1 239865396 239865396 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001821 exon1 c.C296G p.T99R . . . CEP170 9859 broad.mit.edu 36 1 241394929 241394929 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042405 exon12 c.G2662A p.E888K . . . AHCTF1 25909 broad.mit.edu 36 1 245081217 245081217 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015446 exon33 c.G4741A p.D1581N . . . OR2M7 391196 broad.mit.edu 36 1 246553719 246553719 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004691 exon1 c.T775C p.C259R . . . RUNX3 864 broad.mit.edu 36 1 25101488 25101488 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031680 exon6 c.C1002T p.S334S . . . RUNX3 864 broad.mit.edu 36 1 25106427 25106427 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031680 exon5 c.C655T p.R219C . . . RUNX3 864 broad.mit.edu 36 1 25126713 25126713 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031680 exon3 c.C420T p.A140A . . . RHCE 6006 broad.mit.edu 36 1 25591155 25591155 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020485 exon4 c.C551T p.A184V . . . MAN1C1 57134 broad.mit.edu 36 1 25945859 25945859 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020379 exon3 c.G751A p.V251M . . . PAQR7 164091 broad.mit.edu 36 1 26062707 26062707 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178422 exon2 c.G211A p.E71K . . . CATSPER4 378807 broad.mit.edu 36 1 26399135 26399135 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198137 exon7 c.A986G p.E329G . . . ARID1A 8289 broad.mit.edu 36 1 26930607 26930607 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006015 exon3 c.G1728T p.Q576H . . . MAP3K6 9064 broad.mit.edu 36 1 27557905 27557905 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004672 exon19 c.G2465A p.G822D . . . XKR8 55113 broad.mit.edu 36 1 28166255 28166255 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018053 exon3 c.T1145C p.F382S . . . MED18 54797 broad.mit.edu 36 1 28533851 28533851 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017638 exon3 c.G410A p.R137H . . . MARCKSL1 65108 broad.mit.edu 36 1 32572893 32572893 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023009 exon2 c.G480T p.E160D . . . SYNC 81493 broad.mit.edu 36 1 32933166 32933166 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001161708 exon2 c.G1120A p.A374T . . . WDR8 49856 broad.mit.edu 36 1 3553119 3553119 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017818 exon3 c.C310T p.R104C . . . PSMB2 5690 broad.mit.edu 36 1 35847469 35847469 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199779 exon4 c.T338C p.L113P . . . EIF2C4 192670 broad.mit.edu 36 1 36055178 36055178 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017629 exon2 c.A128T p.D43V . . . EIF2C3 192669 broad.mit.edu 36 1 36242634 36242634 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177422 exon4 c.A62G p.H21R . . . THRAP3 9967 broad.mit.edu 36 1 36527308 36527308 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005119 exon5 c.C1101T p.T367T . . . SNIP1 79753 broad.mit.edu 36 1 37778793 37778793 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024700 exon3 c.G478A p.G160R . . . INPP5B 3633 broad.mit.edu 36 1 38182078 38182078 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005540 exon4 c.C227T p.S76L . . . SMAP2 64744 broad.mit.edu 36 1 40655196 40655196 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198979 exon9 c.G990A p.M330I . . . HIVEP3 59269 broad.mit.edu 36 1 41820391 41820391 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024503 exon4 c.C2665T p.R889C . . . PPCS 79717 broad.mit.edu 36 1 42697957 42697957 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001077447 exon3 c.G190A p.A64T . . . CDC20 991 broad.mit.edu 36 1 43601329 43601329 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001255 exon11 c.G1442A p.R481Q . . . KIAA0467 23334 broad.mit.edu 36 1 43680050 43680050 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015284 exon40 c.C5019A p.T1673T . . . KDM4A 9682 broad.mit.edu 36 1 43898593 43898593 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014663 exon4 c.G352A p.E118K . . . PLK3 1263 broad.mit.edu 36 1 45041530 45041530 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004073 exon8 c.T952C p.Y318H . . . PTCH2 8643 broad.mit.edu 36 1 45065508 45065508 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166292 exon16 c.G2432A p.R811H . . . TESK2 10420 broad.mit.edu 36 1 45583582 45583582 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007170 exon11 c.C1233T p.G411G . . . MMACHC 25974 broad.mit.edu 36 1 45745698 45745698 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015506 exon2 c.G165A p.T55T . . . RAD54L 8438 broad.mit.edu 36 1 46511929 46511929 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142548 exon15 c.T1533C p.R511R . . . FAAH 2166 broad.mit.edu 36 1 46651733 46651733 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001441 exon15 c.G1639A p.V547M . . . C1orf175 374977 broad.mit.edu 36 1 54947291 54947291 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039464 exon23 c.C3684T p.C1228C . . . C8B 732 broad.mit.edu 36 1 57195162 57195162 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000066 exon3 c.G259A p.A87T . . . CHD5 26038 broad.mit.edu 36 1 6124810 6124810 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015557 exon15 c.G2401A p.A801T . . . GPR153 387509 broad.mit.edu 36 1 6233190 6233190 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207370 exon5 c.C1061T p.A354V . . . RAVER2 55225 broad.mit.edu 36 1 65045742 65045742 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018211 exon9 c.A1638G p.S546S . . . RAVER2 55225 broad.mit.edu 36 1 65053101 65053101 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018211 exon11 c.A1880G p.D627G . . . CAMTA1 23261 broad.mit.edu 36 1 7623059 7623059 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015215 exon7 c.G523A p.V175I . . . CAMTA1 23261 broad.mit.edu 36 1 7719973 7719973 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015215 exon15 c.G3414A p.S1138S . . . ERRFI1 54206 broad.mit.edu 36 1 7996515 7996515 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018948 exon4 c.G731A p.R244Q . . . BCL10 8915 broad.mit.edu 36 1 85506111 85506111 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003921 exon3 c.G489A p.T163T . . . SAMD11 148398 broad.mit.edu 36 1 864310 864310 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152486 exon6 c.G458A p.R153H . . . SH3GLB1 51100 broad.mit.edu 36 1 86972881 86972881 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016009 exon6 c.G579T p.Q193H . . . GBP1 2633 broad.mit.edu 36 1 89297164 89297164 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002053 exon5 c.A579G p.G193G . . . ZNF644 84146 broad.mit.edu 36 1 91176723 91176723 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201269 exon3 c.A2776T p.S926C . . . HFM1 164045 broad.mit.edu 36 1 91557281 91557281 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017975 exon25 c.T2754A p.C918X . . . H6PD 9563 broad.mit.edu 36 1 9246502 9246502 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004285 exon5 c.C1363T p.R455W . . . GFI1 2672 broad.mit.edu 36 1 92721572 92721572 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127215 exon2 c.C61A p.P21T . . . ARHGAP29 9411 broad.mit.edu 36 1 94423571 94423571 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004815 exon17 c.C1835T p.T612I . . . CCDC76 54482 broad.mit.edu 36 1 100379117 100379117 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019083 exon7 c.623delA p.E208fs . . . FNDC7 163479 broad.mit.edu 36 1 109077661 109077661 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144937 exon10 c.2124delA p.P708fs . . . ZNF687 57592 broad.mit.edu 36 1 149527703 149527703 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020832 exon3 c.2191delC p.P731fs . . . USF1 7391 broad.mit.edu 36 1 159278148 159278148 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007122 exon6 c.389delG p.G130fs . . . PRDX6 9588 broad.mit.edu 36 1 171721241 171721241 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004905 exon3 c.371delA p.E124fs . . . HMCN1 83872 broad.mit.edu 36 1 184235941 184235941 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon26 c.4016delT p.V1339fs . . . TPR 7175 broad.mit.edu 36 1 184558153 184558153 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003292 exon45 c.6381delT p.F2127fs . . . ASPM 259266 broad.mit.edu 36 1 195357913 195357913 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018136 exon15 c.3740delA p.K1247fs . . . ZC3H11A 9877 broad.mit.edu 36 1 202083213 202083213 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014827 exon15 c.1321delA p.K441fs . . . MTF1 4520 broad.mit.edu 36 1 38060762 38060762 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005955 exon9 c.1385delC p.P462fs . . . FUBP1 8880 broad.mit.edu 36 1 78202566 78202566 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003902 exon11 c.901delA p.I301fs . . . SNAP25 6616 broad.mit.edu 36 20 10225646 10225646 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130811 exon6 c.C355T p.R119C . . . JAG1 182 broad.mit.edu 36 20 10577720 10577720 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000214 exon11 c.G1384A p.A462T . . . ISM1 140862 broad.mit.edu 36 20 13227713 13227713 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080826 exon6 c.G1002A p.T334T . . . C20orf7 79133 broad.mit.edu 36 20 13713886 13713886 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001039375 exon1 c.T172C p.W58R . . . SIRPB1 10326 broad.mit.edu 36 20 1500456 1500456 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006065 exon3 c.G661A p.V221I . . . BANF2 140836 broad.mit.edu 36 20 17664439 17664439 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178477 exon4 c.T256C p.C86R . . . CRNKL1 51340 broad.mit.edu 36 20 19968253 19968253 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016652 exon12 c.G2028T p.E676D . . . XRN2 22803 broad.mit.edu 36 20 21275098 21275098 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012255 exon17 c.T1575C p.F525F . . . NKX2-2 4821 broad.mit.edu 36 20 21442072 21442072 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002509 exon1 c.G236A p.S79N . . . SSTR4 6754 broad.mit.edu 36 20 22964593 22964593 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001052 exon1 c.G473A p.R158Q . . . CD93 22918 broad.mit.edu 36 20 23014727 23014727 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012072 exon1 c.G103A p.A35T . . . C20orf3 57136 broad.mit.edu 36 20 24897640 24897640 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020531 exon8 c.C929A p.P310H . . . GINS1 9837 broad.mit.edu 36 20 25346741 25346741 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021067 exon4 c.G240A p.L80L . . . BPIL1 80341 broad.mit.edu 36 20 31065278 31065278 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025227 exon5 c.G310A p.A104T . . . AHCY 191 broad.mit.edu 36 20 32342070 32342070 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000687 exon7 c.G802C p.E268Q . . . GGT7 2686 broad.mit.edu 36 20 32903711 32903711 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178026 exon12 c.G1495A p.G499S . . . MYH7B 57644 broad.mit.edu 36 20 33029459 33029459 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020884 exon5 c.G116A p.S39N . . . UQCC 55245 broad.mit.edu 36 20 33355242 33355242 + Silent SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018244 exon10 c.A810C p.T270T . . . CEP250 11190 broad.mit.edu 36 20 33562633 33562633 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007186 exon35 c.T7093C p.L2365L . . . EPB41L1 2036 broad.mit.edu 36 20 34261049 34261049 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012156 exon15 c.G1894A p.A632T . . . ATRN 8455 broad.mit.edu 36 20 3519903 3519903 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139322 exon19 c.C3272G p.T1091S . . . TTI1 9675 broad.mit.edu 36 20 36075245 36075245 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014657 exon3 c.T388C p.L130L . . . ADA 100 broad.mit.edu 36 20 42682377 42682377 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000022 exon11 c.G1055T p.G352V . . . KCNK15 60598 broad.mit.edu 36 20 42812530 42812530 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022358 exon2 c.C630T p.S210S . . . SEMG1 6406 broad.mit.edu 36 20 43270035 43270035 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003007 exon2 c.A683C p.E228A . . . RBPJL 11317 broad.mit.edu 36 20 43376547 43376547 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014276 exon9 c.G948A p.Q316Q . . . RBPJL 11317 broad.mit.edu 36 20 43378980 43378980 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014276 exon12 c.G1521A p.T507T . . . MMP9 4318 broad.mit.edu 36 20 44073748 44073748 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004994 exon6 c.G952A p.A318T . . . NCOA5 57727 broad.mit.edu 36 20 44125438 44125438 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020967 exon7 c.G1118T p.R373L . . . ZNF334 55713 broad.mit.edu 36 20 44563380 44563380 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018102 exon5 c.T2005G p.S669A . . . ZFP64 55734 broad.mit.edu 36 20 50134923 50134923 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199427 exon9 c.C1518T p.S506S . . . ZNF831 128611 broad.mit.edu 36 20 57202510 57202510 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178457 exon1 c.A3041T p.Q1014L . . . CDH4 1002 broad.mit.edu 36 20 59781617 59781617 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001794 exon4 c.C560T p.P187L . . . GMEB2 26205 broad.mit.edu 36 20 61697448 61697448 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012384 exon6 c.C578T p.T193M . . . ZBTB46 140685 broad.mit.edu 36 20 61892094 61892094 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025224 exon2 c.C461T p.T154M . . . C20orf103 24141 broad.mit.edu 36 20 9446833 9446833 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199897 exon4 c.A490C p.I164L . . . LPIN3 64900 broad.mit.edu 36 20 39420035 39420035 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022896 exon17 c.2139delC p.L713fs . . . NEURL2 140825 broad.mit.edu 36 20 43952455 43952455 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080749 exon1 c.583delT p.C195fs . . . STX16 8675 broad.mit.edu 36 20 56679005 56679005 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003763 exon5 c.525delT p.H175fs . . . KRTAP13-1 140258 broad.mit.edu 36 21 30690483 30690483 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181599 exon1 c.T208C p.Y70H . . . TIAM1 7074 broad.mit.edu 36 21 31414991 31414991 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003253 exon29 c.C4342A p.R1448R . . . TIAM1 7074 broad.mit.edu 36 21 31430188 31430188 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003253 exon24 c.G3817A p.V1273M . . . ITSN1 6453 broad.mit.edu 36 21 34179279 34179279 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003024 exon37 c.C4741T p.R1581C . . . CHAF1B 8208 broad.mit.edu 36 21 36710461 36710461 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005441 exon14 c.A1607G p.Q536R . . . KCNJ15 3772 broad.mit.edu 36 21 38593345 38593345 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170736 exon3 c.G292A p.G98S . . . DSCAM 1826 broad.mit.edu 36 21 40438510 40438510 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001389 exon17 c.C3037T p.Q1013X . . . RIPK4 54101 broad.mit.edu 36 21 42039862 42039862 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020639 exon5 c.G812A p.R271Q . . . SLC37A1 54020 broad.mit.edu 36 21 42852198 42852198 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018964 exon12 c.T911C p.V304A . . . PWP2 5822 broad.mit.edu 36 21 44368936 44368936 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005049 exon15 c.C1865T p.A622V . . . ADARB1 104 broad.mit.edu 36 21 45420601 45420601 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015834 exon4 c.C557T p.A186V . . . BACH1 571 broad.mit.edu 36 21 29620442 29620442 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206866 exon3 c.426delA p.R142fs . . . NCRNA00175 378832 broad.mit.edu 36 21 45666799 45666799 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . PI4KA 5297 broad.mit.edu 36 22 19480562 19480562 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058004 exon18 c.G1975A p.A659T . . . LZTR1 8216 broad.mit.edu 36 22 19675925 19675925 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006767 exon9 c.G800A p.R267H . . . TOP3B 8940 broad.mit.edu 36 22 20656264 20656264 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003935 exon5 c.G369T p.E123D . . . ZNF280B 140883 broad.mit.edu 36 22 21172637 21172637 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080764 exon4 c.G1087A p.E363K . . . CABIN1 23523 broad.mit.edu 36 22 22902103 22902103 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199281 exon35 c.C6065T p.A2022V . . . SEZ6L 23544 broad.mit.edu 36 22 25073798 25073798 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184776 exon11 c.G2326A p.G776S . . . PITPNB 23760 broad.mit.edu 36 22 26584426 26584426 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012399 exon10 c.G717A p.T239T . . . NEFH 4744 broad.mit.edu 36 22 28216319 28216319 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021076 exon4 c.C2690A p.A897D . . . TBC1D10A 83874 broad.mit.edu 36 22 29020043 29020043 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031937 exon7 c.G762A p.P254P . . . GAL3ST1 9514 broad.mit.edu 36 22 29281873 29281873 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004861 exon4 c.T339C p.N113N . . . SLC5A1 6523 broad.mit.edu 36 22 30810499 30810499 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000343 exon8 c.T738C p.D246D . . . SYN3 8224 broad.mit.edu 36 22 31732393 31732393 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135774 exon2 c.G255A p.T85T . . . HMGXB4 10042 broad.mit.edu 36 22 34019038 34019038 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003681 exon10 c.T1692C p.C564C . . . RBFOX2 23543 broad.mit.edu 36 22 34494337 34494337 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001082579 exon6 c.C666T p.F222F . . . CSF2RB 1439 broad.mit.edu 36 22 35663519 35663519 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000395 exon14 c.G1723T p.A575S . . . RAC2 5880 broad.mit.edu 36 22 35958787 35958787 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002872 exon3 c.G225A p.T75T . . . CARD10 29775 broad.mit.edu 36 22 36230613 36230613 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014550 exon8 c.T1493C p.M498T . . . C22orf23 84645 broad.mit.edu 36 22 36670139 36670139 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032561 exon7 c.G643A p.A215T . . . SOX10 6663 broad.mit.edu 36 22 36700114 36700114 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006941 exon4 c.G735A p.P245P . . . RPS19BP1 91582 broad.mit.edu 36 22 38255548 38255548 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194326 exon4 c.G306T p.K102N . . . CACNA1I 8911 broad.mit.edu 36 22 38399934 38399935 + Missense_Mutation DNP GC CT CT novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 GC GC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021096 exon29 c.4804_4805CT . . . . GRAP2 9402 broad.mit.edu 36 22 38694082 38694082 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004810 exon6 c.C550T p.R184W . . . ADSL 158 broad.mit.edu 36 22 39087447 39087447 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000026 exon9 c.C872T p.A291V . . . MCHR1 2847 broad.mit.edu 36 22 39407670 39407670 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005297 exon2 c.C1061T p.P354L . . . NUP50 10762 broad.mit.edu 36 22 43952811 43952811 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007172 exon5 c.C369A p.T123T . . . WNT7B 7477 broad.mit.edu 36 22 44724488 44724488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058238 exon2 c.G274A p.V92I . . . CELSR1 9620 broad.mit.edu 36 22 45213948 45213948 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014246 exon3 c.G4208A p.R1403H . . . MOV10L1 54456 broad.mit.edu 36 22 48931400 48931400 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164104 exon21 c.C2837T p.A946V . . . PLXNB2 23654 broad.mit.edu 36 22 49061107 49061107 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012401 exon24 c.G4113A p.T1371T . . . CECR5 27440 broad.mit.edu 36 22 15999152 15999152 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033070 exon8 c.1031delG p.G344fs . . . CSF2RB 1439 broad.mit.edu 36 22 35663578 35663578 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000395 exon14 c.1782delG p.L594fs . . . TTN 7273 broad.mit.edu 36 2 179343402 179343403 + Frame_Shift_Ins INS - CT CT novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_133432 exon34 c.8224_8225insAG p.A2742fs . . . CASP8 841 broad.mit.edu 36 2 201859498 201859499 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080125 exon9 c.1553_1554insG p.M518fs . . . ITSN2 50618 broad.mit.edu 36 2 24338102 24338103 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147152 exon21 c.2369_2370insA p.T790fs . . . OXER1 165140 broad.mit.edu 36 2 42844592 42844593 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148962 exon1 c.232_233insG p.S78fs . . . C2orf55 343990 broad.mit.edu 36 2 98815400 98815401 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207362 exon5 c.383_384insA p.I128fs . . . TBC1D8 11138 broad.mit.edu 36 2 101021507 101021507 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102426 exon7 c.C1078T p.H360Y . . . SLC5A7 60482 broad.mit.edu 36 2 107971071 107971071 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021815 exon2 c.G28A p.A10T . . . PDIA6 10130 broad.mit.edu 36 2 10846478 10846478 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005742 exon9 c.T921C p.D307D . . . PSD4 23550 broad.mit.edu 36 2 113672915 113672915 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012455 exon15 c.C2752A p.P918T . . . FOXD4L1 200350 broad.mit.edu 36 2 113973490 113973490 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012184 exon1 c.C187T p.R63W . . . NTSR2 23620 broad.mit.edu 36 2 11717629 11717629 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012344 exon3 c.C980T p.A327V . . . LPIN1 23175 broad.mit.edu 36 2 11823228 11823228 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon2 c.G110A p.R37H . . . LPIN1 23175 broad.mit.edu 36 2 11823294 11823294 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145693 exon2 c.G176A p.R59H . . . CLASP1 23332 broad.mit.edu 36 2 121841761 121841761 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142274 exon33 c.G3558A p.P1186P . . . CNTNAP5 129684 broad.mit.edu 36 2 125238140 125238140 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130773 exon16 c.G2476A p.G826R . . . GYPC 2995 broad.mit.edu 36 2 127130342 127130342 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016815 exon1 c.G33A p.A11A . . . BIN1 274 broad.mit.edu 36 2 127524523 127524523 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139348 exon14 c.C1285A p.Q429K . . . CCNT2 905 broad.mit.edu 36 2 135427712 135427712 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058241 exon9 c.T1217A p.V406D . . . ZRANB3 84083 broad.mit.edu 36 2 135789536 135789536 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032143 exon7 c.G712A p.G238R . . . THSD7B 80731 broad.mit.edu 36 2 137716561 137716561 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080427 exon9 c.A2122T p.I708F . . . NEB 4703 broad.mit.edu 36 2 152191881 152191881 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon70 c.G10228T p.A3410S . . . NEB 4703 broad.mit.edu 36 2 152244734 152244734 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon31 c.C3091T p.P1031S . . . NEB 4703 broad.mit.edu 36 2 152289046 152289046 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164507 exon8 c.G586A p.V196I . . . GALNT5 11227 broad.mit.edu 36 2 157823765 157823765 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014568 exon1 c.G925T p.G309W . . . PLA2R1 22925 broad.mit.edu 36 2 160552087 160552087 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007366 exon12 c.A1863G p.R621R . . . SCN3A 6328 broad.mit.edu 36 2 165694920 165694920 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006922 exon17 c.G2698A p.G900S . . . SCN2A 6326 broad.mit.edu 36 2 165954110 165954110 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040143 exon26 c.G5548A p.D1850N . . . SCN7A 6332 broad.mit.edu 36 2 167006405 167006405 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002976 exon14 c.T1904C p.F635S . . . LRP2 4036 broad.mit.edu 36 2 169820942 169820942 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon19 c.G2690T p.S897I . . . CDCA7 83879 broad.mit.edu 36 2 173936364 173936364 + Silent SNP C T T rs35285795 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031942 exon4 c.C549T p.S183S . . . AGPS 8540 broad.mit.edu 36 2 178034980 178034980 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003659 exon9 c.T984C p.N328N . . . TTN 7273 broad.mit.edu 36 2 179141837 179141837 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon154 c.A50072G p.Q16691R . . . TTN 7273 broad.mit.edu 36 2 179253278 179253278 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon136 c.C29634T p.V9878V . . . TTN 7273 broad.mit.edu 36 2 179313078 179313078 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003319 exon45 c.A12038G p.D4013G . . . TTN 7273 broad.mit.edu 36 2 179323110 179323110 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133379 exon46 c.C12262A p.P4088T . . . TTN 7273 broad.mit.edu 36 2 179330591 179330591 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133432 exon44 c.C10463A p.A3488D . . . CWC22 57703 broad.mit.edu 36 2 180546725 180546725 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020943 exon7 c.T631G p.F211V . . . SSFA2 6744 broad.mit.edu 36 2 182494934 182494934 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006751 exon16 c.G3225A p.M1075I . . . NT5C1B 93034 broad.mit.edu 36 2 18600051 18600051 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020905 exon2 c.G898T p.G300X . . . COL3A1 1281 broad.mit.edu 36 2 189574553 189574553 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000090 exon34 c.G2384A p.G795D . . . MYO1B 4430 broad.mit.edu 36 2 191942579 191942579 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon12 c.C1099T p.R367X . . . ANKRD44 91526 broad.mit.edu 36 2 197586534 197586534 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195144 exon18 c.G1870A p.A624T . . . SATB2 23314 broad.mit.edu 36 2 200006442 200006442 + Silent SNP G A A rs34311963 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172509 exon3 c.C210T p.D70D . . . AOX1 316 broad.mit.edu 36 2 201215732 201215732 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001159 exon25 c.C2810T p.T937M . . . CLK1 1195 broad.mit.edu 36 2 201433148 201433148 + De_novo_Start_OutOfFrame SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001162407 exon4 c.G552T p.E184D . . . ALS2 57679 broad.mit.edu 36 2 202327474 202327474 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020919 exon6 c.C1637A p.P546H . . . FAM117B 150864 broad.mit.edu 36 2 203328581 203328581 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173511 exon5 c.G1036A p.V346M . . . NBEAL1 65065 broad.mit.edu 36 2 203761530 203761530 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114132 exon44 c.A6709G p.N2237D . . . ADAM23 8745 broad.mit.edu 36 2 207140240 207140240 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003812 exon15 c.A1443T p.R481S . . . IDH1 3417 broad.mit.edu 36 2 208816550 208816550 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005896 exon6 c.A544T p.M182L . . . CPS1 1373 broad.mit.edu 36 2 211149368 211149368 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001875 exon3 c.C290A p.A97D . . . ERBB4 2066 broad.mit.edu 36 2 212278317 212278317 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005235 exon10 c.A1169T p.N390I . . . MARCH4 57574 broad.mit.edu 36 2 216850674 216850674 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020814 exon3 c.C831T p.Y277Y . . . STK11IP 114790 broad.mit.edu 36 2 220174352 220174352 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052902 exon3 c.T246C p.V82V . . . FARSB 10056 broad.mit.edu 36 2 223213872 223213872 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005687 exon4 c.C292T p.R98W . . . FARSB 10056 broad.mit.edu 36 2 223228993 223228993 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005687 exon1 c.T44C p.L15P . . . IRS1 3667 broad.mit.edu 36 2 227371216 227371216 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005544 exon1 c.A483C p.K161N . . . COL4A4 1286 broad.mit.edu 36 2 227687603 227687603 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000092 exon8 c.C543A p.A181A . . . SLC19A3 80704 broad.mit.edu 36 2 228260507 228260507 + Silent SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025243 exon6 c.A1341T p.A447A . . . B3GNT7 93010 broad.mit.edu 36 2 231970696 231970696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_145236 exon2 c.G22A p.V8I . . . GIGYF2 26058 broad.mit.edu 36 2 233406023 233406023 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103148 exon21 c.G2724A p.Q908Q . . . INPP5D 3635 broad.mit.edu 36 2 233736541 233736541 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005541 exon7 c.G882A p.K294K . . . UGT1A1 54658 broad.mit.edu 36 2 234333862 234333862 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000463 exon1 c.G190A p.A64T . . . ILKAP 80895 broad.mit.edu 36 2 238744326 238744326 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030768 exon11 c.C1035T p.L345L . . . UBXN2A 165324 broad.mit.edu 36 2 24053382 24053382 + Missense_Mutation SNP G A A rs13386425 byHapMap TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181713 exon4 c.G220A p.V74I . . . HDLBP 3069 broad.mit.edu 36 2 241850987 241850987 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005336 exon5 c.A262G p.K88E . . . NCOA1 8648 broad.mit.edu 36 2 24804691 24804691 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003743 exon14 c.A2728G p.S910G . . . OTOF 9381 broad.mit.edu 36 2 26540459 26540459 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194323 exon23 c.C2679T p.D893D . . . IFT172 26160 broad.mit.edu 36 2 27537398 27537398 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015662 exon23 c.G2509A p.A837T . . . ALK 238 broad.mit.edu 36 2 29316167 29316167 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004304 exon13 c.C2238T p.G746G . . . LBH 81606 broad.mit.edu 36 2 30333852 30333852 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030915 exon3 c.G179A p.R60H . . . GALNT14 79623 broad.mit.edu 36 2 31069368 31069368 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024572 exon2 c.G139A p.A47T . . . SPAST 6683 broad.mit.edu 36 2 32205584 32205584 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199436 exon7 c.A1066G p.K356E . . . BIRC6 57448 broad.mit.edu 36 2 32604167 32604167 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon59 c.C11888A p.P3963Q . . . BIRC6 57448 broad.mit.edu 36 2 32653808 32653808 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016252 exon66 c.T13226C p.V4409A . . . LTBP1 4052 broad.mit.edu 36 2 33099534 33099534 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206943 exon3 c.G620C p.C207S . . . CEBPZ 10153 broad.mit.edu 36 2 37309264 37309264 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005760 exon2 c.T576C p.Y192Y . . . SOS1 6654 broad.mit.edu 36 2 39103863 39103863 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005633 exon10 c.G1210A p.A404T . . . MAP4K3 8491 broad.mit.edu 36 2 39380421 39380421 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003618 exon16 c.G1145A p.G382E . . . MAP4K3 8491 broad.mit.edu 36 2 39424094 39424094 + Silent SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003618 exon4 c.A249T p.R83R . . . ZFP36L2 678 broad.mit.edu 36 2 43306126 43306126 + Silent SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006887 exon2 c.C321G p.G107G . . . LRPPRC 10128 broad.mit.edu 36 2 44054802 44054802 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133259 exon9 c.T1146C p.T382T . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48662935 48662935 + Silent SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198594 exon1 c.G1659C p.A553A . . . TSPYL6 388951 broad.mit.edu 36 2 54336613 54336613 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003937 exon1 c.G180A p.A60A . . . USP34 9736 broad.mit.edu 36 2 61346712 61346712 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014709 exon42 c.C5528T p.A1843V . . . XPO1 7514 broad.mit.edu 36 2 61563060 61563060 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003400 exon23 c.T2931C p.Y977Y . . . C2orf86 51057 broad.mit.edu 36 2 63514471 63514471 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015910 exon9 c.A737G p.N246S . . . SPRED2 200734 broad.mit.edu 36 2 65425518 65425518 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181784 exon2 c.C43T p.R15C . . . ARHGAP25 9938 broad.mit.edu 36 2 68903051 68903051 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166276 exon9 c.C1255T p.P419S . . . C2orf42 54980 broad.mit.edu 36 2 70262090 70262090 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_017880 exon3 c.G532T p.G178C . . . DYSF 8291 broad.mit.edu 36 2 71763263 71763263 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130982 exon55 c.T6248C p.I2083T . . . DCTN1 1639 broad.mit.edu 36 2 74445723 74445723 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023019 exon21 c.T2781C p.S927S . . . HK2 3099 broad.mit.edu 36 2 74962374 74962374 + Silent SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000189 exon11 c.T1599G p.L533L . . . HK2 3099 broad.mit.edu 36 2 74967296 74967296 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000189 exon15 c.C2207A p.P736H . . . C2orf3 6936 broad.mit.edu 36 2 75745408 75745408 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003203 exon17 c.C2238T p.V746V . . . POLR1A 25885 broad.mit.edu 36 2 86122523 86122523 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015425 exon24 c.G3572T p.R1191M . . . RNF103 7844 broad.mit.edu 36 2 86684919 86684919 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198951 exon5 c.C1604T p.S535L . . . PROM2 150696 broad.mit.edu 36 2 95304202 95304202 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144707 exon1 c.C142A p.R48R . . . PROM2 150696 broad.mit.edu 36 2 95307451 95307451 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144707 exon8 c.A1022C p.E341A . . . LOC285033 285033 broad.mit.edu 36 2 96269864 96269864 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037228 exon1 c.C76T p.R26X . . . ANKRD39 51239 broad.mit.edu 36 2 96883870 96883870 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016466 exon2 c.C136T p.R46X . . . FAM178B 51252 broad.mit.edu 36 2 96923414 96923414 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016490 exon2 c.G72T p.K24N . . . TMEM131 23505 broad.mit.edu 36 2 97740156 97740156 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015348 exon41 c.C5490T p.G1830G . . . CNGA3 1261 broad.mit.edu 36 2 98372580 98372580 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001298 exon6 c.C477T p.I159I . . . MGAT4A 11320 broad.mit.edu 36 2 98661206 98661206 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012214 exon3 c.G255A p.K85K . . . TSGA10 80705 broad.mit.edu 36 2 99003376 99003376 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025244 exon18 c.G1616T p.R539M . . . SLC9A4 389015 broad.mit.edu 36 2 102491777 102491777 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011552 exon6 c.1441delA p.K481fs . . . CCDC148 130940 broad.mit.edu 36 2 158785463 158785463 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138803 exon11 c.1260delA p.K420fs . . . ASNSD1 54529 broad.mit.edu 36 2 190240079 190240079 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019048 exon4 c.976delT p.F326fs . . . MYO1B 4430 broad.mit.edu 36 2 191966149 191966149 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012223 exon20 c.2182delA p.K728fs . . . INO80D 54891 broad.mit.edu 36 2 206629541 206629541 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017759 exon4 c.590delC p.P197fs . . . ZDBF2 57683 broad.mit.edu 36 2 206884303 206884303 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020923 exon5 c.6806delT p.L2269fs . . . STON1-GTF2A1L 286749 broad.mit.edu 36 2 48662703 48662703 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198594 exon1 c.1427delA p.E476fs . . . SEC62 7095 broad.mit.edu 36 3 171183341 171183342 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003262 exon4 c.404_405insA p.T135fs . . . SYNPR 132204 broad.mit.edu 36 3 63441674 63441675 + Splice_Site INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . FANCD2 2177 broad.mit.edu 36 3 10110979 10110979 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033084 exon40 c.C3895T p.R1299C . . . C3orf24 115795 broad.mit.edu 36 3 10121398 10121398 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164839 exon2 c.C61T p.R21W . . . SENP7 57337 broad.mit.edu 36 3 102543257 102543257 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020654 exon15 c.C2163T p.S721S . . . NFKBIZ 64332 broad.mit.edu 36 3 103055095 103055095 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005474 exon6 c.T735C p.G245G . . . CD47 961 broad.mit.edu 36 3 109272661 109272661 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198793 exon3 c.A459G p.I153M . . . HHLA2 11148 broad.mit.edu 36 3 109555210 109555210 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007072 exon4 c.C311T p.A104V . . . BOC 91653 broad.mit.edu 36 3 114452122 114452122 + Missense_Mutation SNP C T T rs34208374 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033254 exon4 c.C128T p.A43V . . . KIAA2018 205717 broad.mit.edu 36 3 114856811 114856811 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009899 exon7 c.A6408G p.S2136S . . . ZNF80 7634 broad.mit.edu 36 3 115437961 115437961 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007136 exon1 c.C651T p.Y217Y . . . ZBTB20 26137 broad.mit.edu 36 3 115553021 115553021 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164343 exon11 c.C375T p.G125G . . . STXBP5L 9515 broad.mit.edu 36 3 122156506 122156506 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014980 exon3 c.C219T p.P73P . . . POLQ 10721 broad.mit.edu 36 3 122741002 122741002 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199420 exon4 c.G599A p.R200H . . . MYLK 4638 broad.mit.edu 36 3 124839724 124839724 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053025 exon29 c.G4845A p.A1615A . . . CHCHD6 84303 broad.mit.edu 36 3 127905906 127905906 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032343 exon1 c.C61T p.R21W . . . SEC61A1 29927 broad.mit.edu 36 3 129257071 129257071 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013336 exon3 c.T98C p.L33P . . . IFT122 55764 broad.mit.edu 36 3 130720641 130720641 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052990 exon25 c.C3063T p.S1021S . . . PLXND1 23129 broad.mit.edu 36 3 130774433 130774433 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015103 exon14 c.G2879A p.G960D . . . COL6A6 131873 broad.mit.edu 36 3 131768501 131768501 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102608 exon4 c.C1548T p.G516G . . . SRPRB 58477 broad.mit.edu 36 3 135021246 135021246 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021203 exon8 c.C762T p.D254D . . . CEP63 80254 broad.mit.edu 36 3 135751689 135751689 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042383 exon10 c.A1139T p.Q380L . . . NCK1 4690 broad.mit.edu 36 3 138129620 138129620 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006153 exon2 c.A87G p.L29L . . . ARMC8 25852 broad.mit.edu 36 3 139425218 139425218 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_213654 exon6 c.C346T p.R116C . . . TXNDC6 347736 broad.mit.edu 36 3 139507990 139507990 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178130 exon8 c.C300A p.T100T . . . PIK3CB 5291 broad.mit.edu 36 3 139960794 139960794 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006219 exon1 c.G82A p.G28S . . . CNTN6 27255 broad.mit.edu 36 3 1419145 1419145 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014461 exon22 c.G2961T p.E987D . . . ACPL2 92370 broad.mit.edu 36 3 142480982 142480982 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152282 exon6 c.A311G p.Y104C . . . ZBTB38 253461 broad.mit.edu 36 3 142643956 142643956 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080412 exon8 c.C36T p.D12D . . . PLOD2 5352 broad.mit.edu 36 3 147324697 147324697 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000935 exon2 c.T119C p.L40S . . . TM4SF1 4071 broad.mit.edu 36 3 150578005 150578005 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014220 exon1 c.C20T p.A7V . . . FAM194A 131831 broad.mit.edu 36 3 151860441 151860441 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152394 exon14 c.C1920T p.A640A . . . MED12L 116931 broad.mit.edu 36 3 152609765 152609765 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053002 exon38 c.G5760A p.R1920R . . . P2RY1 5028 broad.mit.edu 36 3 154036688 154036688 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002563 exon1 c.A427G p.T143A . . . KCNAB1 7881 broad.mit.edu 36 3 157343891 157343891 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003471 exon1 c.G230A p.G77D . . . ANKRD28 23243 broad.mit.edu 36 3 15737456 15737456 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015199 exon8 c.A876G p.L292L . . . RFTN1 23180 broad.mit.edu 36 3 16510238 16510238 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015150 exon2 c.C143T p.A48V . . . MECOM 2122 broad.mit.edu 36 3 170316395 170316395 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105077 exon8 c.G1590T p.A530A . . . CLDN11 5010 broad.mit.edu 36 3 171633135 171633135 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005602 exon3 c.T521A p.V174D . . . SLC7A14 57709 broad.mit.edu 36 3 171667777 171667777 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020949 exon8 c.G2076A p.T692T . . . TBC1D5 9779 broad.mit.edu 36 3 17393101 17393101 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134380 exon10 c.C621T p.H207H . . . PIK3CA 5290 broad.mit.edu 36 3 180434779 180434779 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006218 exon21 c.A3140G p.H1047R PIK3CA,breast,NS,Substitution - Missense,0 . . ACTL6A 86 broad.mit.edu 36 3 180774876 180774876 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178042 exon5 c.A277C p.K93Q . . . CCDC39 339829 broad.mit.edu 36 3 181855390 181855390 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181426 exon7 c.G784A p.V262I . . . EIF4G1 1981 broad.mit.edu 36 3 185520275 185520275 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182917 exon6 c.C529T p.R177C . . . CHRD 8646 broad.mit.edu 36 3 185585625 185585625 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003741 exon14 c.G1723T p.G575C . . . MAP3K13 9175 broad.mit.edu 36 3 186651788 186651788 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004721 exon7 c.C1189T p.R397X . . . ADIPOQ 9370 broad.mit.edu 36 3 188055175 188055175 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004797 exon3 c.T723C p.H241H . . . MASP1 5648 broad.mit.edu 36 3 188453780 188453780 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031849 exon6 c.A762G p.K254K . . . CPN2 1370 broad.mit.edu 36 3 195544429 195544429 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080513 exon2 c.C698A p.P233H . . . TMEM44 93109 broad.mit.edu 36 3 195819230 195819230 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138399 exon6 c.G670A p.A224T . . . ZNF385D 79750 broad.mit.edu 36 3 21437865 21437865 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024697 exon8 c.G1033C p.A345P . . . CNTN4 152330 broad.mit.edu 36 3 3060339 3060339 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175613 exon14 c.G1778T p.W593L . . . IL5RA 3568 broad.mit.edu 36 3 3114615 3114615 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000564 exon8 c.C648T p.N216N . . . SCN5A 6331 broad.mit.edu 36 3 38571011 38571011 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon26 c.A4522G p.T1508A . . . SCN5A 6331 broad.mit.edu 36 3 38576831 38576831 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099405 exon23 c.C4056T p.G1352G . . . TTC21A 199223 broad.mit.edu 36 3 39134616 39134616 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105513 exon6 c.C646T p.H216Y . . . ULK4 54986 broad.mit.edu 36 3 41721565 41721565 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017886 exon27 c.C2769T p.D923D . . . TRAK1 22906 broad.mit.edu 36 3 42239491 42239491 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042646 exon16 c.C2120T p.T707M . . . KIF15 56992 broad.mit.edu 36 3 44844764 44844764 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020242 exon24 c.A2911G p.S971G . . . NBEAL2 23218 broad.mit.edu 36 3 47018268 47018268 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015175 exon30 c.C4730T p.A1577V . . . SETD2 29072 broad.mit.edu 36 3 47137626 47137626 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014159 exon3 c.T3504C p.V1168V . . . CELSR3 1951 broad.mit.edu 36 3 48674665 48674665 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001407 exon1 c.G407A p.R136H . . . ARIH2 10425 broad.mit.edu 36 3 48940070 48940070 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006321 exon3 c.A75G p.E25E . . . USP19 10869 broad.mit.edu 36 3 49127543 49127543 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199162 exon14 c.G1998A p.A666A . . . CCDC71 64925 broad.mit.edu 36 3 49175648 49175648 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022903 exon2 c.C998T p.A333V . . . CCDC36 339834 broad.mit.edu 36 3 49269522 49269522 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178173 exon10 c.C1588T p.Q530X . . . BSN 8927 broad.mit.edu 36 3 49663338 49663338 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003458 exon4 c.G1808A p.S603N . . . IFRD2 7866 broad.mit.edu 36 3 50300663 50300663 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006764 exon12 c.G1484A p.R495Q . . . CACNA2D2 9254 broad.mit.edu 36 3 50488593 50488593 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006030 exon2 c.G248A p.G83D . . . DNAH1 25981 broad.mit.edu 36 3 52358412 52358412 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015512 exon14 c.G2462A p.R821H . . . ITIH1 3697 broad.mit.edu 36 3 52795420 52795420 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166434 exon11 c.G1237T p.G413C . . . ATXN7 6314 broad.mit.edu 36 3 63951473 63951473 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001177387 exon10 c.G1580A p.R527Q . . . LRIG1 26018 broad.mit.edu 36 3 66517364 66517364 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015541 exon14 c.G1812A p.T604T . . . PDZRN3 23024 broad.mit.edu 36 3 73515694 73515694 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015009 exon10 c.A2713T p.M905L . . . CNTN3 5067 broad.mit.edu 36 3 74429802 74429802 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020872 exon17 c.A2397C p.E799D . . . GRM7 2917 broad.mit.edu 36 3 7696740 7696740 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000844 exon9 c.A2456G p.Y819C . . . ROBO1 6091 broad.mit.edu 36 3 78878598 78878598 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002941 exon5 c.A642G p.K214K . . . ROBO1 6091 broad.mit.edu 36 3 79070569 79070569 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002941 exon4 c.G371T p.S124I . . . BRPF1 7862 broad.mit.edu 36 3 9751020 9751020 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004634 exon2 c.C196T p.R66C . . . PRRT3 285368 broad.mit.edu 36 3 9966197 9966197 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207351 exon2 c.C603T p.P201P . . . ST3GAL6 10402 broad.mit.edu 36 3 99986532 99986532 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006100 exon7 c.A389G p.K130R . . . MYLK 4638 broad.mit.edu 36 3 124940550 124940550 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_053025 exon7 c.472delG p.E158fs . . . CCDC37 348807 broad.mit.edu 36 3 127624873 127624873 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182628 exon12 c.1098delC p.I366fs . . . SLCO2A1 6578 broad.mit.edu 36 3 135146751 135146751 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005630 exon10 c.1339delG p.D447fs . . . ABCC5 10057 broad.mit.edu 36 3 185150545 185150547 + In_Frame_Del DEL AGA - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 AGA AGA AGA - AGA AGA Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005688 exon21 c.3005_3007del p.1002_1003del . . . LIPH 200879 broad.mit.edu 36 3 186719641 186719641 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_139248 exon6 c.869delA p.E290fs . . . CRYBG3 131544 broad.mit.edu 36 3 99079334 99079334 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . SNX25 83891 broad.mit.edu 36 4 186504698 186504699 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031953 exon13 c.1709_1710insA p.L570fs . . . NKX6-1 4825 broad.mit.edu 36 4 85638389 85638390 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006168 exon1 c.17_18insG p.A6fs . . . DKK2 27123 broad.mit.edu 36 4 108066484 108066484 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014421 exon2 c.G294T p.S98S . . . CCDC109B 55013 broad.mit.edu 36 4 110800954 110800954 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017918 exon3 c.A330G p.A110A . . . PITX2 5308 broad.mit.edu 36 4 111773084 111773084 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_153426 exon3 c.C48T p.G16G . . . ALPK1 80216 broad.mit.edu 36 4 113572853 113572853 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025144 exon11 c.C2701A p.L901I . . . NEUROG2 63973 broad.mit.edu 36 4 113655788 113655788 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024019 exon2 c.G293A p.R98Q . . . C4orf21 55345 broad.mit.edu 36 4 113758551 113758551 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018392 exon6 c.C2096T p.A699V . . . SPON2 10417 broad.mit.edu 36 4 1155696 1155696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199021 exon4 c.C164T p.A55V . . . PRSS12 8492 broad.mit.edu 36 4 119422664 119422664 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003619 exon13 c.G2503A p.G835R . . . KIAA1109 84162 broad.mit.edu 36 4 123476808 123476808 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon68 c.G11860T p.G3954X . . . NUDT6 11162 broad.mit.edu 36 4 124058255 124058255 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007083 exon2 c.C293A p.P98H . . . SPATA5 166378 broad.mit.edu 36 4 124069726 124069726 + Silent SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145207 exon3 c.A370C p.R124R . . . FAT4 79633 broad.mit.edu 36 4 126457844 126457844 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.C828T p.D276D . . . FAT4 79633 broad.mit.edu 36 4 126459633 126459633 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.G2617A p.V873M . . . FAT4 79633 broad.mit.edu 36 4 126591474 126591474 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon9 c.A9853G p.N3285D . . . PHF17 79960 broad.mit.edu 36 4 129992803 129992803 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199320 exon6 c.G626A p.C209Y . . . PCDH18 54510 broad.mit.edu 36 4 138671522 138671522 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019035 exon1 c.C1171T p.L391L . . . NAA15 80155 broad.mit.edu 36 4 140502464 140502464 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057175 exon14 c.G1676A p.R559K . . . TBC1D9 23158 broad.mit.edu 36 4 141779971 141779972 + Missense_Mutation DNP AC CA CA novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 AC AC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015130 exon14 c.2398_2399TG . . . . RNF150 57484 broad.mit.edu 36 4 142272932 142272932 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020724 exon1 c.G481A p.A161T . . . ANAPC10 10393 broad.mit.edu 36 4 146236696 146236696 + Silent SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014885 exon2 c.T6G p.T2T . . . ZNF827 152485 broad.mit.edu 36 4 146916409 146916409 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178835 exon10 c.A2675C p.K892T . . . DCLK2 166614 broad.mit.edu 36 4 151219705 151219705 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040260 exon1 c.G76T p.G26W . . . KIAA0922 23240 broad.mit.edu 36 4 154742836 154742836 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015196 exon22 c.G2346A p.S782S . . . PLRG1 5356 broad.mit.edu 36 4 155685063 155685063 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002669 exon7 c.C578T p.P193L . . . GUCY1A3 2982 broad.mit.edu 36 4 156851552 156851552 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130682 exon6 c.C785T p.T262I . . . TAPT1 202018 broad.mit.edu 36 4 15798983 15798983 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153365 exon5 c.A706C p.I236L . . . FSTL5 56884 broad.mit.edu 36 4 162916572 162916572 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020116 exon5 c.G514A p.D172N . . . LAP3 51056 broad.mit.edu 36 4 17199604 17199604 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015907 exon7 c.G769A p.E257K . . . NCAPG 64151 broad.mit.edu 36 4 17435718 17435718 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022346 exon10 c.G1413A p.A471A . . . ODZ3 55714 broad.mit.edu 36 4 183912694 183912694 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080477 exon21 c.G4180A p.G1394R . . . C4orf41 60684 broad.mit.edu 36 4 184855876 184855876 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199053 exon25 c.G2745A p.T915T . . . ENPP6 133121 broad.mit.edu 36 4 185311878 185311878 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153343 exon2 c.C244T p.R82C . . . SNX25 83891 broad.mit.edu 36 4 186490773 186490773 + De_novo_Start_OutOfFrame SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031953 exon10 c.G1288A p.V430M . . . UFSP2 55325 broad.mit.edu 36 4 186573956 186573956 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018359 exon5 c.G393A p.T131T . . . SORBS2 8470 broad.mit.edu 36 4 186781613 186781613 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021069 exon13 c.G1952A p.R651H . . . FAT1 2195 broad.mit.edu 36 4 187867706 187867706 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005245 exon2 c.C270T p.L90L . . . ZFYVE28 57732 broad.mit.edu 36 4 2313039 2313039 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172656 exon3 c.C282T p.H94H . . . PPARGC1A 10891 broad.mit.edu 36 4 23424754 23424754 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013261 exon8 c.C1450G p.L484V . . . SEL1L3 23231 broad.mit.edu 36 4 25369665 25369665 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015187 exon21 c.G3079A p.E1027K . . . FAM193A 8603 broad.mit.edu 36 4 2665171 2665171 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003704 exon14 c.G1991T p.R664M . . . HTT 3064 broad.mit.edu 36 4 3102818 3102818 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002111 exon15 c.G1994A p.R665H . . . HTT 3064 broad.mit.edu 36 4 3146314 3146314 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002111 exon32 c.G4235A p.R1412H . . . HTT 3064 broad.mit.edu 36 4 3200440 3200440 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002111 exon59 c.C8015T p.S2672L . . . ZNF141 7700 broad.mit.edu 36 4 356976 356976 + Silent SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003441 exon4 c.T750A p.T250T . . . WDR19 57728 broad.mit.edu 36 4 38952872 38952872 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025132 exon33 c.C3615T p.G1205G . . . ZNF721 170960 broad.mit.edu 36 4 425607 425607 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133474 exon3 c.T2649C p.H883H . . . ZBTB49 166793 broad.mit.edu 36 4 4373470 4373470 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145291 exon8 c.C1824T p.L608L . . . GABRG1 2565 broad.mit.edu 36 4 45755092 45755092 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173536 exon7 c.A815T p.Y272F . . . CORIN 10699 broad.mit.edu 36 4 47460332 47460332 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006587 exon4 c.G438C p.Q146H . . . PDGFRA 5156 broad.mit.edu 36 4 54851300 54851300 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006206 exon22 c.G2944A p.V982M . . . EVC 2121 broad.mit.edu 36 4 5846284 5846284 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153717 exon13 c.C1825T p.R609W . . . LPHN3 23284 broad.mit.edu 36 4 62281666 62281666 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015236 exon5 c.A994G p.N332D . . . KIAA0232 9778 broad.mit.edu 36 4 6911129 6911129 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014743 exon6 c.G513A p.V171V . . . CSN2 1447 broad.mit.edu 36 4 70857989 70857989 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001891 exon5 c.G267T p.V89V . . . HTN1 3346 broad.mit.edu 36 4 70955853 70955853 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002159 exon5 c.C152A p.S51X . . . RUFY3 22902 broad.mit.edu 36 4 71873422 71873422 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014961 exon11 c.G1107T p.M369I . . . ADAMTS3 9508 broad.mit.edu 36 4 73380252 73380252 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014243 exon19 c.A2706C p.Q902H . . . NAAA 27163 broad.mit.edu 36 4 77080265 77080265 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001042402 exon2 c.T284C p.F95S . . . CNOT6L 246175 broad.mit.edu 36 4 78871604 78871604 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144571 exon9 c.G985A p.A329T . . . BMP3 651 broad.mit.edu 36 4 82186450 82186450 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001201 exon2 c.A851T p.E284V . . . COPS4 51138 broad.mit.edu 36 4 84175465 84175465 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016129 exon1 c.C64A p.L22M . . . GAK 2580 broad.mit.edu 36 4 843435 843435 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005255 exon24 c.A3242G p.D1081G . . . PTPN13 5783 broad.mit.edu 36 4 87924661 87924661 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080684 exon35 c.A5471G p.N1824S . . . HSD17B13 345275 broad.mit.edu 36 4 88457322 88457322 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136230 exon2 c.C288A p.T96T . . . HERC3 8916 broad.mit.edu 36 4 89810084 89810084 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014606 exon15 c.C1684A p.L562I . . . FAM190A 401145 broad.mit.edu 36 4 91448464 91448464 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145065 exon2 c.G6A p.G2G . . . SLC2A9 56606 broad.mit.edu 36 4 9632051 9632051 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020041 exon1 c.T101G p.L34R . . . WDR1 9948 broad.mit.edu 36 4 9693768 9693768 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017491 exon10 c.C1172T p.T391I . . . TSPAN5 10098 broad.mit.edu 36 4 99618900 99618900 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005723 exon5 c.C535T p.R179X . . . ARSJ 79642 broad.mit.edu 36 4 115042943 115042943 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024590 exon2 c.1736delA p.K579fs . . . FAT4 79633 broad.mit.edu 36 4 126457897 126457897 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C - C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024582 exon1 c.881delC p.T294fs . . . DCLK2 166614 broad.mit.edu 36 4 151396782 151396782 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040260 exon16 c.2234delC p.T745fs . . . DCHS2 54798 broad.mit.edu 36 4 155438769 155438769 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017639 exon18 c.4782delC p.P1594fs . . . FAT1 2195 broad.mit.edu 36 4 187775935 187775935 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005245 exon10 c.8799delA p.Q2933fs . . . THAP9 79725 broad.mit.edu 36 4 84057406 84057406 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024672 exon5 c.1017delT p.Y339fs . . . WDFY3 23001 broad.mit.edu 36 4 85929952 85929952 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014991 exon22 c.3620delA p.N1207fs . . . ITK 3702 broad.mit.edu 36 5 156604011 156604012 + Frame_Shift_Ins INS - TG TG novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - TG - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005546 exon13 c.1394_1395insTG p.D465fs . . . DROSHA 29102 broad.mit.edu 36 5 31529078 31529079 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon12 c.1835_1836insC p.L612fs . . . RAD1 5810 broad.mit.edu 36 5 34949350 34949351 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002853 exon3 c.289_290insT p.G97fs . . . FER 2241 broad.mit.edu 36 5 108235087 108235087 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005246 exon7 c.T788C p.F263S . . . CTNND2 1501 broad.mit.edu 36 5 11075928 11075928 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon17 c.C2952T p.A984A . . . CAMK4 814 broad.mit.edu 36 5 110812799 110812799 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001744 exon7 c.C624T p.C208C . . . TSSK1B 83942 broad.mit.edu 36 5 112798039 112798039 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032028 exon1 c.G397A p.V133I . . . YTHDC2 64848 broad.mit.edu 36 5 112929547 112929547 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022828 exon21 c.T2774G p.L925R . . . SEMA6A 57556 broad.mit.edu 36 5 115810296 115810296 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020796 exon19 c.G3005A p.R1002H . . . MEGF10 84466 broad.mit.edu 36 5 126804350 126804350 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032446 exon19 c.G2254T p.G752X . . . FBN2 2201 broad.mit.edu 36 5 127901117 127901117 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001999 exon1 c.G79A p.A27T . . . SLC27A6 28965 broad.mit.edu 36 5 128348898 128348898 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017372 exon2 c.T655C p.C219R . . . ACSL6 23305 broad.mit.edu 36 5 131354544 131354544 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001009185 exon3 c.C286T p.R96W . . . PHF15 23338 broad.mit.edu 36 5 133923520 133923520 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015288 exon5 c.A413G p.D138G . . . FBXL21 26223 broad.mit.edu 36 5 135304234 135304234 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012159 exon7 c.A647G p.H216R . . . FAM13B 51306 broad.mit.edu 36 5 137374685 137374685 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016603 exon6 c.A601C p.M201L . . . WNT8A 7478 broad.mit.edu 36 5 137452606 137452606 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_058244 exon5 c.G459A p.G153G . . . DNAH5 1767 broad.mit.edu 36 5 13772090 13772090 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon72 c.G12400T p.A4134S . . . HSPA9 3313 broad.mit.edu 36 5 137919696 137919696 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004134 exon17 c.T1969C p.S657P . . . NRG2 9542 broad.mit.edu 36 5 139402391 139402391 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013981 exon1 c.C448T p.R150X . . . DNAH5 1767 broad.mit.edu 36 5 13972407 13972407 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon7 c.G853A p.A285T . . . TMCO6 55374 broad.mit.edu 36 5 140001507 140001507 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018502 exon3 c.G272A p.R91H . . . NDUFA2 4695 broad.mit.edu 36 5 140007050 140007050 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001185012 exon2 c.G183A p.V61V . . . PCDHA3 56145 broad.mit.edu 36 5 140161372 140161372 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031497 exon1 c.G406A p.A136T . . . PCDHA5 56143 broad.mit.edu 36 5 140183397 140183397 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018908 exon1 c.G1853A p.R618H . . . PCDHA6 56142 broad.mit.edu 36 5 140188015 140188015 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018909 exon1 c.T155C p.L52P . . . PCDHA7 56141 broad.mit.edu 36 5 140194292 140194292 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018910 exon1 c.G140A p.R47H . . . PCDHAC2 56134 broad.mit.edu 36 5 140328742 140328742 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018899 exon1 c.C2207T p.A736V . . . PCDHB2 56133 broad.mit.edu 36 5 140455243 140455243 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018936 exon1 c.C685T p.L229L . . . PCDHB5 26167 broad.mit.edu 36 5 140497347 140497347 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015669 exon1 c.G2147A p.S716N . . . PCDHB16 57717 broad.mit.edu 36 5 140544270 140544270 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020957 exon1 c.C1952T p.P651L . . . PCDHB14 56122 broad.mit.edu 36 5 140584642 140584642 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018934 exon1 c.C1381A p.R461S . . . PCDHB15 56121 broad.mit.edu 36 5 140606938 140606938 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018935 exon1 c.C1608T p.R536R . . . PCDHGA4 56111 broad.mit.edu 36 5 140717241 140717241 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018917 exon1 c.C2290T p.R764W . . . PCDHGA5 56110 broad.mit.edu 36 5 140726239 140726239 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032054 exon1 c.C2158T p.H720Y . . . PCDHGB5 56101 broad.mit.edu 36 5 140758951 140758951 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032099 exon1 c.C1073T p.P358L . . . PCDHGA12 26025 broad.mit.edu 36 5 140791225 140791225 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032094 exon1 c.G715A p.A239T . . . PCDHGC4 56098 broad.mit.edu 36 5 140847005 140847005 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032406 exon1 c.C2081T p.A694V . . . HDAC3 8841 broad.mit.edu 36 5 140985008 140985008 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003883 exon14 c.A1168G p.T390A . . . RBM27 54439 broad.mit.edu 36 5 145597131 145597131 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018989 exon8 c.G1222A p.V408M . . . TCERG1 10915 broad.mit.edu 36 5 145814894 145814894 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040006 exon2 c.C142T p.R48X . . . JAKMIP2 9832 broad.mit.edu 36 5 147021141 147021141 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014790 exon3 c.C190T p.R64C . . . SPINK5 11005 broad.mit.edu 36 5 147460267 147460267 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127699 exon13 c.G1150C p.E384Q . . . PDE6A 5145 broad.mit.edu 36 5 149293707 149293707 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000440 exon3 c.C696A p.N232K . . . ANXA6 309 broad.mit.edu 36 5 150482757 150482757 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001155 exon16 c.G1147A p.E383K . . . FAT2 2196 broad.mit.edu 36 5 150897697 150897697 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001447 exon11 c.C9043A p.L3015I . . . G3BP1 10146 broad.mit.edu 36 5 151163783 151163783 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005754 exon12 c.C1339T p.R447C . . . GALNT10 55568 broad.mit.edu 36 5 153654611 153654611 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198321 exon2 c.G202T p.G68W . . . GALNT10 55568 broad.mit.edu 36 5 153769309 153769309 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198321 exon9 c.G1180A p.A394T . . . KIF4B 285643 broad.mit.edu 36 5 154374822 154374822 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099293 exon1 c.C1210T p.R404C . . . HAVCR2 84868 broad.mit.edu 36 5 156466389 156466389 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032782 exon2 c.A221G p.D74G . . . CCNJL 79616 broad.mit.edu 36 5 159613319 159613319 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024565 exon7 c.G952A p.G318S . . . CCDC99 54908 broad.mit.edu 36 5 168953983 168953983 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017785 exon6 c.G689A p.R230H . . . RGS14 10636 broad.mit.edu 36 5 176727105 176727105 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006480 exon6 c.G568T p.G190X . . . ZNF354C 30832 broad.mit.edu 36 5 178438940 178438940 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014594 exon5 c.C901T p.R301X . . . ZNF354C 30832 broad.mit.edu 36 5 178439029 178439029 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014594 exon5 c.C990T p.C330C . . . TBC1D9B 23061 broad.mit.edu 36 5 179264353 179264353 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198868 exon2 c.C184A p.L62M . . . CDH18 1016 broad.mit.edu 36 5 19519249 19519249 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167667 exon12 c.C1691T p.A564V . . . PRDM9 56979 broad.mit.edu 36 5 23563514 23563514 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020227 exon11 c.C2560T p.H854Y . . . CDH10 1008 broad.mit.edu 36 5 24524003 24524003 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006727 exon12 c.T1893C p.F631F . . . DROSHA 29102 broad.mit.edu 36 5 31507928 31507928 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013235 exon16 c.C2240T p.T747M . . . TARS 6897 broad.mit.edu 36 5 33489213 33489213 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152295 exon4 c.G392A p.R131H . . . RXFP3 51289 broad.mit.edu 36 5 33972939 33972939 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016568 exon1 c.C337T p.R113C . . . NIPBL 25836 broad.mit.edu 36 5 37100527 37100527 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133433 exon47 c.A8191C p.T2731P . . . RICTOR 253260 broad.mit.edu 36 5 38980798 38980798 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152756 exon35 c.G4763T p.S1588I . . . OXCT1 5019 broad.mit.edu 36 5 41841527 41841527 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000436 exon9 c.G854A p.R285Q . . . FST 10468 broad.mit.edu 36 5 52812420 52812420 + Silent SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013409 exon1 c.G42C p.L14L . . . ARL15 54622 broad.mit.edu 36 5 53444965 53444965 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019087 exon4 c.T286C p.Y96H . . . CDC20B 166979 broad.mit.edu 36 5 54456397 54456397 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001170402 exon9 c.G1206A p.T402T . . . GPBP1 65056 broad.mit.edu 36 5 56562714 56562714 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022913 exon5 c.C220T p.R74C . . . ACTBL2 345651 broad.mit.edu 36 5 56813441 56813441 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017992 exon1 c.T851C p.M284T . . . C5orf43 643155 broad.mit.edu 36 5 60491616 60491616 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001048249 exon3 c.T140C p.M47T . . . CARTPT 9607 broad.mit.edu 36 5 71051505 71051505 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004291 exon2 c.C202T p.R68C . . . PTCD2 79810 broad.mit.edu 36 5 71662935 71662935 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024754 exon4 c.G445T p.A149S . . . ZNF366 167465 broad.mit.edu 36 5 71775442 71775442 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152625 exon5 c.G2132A p.G711D . . . TPPP 11076 broad.mit.edu 36 5 719222 719222 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007030 exon3 c.A328C p.T110P . . . HEXB 3074 broad.mit.edu 36 5 74045130 74045130 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000521 exon7 c.G815A p.R272H . . . MTRR 4552 broad.mit.edu 36 5 7942311 7942311 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002454 exon9 c.T1250C p.V417A . . . TMEM161B 153396 broad.mit.edu 36 5 87537393 87537393 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153354 exon8 c.T794A p.I265N . . . TTC37 9652 broad.mit.edu 36 5 94903363 94903363 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014639 exon6 c.T238G p.L80V . . . ELL2 22936 broad.mit.edu 36 5 95259702 95259702 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012081 exon8 c.G1523C p.G508A . . . CHD1 1105 broad.mit.edu 36 5 98240065 98240065 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001270 exon23 c.G3335A p.R1112H . . . SLCO6A1 133482 broad.mit.edu 36 5 101862380 101862380 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173488 exon1 c.68delA p.E23fs . . . APC 324 broad.mit.edu 36 5 112201730 112201730 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001127511 exon14 c.2486delA p.E829fs . . . SLC6A18 348932 broad.mit.edu 36 5 1296834 1296834 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182632 exon9 c.1296delG p.V432fs . . . FAM105A 54491 broad.mit.edu 36 5 14661915 14661915 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019018 exon7 c.686delT p.L229fs . . . RMND5B 64777 broad.mit.edu 36 5 177497748 177497749 + Frame_Shift_Del DEL GA - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 GA GA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_022762 exon3 c.22_23del p.8_8del . . . FLT4 2324 broad.mit.edu 36 5 179991354 179991354 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_182925 exon2 c.89delC p.P30fs . . . CWC27 10283 broad.mit.edu 36 5 64217115 64217115 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005869 exon11 c.1028delA p.E343fs . . . TBCA 6902 broad.mit.edu 36 5 77039864 77039864 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004607 exon2 c.118delA p.M40X . . . PAPD4 167153 broad.mit.edu 36 5 78954832 78954832 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001114394 exon4 c.229delA p.R77fs . . . MBOAT1 154141 broad.mit.edu 36 6 20260865 20260866 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080480 exon2 c.214_215insT p.G72fs . . . PKHD1 5314 broad.mit.edu 36 6 51727660 51727661 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - G - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138694 exon56 c.8678_8679insC p.H2893fs . . . PHF3 23469 broad.mit.edu 36 6 64466375 64466376 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - T - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015153 exon7 c.2903_2904insT p.S968fs . . . SIM1 6492 broad.mit.edu 36 6 101002760 101002760 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005068 exon7 c.G833A p.R278H . . . ASCC3 10973 broad.mit.edu 36 6 101354958 101354958 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006828 exon6 c.G1066T p.E356X . . . GCNT2 2651 broad.mit.edu 36 6 10637692 10637692 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145649 exon3 c.A562G p.I188V . . . PRDM1 639 broad.mit.edu 36 6 106660027 106660027 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198 exon5 c.C1299T p.G433G . . . GPR6 2830 broad.mit.edu 36 6 110407674 110407675 + Missense_Mutation DNP GG AC AC novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 GG GG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005284 exon1 c.666_667AC . . . . ERVFRDE1 405754 broad.mit.edu 36 6 11213436 11213436 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207582 exon2 c.C94T p.L32F . . . RWDD1 51389 broad.mit.edu 36 6 117008198 117008198 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015952 exon2 c.G121A p.A41T . . . GOPC 57120 broad.mit.edu 36 6 117997461 117997461 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020399 exon7 c.G1044T p.K348N . . . GJA1 2697 broad.mit.edu 36 6 121810408 121810408 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000165 exon2 c.G716A p.R239Q . . . GJA1 2697 broad.mit.edu 36 6 121810781 121810781 + Silent SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000165 exon2 c.T1089G p.P363P . . . HEY2 23493 broad.mit.edu 36 6 126121967 126121967 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012259 exon5 c.G340A p.A114T . . . KIAA0408 9729 broad.mit.edu 36 6 127809616 127809616 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014702 exon5 c.A1541G p.K514R . . . C6orf174 387104 broad.mit.edu 36 6 127838333 127838333 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012279 exon6 c.G2531A p.R844H . . . C6orf174 387104 broad.mit.edu 36 6 127878448 127878448 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012279 exon2 c.G1005A p.A335A . . . PTPRK 5796 broad.mit.edu 36 6 128581871 128581871 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002844 exon6 c.G757A p.A253T . . . TAAR5 9038 broad.mit.edu 36 6 132952477 132952477 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003967 exon1 c.G42A p.A14A . . . VNN1 8876 broad.mit.edu 36 6 133055353 133055353 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004666 exon5 c.G890T p.G297V . . . EYA4 2070 broad.mit.edu 36 6 133878265 133878265 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172103 exon16 c.A1546G p.R516G . . . GFOD1 54438 broad.mit.edu 36 6 13473092 13473092 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018988 exon2 c.C1035T p.C345C . . . GPR126 57211 broad.mit.edu 36 6 142733531 142733531 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032394 exon4 c.G977A p.S326N . . . PEX3 8504 broad.mit.edu 36 6 143835012 143835012 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003630 exon8 c.T601C p.S201P . . . UTRN 7402 broad.mit.edu 36 6 145114730 145114730 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007124 exon55 c.A8304G p.L2768L . . . SHPRH 257218 broad.mit.edu 36 6 146306536 146306536 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173082 exon9 c.T1674C p.D558D . . . AKAP12 9590 broad.mit.edu 36 6 151714886 151714886 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005100 exon4 c.G3667T p.A1223S . . . RMND1 55005 broad.mit.edu 36 6 151785384 151785384 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017909 exon8 c.T987C p.I329I . . . C6orf97 80129 broad.mit.edu 36 6 151956106 151956106 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_025059 exon8 c.A1465C p.K489Q . . . ESR1 2099 broad.mit.edu 36 6 152170894 152170894 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122740 exon2 c.T154C p.Y52H . . . TIAM2 26230 broad.mit.edu 36 6 155492405 155492405 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012454 exon3 c.T356A p.V119D . . . NOX3 50508 broad.mit.edu 36 6 155799286 155799286 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015718 exon7 c.G756T p.V252V . . . JARID2 3720 broad.mit.edu 36 6 15628297 15628297 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004973 exon18 c.G3577A p.V1193I . . . TULP4 56995 broad.mit.edu 36 6 158843858 158843858 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020245 exon13 c.G3175A p.A1059T . . . FNDC1 84624 broad.mit.edu 36 6 159556070 159556070 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032532 exon5 c.G566A p.R189H . . . FNDC1 84624 broad.mit.edu 36 6 159574296 159574296 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032532 exon11 c.G2762A p.R921Q . . . IGF2R 3482 broad.mit.edu 36 6 160368236 160368236 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000876 exon6 c.C676T p.R226W . . . LPA 4018 broad.mit.edu 36 6 160926068 160926068 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005577 exon27 c.C4289T p.A1430V . . . MAP3K4 4216 broad.mit.edu 36 6 161434043 161434043 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006724 exon14 c.G3313A p.A1105T . . . QKI 9444 broad.mit.edu 36 6 163756308 163756308 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206855 exon1 c.G93T p.L31L . . . GMPR 2766 broad.mit.edu 36 6 16403303 16403303 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006877 exon9 c.G945A p.T315T . . . ATXN1 6310 broad.mit.edu 36 6 16435487 16435487 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000332 exon8 c.G1034T p.G345V . . . CAP2 10486 broad.mit.edu 36 6 17651309 17651309 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006366 exon11 c.G1165A p.V389M . . . KIF13A 63971 broad.mit.edu 36 6 17889465 17889465 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022113 exon30 c.C3591A p.S1197S . . . DEK 7913 broad.mit.edu 36 6 18344712 18344712 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003472 exon9 c.C997T p.L333L . . . KIAA0319 9856 broad.mit.edu 36 6 24664914 24664914 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168377 exon18 c.C2757A p.G919G . . . LRRC16A 55604 broad.mit.edu 36 6 25603364 25603364 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017640 exon16 c.T1267G p.S423A . . . MAS1L 116511 broad.mit.edu 36 6 29562781 29562781 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052967 exon1 c.T878C p.V293A . . . TRIM26 7726 broad.mit.edu 36 6 30262054 30262054 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003449 exon10 c.G1198A p.E400K . . . VARS2 57176 broad.mit.edu 36 6 30997373 30997373 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167733 exon17 c.G1241A p.R414Q . . . LY6G5C 80741 broad.mit.edu 36 6 31752776 31752776 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025262 exon3 c.C390A p.F130L . . . TNXB 7148 broad.mit.edu 36 6 32128455 32128455 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon26 c.G9079A p.V3027M . . . TNXB 7148 broad.mit.edu 36 6 32144697 32144697 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon16 c.G5782T p.G1928X . . . TNXB 7148 broad.mit.edu 36 6 32171775 32171775 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019105 exon3 c.C1833T p.Y611Y . . . GPSM3 63940 broad.mit.edu 36 6 32267130 32267130 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022107 exon8 c.C474G p.H158Q . . . BTNL2 56244 broad.mit.edu 36 6 32480905 32480905 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019602 exon2 c.A216G p.T72T . . . FGD2 221472 broad.mit.edu 36 6 37091605 37091605 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173558 exon9 c.C1113T p.A371A . . . C6orf146 222826 broad.mit.edu 36 6 4015050 4015050 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173563 exon7 c.C406T p.Q136X . . . GUCA1B 2979 broad.mit.edu 36 6 42260553 42260553 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002098 exon4 c.G581T p.R194I . . . PRPH2 5961 broad.mit.edu 36 6 42798046 42798046 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000322 exon1 c.C5T p.A2V . . . RRP36 88745 broad.mit.edu 36 6 43103103 43103103 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033112 exon6 c.C553T p.R185X . . . PTK7 5754 broad.mit.edu 36 6 43205506 43205506 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152880 exon3 c.C431T p.T144I . . . CUL9 23113 broad.mit.edu 36 6 43296297 43296297 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon32 c.G6405A p.S2135S . . . ABCC10 89845 broad.mit.edu 36 6 43520579 43520579 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001198934 exon13 c.C2765T p.A922V . . . XPO5 57510 broad.mit.edu 36 6 43646629 43646629 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020750 exon4 c.G381A p.E127E . . . GPR110 266977 broad.mit.edu 36 6 47085606 47085606 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153840 exon11 c.G1524A p.T508T . . . CD2AP 23607 broad.mit.edu 36 6 47675045 47675045 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012120 exon13 c.G1324A p.V442I . . . GPR115 221393 broad.mit.edu 36 6 47790635 47790635 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153838 exon6 c.G1695A p.P565P . . . OPN5 221391 broad.mit.edu 36 6 47871025 47871025 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181744 exon4 c.G523A p.V175I . . . C6orf138 442213 broad.mit.edu 36 6 47954942 47954942 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013732 exon3 c.A1597T p.S533C . . . PKHD1 5314 broad.mit.edu 36 6 52035382 52035382 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170724 exon14 c.G1012A p.V338I . . . LGSN 51557 broad.mit.edu 36 6 64048312 64048312 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016571 exon4 c.G1103A p.R368H . . . PHF3 23469 broad.mit.edu 36 6 64480912 64480912 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015153 exon15 c.T5469C p.F1823F . . . BAI3 577 broad.mit.edu 36 6 69814920 69814920 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001704 exon14 c.A2230C p.S744R . . . RIMS1 22999 broad.mit.edu 36 6 73000264 73000264 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168410 exon2 c.G123A p.S41S . . . CD109 135228 broad.mit.edu 36 6 74496833 74496833 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133493 exon4 c.G322A p.G108R . . . COL12A1 1303 broad.mit.edu 36 6 75890503 75890503 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004370 exon42 c.G6752A p.R2251H . . . DOPEY1 23033 broad.mit.edu 36 6 83896809 83896809 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015018 exon17 c.A2590G p.I864V . . . SRSF12 135295 broad.mit.edu 36 6 89884268 89884268 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080743 exon1 c.G58A p.A20T . . . MDN1 23195 broad.mit.edu 36 6 90449686 90449686 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon73 c.A11988C p.E3996D . . . MDN1 23195 broad.mit.edu 36 6 90561058 90561058 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014611 exon3 c.G513A p.V171V . . . CASP8AP2 9994 broad.mit.edu 36 6 90635033 90635033 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137667 exon8 c.A5303C p.Q1768P . . . SFRS18 25957 broad.mit.edu 36 6 99960646 99960646 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015491 exon7 c.G984T p.E328D . . . USP45 85015 broad.mit.edu 36 6 100000429 100000429 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080481 exon14 c.1940delA p.N647fs . . . REV3L 5980 broad.mit.edu 36 6 111801378 111801378 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002912 exon13 c.4873delT p.S1625fs . . . TRDN 10345 broad.mit.edu 36 6 123636194 123636194 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006073 exon28 c.1611delA p.K537fs . . . PTPRK 5796 broad.mit.edu 36 6 128359782 128359782 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002844 exon17 c.2724delA p.K908fs . . . TUBB 203068 broad.mit.edu 36 6 30799239 30799239 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178014 exon4 c.421delG p.G141fs . . . DNAH8 1769 broad.mit.edu 36 6 38962753 38962753 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001371 exon55 c.7817delT p.I2606fs . . . ME1 4199 broad.mit.edu 36 6 84081778 84081778 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002395 exon6 c.674delT p.L225fs . . . CASP8AP2 9994 broad.mit.edu 36 6 90635151 90635151 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001137667 exon8 c.5421delA p.V1807fs . . . DAGLB 221955 broad.mit.edu 36 7 6416421 6416422 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139179 exon14 c.1685_1686insG p.E562fs . . . MOSPD3 64598 broad.mit.edu 36 7 100050513 100050513 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040098 exon5 c.C599T p.P200L . . . SLC12A9 56996 broad.mit.edu 36 7 100295536 100295536 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020246 exon8 c.G1071A p.A357A . . . SRRT 51593 broad.mit.edu 36 7 100320776 100320776 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128852 exon10 c.C1163T p.A388V . . . AP1S1 1174 broad.mit.edu 36 7 100586749 100586749 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001283 exon2 c.G158T p.R53M . . . CUX1 1523 broad.mit.edu 36 7 101628845 101628845 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181552 exon16 c.G1938A p.P646P . . . POLR2J3 548644 broad.mit.edu 36 7 101995574 101995574 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001097615 exon3 c.G304C p.E102Q . . . RELN 5649 broad.mit.edu 36 7 103063261 103063261 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon19 c.A2312G p.Q771R . . . MLL5 55904 broad.mit.edu 36 7 104536749 104536749 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182931 exon23 c.G3593A p.G1198D . . . PIK3CG 5294 broad.mit.edu 36 7 106295570 106295570 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002649 exon2 c.T328C p.Y110H . . . PRKAR2B 5577 broad.mit.edu 36 7 106584909 106584909 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002736 exon10 c.C1027T p.R343X . . . ZNF277 11179 broad.mit.edu 36 7 111765053 111765053 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021994 exon9 c.C902A p.S301Y . . . FOXP2 93986 broad.mit.edu 36 7 114079559 114079559 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148899 exon8 c.T1160C p.V387A . . . CTTNBP2 83992 broad.mit.edu 36 7 117219139 117219139 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033427 exon4 c.A1347G p.R449R . . . RBM28 55131 broad.mit.edu 36 7 127760583 127760583 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166135 exon5 c.T593C p.I198T . . . ZC3HC1 51530 broad.mit.edu 36 7 129451425 129451425 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016478 exon7 c.C934T p.P312S . . . PLXNA4 91584 broad.mit.edu 36 7 131533922 131533922 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020911 exon13 c.C2600T p.T867I . . . WDR91 29062 broad.mit.edu 36 7 134521490 134521490 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014149 exon15 c.A2197G p.M733V . . . WDR91 29062 broad.mit.edu 36 7 134533386 134533386 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014149 exon7 c.G949A p.G317R . . . NUP205 23165 broad.mit.edu 36 7 134973912 134973912 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015135 exon38 c.C5333G p.A1778G . . . KIAA1549 57670 broad.mit.edu 36 7 138252866 138252866 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164665 exon2 c.G2046A p.Q682Q . . . HIPK2 28996 broad.mit.edu 36 7 138966566 138966566 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022740 exon4 c.G1232A p.R411Q . . . RAB19 401409 broad.mit.edu 36 7 139758215 139758215 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008749 exon3 c.G274A p.A92T . . . MKRN1 23608 broad.mit.edu 36 7 139806042 139806042 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145125 exon3 c.G478T p.G160X . . . BRAF 673 broad.mit.edu 36 7 140099605 140099605 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . KEL 3792 broad.mit.edu 36 7 142361410 142361410 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000420 exon8 c.A907C p.T303P . . . OR2A5 393046 broad.mit.edu 36 7 143378702 143378702 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012365 exon1 c.T275A p.I92N . . . C7orf33 202865 broad.mit.edu 36 7 147942142 147942142 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145304 exon2 c.G280A p.A94T . . . SSPO 23145 broad.mit.edu 36 7 149114236 149114236 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198455 exon21 c.G3375T p.L1125L . . . GIMAP8 155038 broad.mit.edu 36 7 149805568 149805568 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175571 exon5 c.C1765T p.R589C . . . GIMAP4 55303 broad.mit.edu 36 7 149900653 149900653 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018326 exon3 c.G562A p.A188T . . . ABCB8 11194 broad.mit.edu 36 7 150368602 150368602 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007188 exon11 c.G1336A p.V446I . . . NUB1 51667 broad.mit.edu 36 7 150677244 150677244 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016118 exon3 c.A270G p.P90P . . . ITGB8 3696 broad.mit.edu 36 7 20385316 20385316 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002214 exon4 c.T506G p.V169G . . . FAM126A 84668 broad.mit.edu 36 7 22984456 22984456 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032581 exon4 c.G290A p.S97N . . . KLHL7 55975 broad.mit.edu 36 7 23129926 23129926 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031710 exon2 c.G126A p.T42T . . . MPP6 51678 broad.mit.edu 36 7 24647880 24647880 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016447 exon4 c.T138C p.D46D . . . NFE2L3 9603 broad.mit.edu 36 7 26184098 26184098 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004289 exon2 c.T581C p.V194A . . . HOXA1 3198 broad.mit.edu 36 7 27100854 27100854 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005522 exon2 c.G738A p.K246K . . . AMZ1 155185 broad.mit.edu 36 7 2714822 2714822 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133463 exon4 c.C547A p.L183M . . . NOD1 10392 broad.mit.edu 36 7 30458499 30458499 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006092 exon6 c.C1059A p.S353S . . . PDE1C 5137 broad.mit.edu 36 7 32176093 32176093 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001191058 exon3 c.G137A p.R46Q . . . AMPH 273 broad.mit.edu 36 7 38471627 38471627 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139316 exon9 c.C714T p.H238H . . . GLI3 2737 broad.mit.edu 36 7 41970588 41970588 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000168 exon15 c.C4608T p.S1536S . . . SDK1 221935 broad.mit.edu 36 7 4243918 4243918 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152744 exon42 c.A6106G p.K2036E . . . STK17A 9263 broad.mit.edu 36 7 43629857 43629857 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004760 exon6 c.C765T p.V255V . . . PGAM2 5224 broad.mit.edu 36 7 44071124 44071124 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000290 exon2 c.G427A p.A143T . . . CAMK2B 816 broad.mit.edu 36 7 44248723 44248723 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_172078 exon9 c.G657A p.Q219Q . . . NPC1L1 29881 broad.mit.edu 36 7 44545147 44545147 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013389 exon2 c.G1374A p.S458S . . . OGDH 4967 broad.mit.edu 36 7 44713457 44713457 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002541 exon21 c.G2741A p.R914Q . . . FOXK1 221937 broad.mit.edu 36 7 4765367 4765367 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037165 exon6 c.C1404T p.S468S . . . FOXK1 221937 broad.mit.edu 36 7 4767383 4767383 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037165 exon8 c.G1859A p.R620Q . . . VWC2 375567 broad.mit.edu 36 7 49785599 49785599 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198570 exon2 c.G22A p.A8T . . . IKZF1 10320 broad.mit.edu 36 7 50411854 50411854 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006060 exon4 c.G290T p.R97M . . . FBXL18 80028 broad.mit.edu 36 7 5507959 5507959 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024963 exon3 c.G467A p.G156D . . . CYTH3 9265 broad.mit.edu 36 7 6177100 6177100 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004227 exon8 c.G597A p.M199I . . . C7orf70 84792 broad.mit.edu 36 7 6337104 6337104 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037163 exon2 c.G207A p.P69P . . . ZNF680 340252 broad.mit.edu 36 7 63619004 63619004 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178558 exon4 c.A1563G p.E521E . . . KCTD7 154881 broad.mit.edu 36 7 65741620 65741620 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167961 exon4 c.G836A p.R279H . . . AUTS2 26053 broad.mit.edu 36 7 69866145 69866145 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015570 exon7 c.T1096C p.S366P . . . BAZ1B 9031 broad.mit.edu 36 7 72518605 72518605 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032408 exon10 c.G2929A p.V977I . . . BAZ1B 9031 broad.mit.edu 36 7 72530605 72530605 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032408 exon7 c.G1122A p.S374S . . . LAT2 7462 broad.mit.edu 36 7 73272256 73272256 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032463 exon6 c.C209T p.A70V . . . NCF1 653361 broad.mit.edu 36 7 73831670 73831670 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000265 exon4 c.C361T p.R121C . . . CCDC146 57639 broad.mit.edu 36 7 76754149 76754149 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020879 exon16 c.C2247T p.T749T . . . C7orf63 79846 broad.mit.edu 36 7 89712702 89712702 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001160138 exon1 c.G28A p.A10T . . . AKAP9 10142 broad.mit.edu 36 7 91468707 91468707 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147185 exon8 c.G1540A p.E514K . . . ARPC1A 10552 broad.mit.edu 36 7 98795107 98795107 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190996 exon8 c.C751A p.H251N . . . ZNF655 79027 broad.mit.edu 36 7 99008180 99008180 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001083956 exon4 c.C618A p.A206A . . . CYP2W1 54905 broad.mit.edu 36 7 992816 992816 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017781 exon5 c.C676A p.L226M . . . COPS6 10980 broad.mit.edu 36 7 99524591 99524591 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006833 exon1 c.C42T p.T14T . . . AGFG2 3268 broad.mit.edu 36 7 99998214 99998214 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006076 exon8 c.G1060A p.G354S . . . PCOLCE 5118 broad.mit.edu 36 7 100040658 100040658 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002593 exon4 c.472delT p.F158fs . . . SLC26A5 375611 broad.mit.edu 36 7 102848544 102848544 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_206884 exon4 c.169delA p.I57X . . . AASS 10157 broad.mit.edu 36 7 121513410 121513410 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005763 exon19 c.2076delT p.F692fs . . . NOBOX 135935 broad.mit.edu 36 7 143727123 143727123 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080413 exon6 c.971delC p.P324fs . . . CHPF2 54480 broad.mit.edu 36 7 150563085 150563086 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019015 exon2 c.282_283del p.94_95del . . . GALNTL5 168391 broad.mit.edu 36 7 151315256 151315257 + Frame_Shift_Del DEL GG - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 GG GG GG - GG GG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145292 exon5 c.615_616del p.205_206del . . . GPR141 353345 broad.mit.edu 36 7 37747205 37747205 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181791 exon1 c.685delT p.F229fs . . . PKD1L1 168507 broad.mit.edu 36 7 47911298 47911298 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138295 exon11 c.1672delA p.R558fs . . . MAGI2 9863 broad.mit.edu 36 7 77594589 77594589 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012301 exon19 c.3284delC p.P1095fs . . . AKAP9 10142 broad.mit.edu 36 7 91441021 91441021 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_147185 exon2 c.109delA p.K37fs . . . TMEM55A 55529 broad.mit.edu 36 8 92090147 92090148 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_018710 exon5 c.539_540insA p.I180fs . . . CPSF1 29894 broad.mit.edu 36 8 145592766 145592767 + Splice_Site INS - G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . GRHL2 79977 broad.mit.edu 36 8 102701089 102701089 + Silent SNP C G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024915 exon9 c.C1245G p.V415V . . . PINX1 54984 broad.mit.edu 36 8 10726604 10726604 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017884 exon4 c.C282T p.C94C . . . RSPO2 340419 broad.mit.edu 36 8 109163961 109163961 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178565 exon2 c.C82T p.R28C . . . MTMR9 66036 broad.mit.edu 36 8 11201233 11201233 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015458 exon5 c.T716C p.L239P . . . CSMD3 114788 broad.mit.edu 36 8 113771397 113771397 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198123 exon14 c.C2031T p.G677G . . . BLK 640 broad.mit.edu 36 8 11443973 11443973 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001715 exon5 c.G301A p.V101I . . . TRPS1 7227 broad.mit.edu 36 8 116495939 116495939 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014112 exon7 c.C3373T p.R1125W . . . CTSB 1508 broad.mit.edu 36 8 11745798 11745798 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147781 exon5 c.T313C p.C105R . . . TNFRSF11B 4982 broad.mit.edu 36 8 120006003 120006003 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002546 exon5 c.C997T p.R333X . . . COL14A1 7373 broad.mit.edu 36 8 121391458 121391458 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021110 exon37 c.C4431T p.G1477G . . . EFR3A 23167 broad.mit.edu 36 8 133035330 133035330 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015137 exon6 c.C572T p.P191L . . . KCNQ3 3786 broad.mit.edu 36 8 133211098 133211098 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004519 exon15 c.G2212A p.A738T . . . FAM135B 51059 broad.mit.edu 36 8 139233467 139233467 + Silent SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015912 exon13 c.T2433G p.S811S . . . COL22A1 169044 broad.mit.edu 36 8 139678341 139678341 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152888 exon62 c.A4420G p.K1474E . . . FLJ43860 389690 broad.mit.edu 36 8 142520961 142520961 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207414 exon22 c.A2920G p.T974A . . . ARC 23237 broad.mit.edu 36 8 143691647 143691647 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015193 exon1 c.C988T p.Q330X . . . FAM83H 286077 broad.mit.edu 36 8 144884706 144884706 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198488 exon2 c.A35G p.D12G . . . DGAT1 8694 broad.mit.edu 36 8 145512031 145512031 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012079 exon12 c.G965A p.R322H . . . MSR1 4481 broad.mit.edu 36 8 16070464 16070464 + Silent SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138716 exon4 c.A504T p.G168G . . . PCM1 5108 broad.mit.edu 36 8 17868954 17868954 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006197 exon21 c.C3407T p.A1136V . . . MYOM2 9172 broad.mit.edu 36 8 2014347 2014347 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003970 exon12 c.C1388T p.A463V . . . PIWIL2 55124 broad.mit.edu 36 8 22196518 22196518 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018068 exon5 c.C452T p.A151V . . . PPP3CC 5533 broad.mit.edu 36 8 22354874 22354874 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_005605 exon1 c.G7A p.G3R . . . SORBS3 10174 broad.mit.edu 36 8 22485853 22485853 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018003 exon9 c.G877C p.E293Q . . . TNFRSF10A 8797 broad.mit.edu 36 8 23114203 23114203 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003844 exon5 c.G645T p.M215I . . . ADAMDEC1 27299 broad.mit.edu 36 8 24312467 24312467 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145272 exon8 c.A661G p.K221E . . . ADRA1A 148 broad.mit.edu 36 8 26778361 26778361 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033302 exon1 c.A43G p.T15A . . . C8orf80 389643 broad.mit.edu 36 8 27971700 27971700 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001010906 exon9 c.A1110G p.A370A . . . C8orf80 389643 broad.mit.edu 36 8 27981126 27981126 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010906 exon6 c.C535A p.L179M . . . TMEM66 51669 broad.mit.edu 36 8 30051020 30051020 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016127 exon2 c.G197T p.C66F . . . KCNU1 157855 broad.mit.edu 36 8 36817248 36817248 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031836 exon15 c.C1628T p.A543V . . . KCNU1 157855 broad.mit.edu 36 8 36886095 36886095 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031836 exon21 c.A2215G p.R739G . . . DDHD2 23259 broad.mit.edu 36 8 38236779 38236779 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164232 exon17 c.G2119A p.D707N . . . FAM110B 90362 broad.mit.edu 36 8 59221855 59221855 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_147189 exon5 c.G512A p.R171H . . . PREX2 80243 broad.mit.edu 36 8 69027223 69027223 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025170 exon1 c.G40A p.A14T . . . PREX2 80243 broad.mit.edu 36 8 69165433 69165433 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025170 exon20 c.G2179A p.V727I . . . JPH1 56704 broad.mit.edu 36 8 75389967 75389967 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020647 exon2 c.G823A p.A275T . . . ZFHX4 79776 broad.mit.edu 36 8 77928251 77928251 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024721 exon10 c.C6539T p.T2180M . . . SGK223 157285 broad.mit.edu 36 8 8213336 8213336 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080826 exon5 c.T3959C p.V1320A . . . E2F5 1875 broad.mit.edu 36 8 86308866 86308866 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083588 exon6 c.C853T p.Q285X . . . CNGB3 54714 broad.mit.edu 36 8 87660092 87660092 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019098 exon17 c.G2044A p.G682S . . . OTUD6B 51633 broad.mit.edu 36 8 92160016 92160016 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016023 exon4 c.T662C p.V221A . . . INTS8 55656 broad.mit.edu 36 8 95954855 95954855 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017864 exon22 c.G2611A p.V871M . . . PTDSS1 9791 broad.mit.edu 36 8 97343458 97343458 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014754 exon1 c.T14C p.V5A . . . SOX7 83595 broad.mit.edu 36 8 10621056 10621056 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031439 exon2 c.769delC p.L257fs . . . PLEC 5339 broad.mit.edu 36 8 145072962 145072963 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 AG AG AG - AG AG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201383 exon30 c.4033_4034del p.1345_1345del . . . COMMD5 28991 broad.mit.edu 36 8 146047303 146047305 + In_Frame_Del DEL GGC - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 GGC GGC Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001081004 exon2 c.223_225del p.75_75del . . . ZNF395 55893 broad.mit.edu 36 8 28266728 28266728 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018660 exon5 c.700delC p.H234fs . . . ASPH 444 broad.mit.edu 36 8 62759297 62759298 + Frame_Shift_Del DEL TG - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 TG TG TG - TG TG Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001164753 exon2 c.20_21del p.7_7del . . . LRRCC1 85444 broad.mit.edu 36 8 86228741 86228741 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033402 exon10 c.1501delA p.K501fs . . . LRRC69 100130742 broad.mit.edu 36 8 92282121 92282121 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129890 exon7 c.858delA p.G286fs . . . HRSP12 10247 broad.mit.edu 36 8 99187720 99187720 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005836 exon3 c.182delA p.N61fs . . . INVS 27130 broad.mit.edu 36 9 102102755 102102756 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - A - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014425 exon17 c.3176_3177insA p.P1059fs . . . MCART1 92014 broad.mit.edu 36 9 37877696 37877697 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033412 exon3 c.852_853insG p.G284fs . . . GABBR2 9568 broad.mit.edu 36 9 100095995 100095995 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005458 exon18 c.G2553T p.K851N . . . GABBR2 9568 broad.mit.edu 36 9 100105438 100105438 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005458 exon16 c.C2318T p.T773M . . . COL15A1 1306 broad.mit.edu 36 9 100850103 100850103 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001855 exon28 c.G2793A p.Q931Q . . . TMEFF1 8577 broad.mit.edu 36 9 102244235 102244235 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080655 exon2 c.G194A p.R65Q . . . RNF20 56254 broad.mit.edu 36 9 103352772 103352772 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019592 exon10 c.T1156C p.S386P . . . OR13C9 286362 broad.mit.edu 36 9 106420012 106420012 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001956 exon1 c.G295A p.V99M . . . UGCG 7357 broad.mit.edu 36 9 113716833 113716833 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003358 exon2 c.T226A p.L76M . . . KIAA1958 158405 broad.mit.edu 36 9 114461412 114461412 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133465 exon4 c.G1393A p.V465I . . . SNX30 401548 broad.mit.edu 36 9 114619892 114619892 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012994 exon3 c.A435T p.E145D . . . RGS3 5998 broad.mit.edu 36 9 115338978 115338978 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144488 exon20 c.G1996A p.A666T . . . AMBP 259 broad.mit.edu 36 9 115871815 115871815 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001633 exon6 c.G588A p.E196E . . . TNC 3371 broad.mit.edu 36 9 116828634 116828634 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002160 exon26 c.G6331T p.G2111C . . . LHX6 26468 broad.mit.edu 36 9 124029076 124029076 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199160 exon3 c.G211A p.A71T . . . OR1B1 347169 broad.mit.edu 36 9 124431154 124431154 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004450 exon1 c.G482A p.R161H . . . STRBP 55342 broad.mit.edu 36 9 124927721 124927721 + Silent SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171137 exon19 c.T1953G p.P651P . . . DENND1A 57706 broad.mit.edu 36 9 125254415 125254415 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024820 exon17 c.G1260T p.K420N . . . OLFML2A 169611 broad.mit.edu 36 9 126589245 126589245 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182487 exon2 c.C261T p.R87R . . . OLFML2A 169611 broad.mit.edu 36 9 126589326 126589326 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182487 exon2 c.C342T p.P114P . . . MAPKAP1 79109 broad.mit.edu 36 9 127474565 127474565 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001006617 exon2 c.A110G p.D37G . . . GARNL3 84253 broad.mit.edu 36 9 129195313 129195313 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032293 exon28 c.C3001A p.L1001I . . . FAM102A 399665 broad.mit.edu 36 9 129750303 129750303 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001035254 exon6 c.A484G p.I162V . . . DNM1 1759 broad.mit.edu 36 9 130052291 130052291 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005336 exon19 c.C2152A p.R718R . . . GLE1 2733 broad.mit.edu 36 9 130325935 130325935 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003722 exon6 c.G886T p.A296S . . . ABL1 25 broad.mit.edu 36 9 132745283 132745283 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005157 exon9 c.G1431A p.Q477Q . . . SARDH 1757 broad.mit.edu 36 9 135521787 135521787 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007101 exon20 c.C2522A p.A841D . . . COL5A1 1289 broad.mit.edu 36 9 136826933 136826933 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000093 exon34 c.C2750T p.P917L . . . KIAA0649 9858 broad.mit.edu 36 9 137518202 137518202 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014811 exon4 c.C2025T p.D675D . . . SEC16A 9919 broad.mit.edu 36 9 138471767 138471767 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014866 exon18 c.C5500A p.L1834M . . . FREM1 158326 broad.mit.edu 36 9 14841520 14841520 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144966 exon7 c.T914G p.L305R . . . ADAMTSL1 92949 broad.mit.edu 36 9 18665874 18665874 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052866 exon10 c.A1105G p.M369V . . . SLC24A2 25769 broad.mit.edu 36 9 19776464 19776464 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020344 exon2 c.C401T p.A134V . . . VLDLR 7436 broad.mit.edu 36 9 2629950 2629950 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001018056 exon3 c.A294G p.E98E . . . C9orf82 79886 broad.mit.edu 36 9 26877366 26877366 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024828 exon2 c.G449A p.C150Y . . . TEK 7010 broad.mit.edu 36 9 27202815 27202815 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000459 exon17 c.G2797A p.A933T . . . TAF1L 138474 broad.mit.edu 36 9 32625317 32625317 + Silent SNP A G G rs16918395 byHapMap TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153809 exon1 c.T261C p.T87T . . . C9orf23 138716 broad.mit.edu 36 9 34601094 34601094 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_148178 exon2 c.C200T p.A67V . . . TLN1 7094 broad.mit.edu 36 9 35707759 35707759 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006289 exon18 c.G2020T p.A674S . . . NPR2 4882 broad.mit.edu 36 9 35795897 35795897 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003995 exon14 c.C2118T p.D706D . . . FBXO10 26267 broad.mit.edu 36 9 37506059 37506059 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012166 exon10 c.G2538A p.S846S . . . RG9MTD3 158234 broad.mit.edu 36 9 37753636 37753636 + Silent SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144964 exon4 c.C306A p.P102P . . . PRKACG 5568 broad.mit.edu 36 9 70818229 70818229 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002732 exon1 c.C600T p.C200C . . . PCSK5 5125 broad.mit.edu 36 9 77938888 77938888 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001190482 exon10 c.A1252G p.T418A . . . PRUNE2 158471 broad.mit.edu 36 9 78508133 78508133 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015225 exon9 c.C8216T p.T2739M . . . PTPRD 5789 broad.mit.edu 36 9 8379326 8379326 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040712 exon21 c.C3062A p.S1021Y . . . PTPRD 5789 broad.mit.edu 36 9 8491056 8491056 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002839 exon24 c.C1826T p.P609L . . . PTPRD 5789 broad.mit.edu 36 9 8494274 8494274 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001040712 exon11 c.A1800C p.R600S . . . DAPK1 1612 broad.mit.edu 36 9 89511295 89511295 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004938 exon26 c.C3489T p.G1163G . . . DAPK1 1612 broad.mit.edu 36 9 89511484 89511484 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004938 exon26 c.G3678A p.T1226T . . . FAM120A 23196 broad.mit.edu 36 9 95364312 95364312 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014612 exon17 c.C2950A p.R984S . . . ZNF782 158431 broad.mit.edu 36 9 98620936 98620936 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001662 exon6 c.C1190A p.P397H . . . ENG 2022 broad.mit.edu 36 9 129627034 129627034 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001114753 exon7 c.857delA p.N286fs . . . FCN2 2220 broad.mit.edu 36 9 136917515 136917515 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004108 exon6 c.510delG p.L170fs . . . WNK2 65268 broad.mit.edu 36 9 95091652 95091652 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006648 exon19 c.4795delG p.G1599fs . . . CTSL3 392360 broad.mit.edu 36 9 89577691 89577691 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . MID1 4281 broad.mit.edu 36 X 10397562 10397563 + Frame_Shift_Ins INS - T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001193279 exon6 c.1460_1461insA p.T487fs . . . PNPLA4 8228 broad.mit.edu 36 X 7849833 7849834 + In_Frame_Ins INS - GTC GTC novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - - GTC - - Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172672 exon3 c.71_72insGAC p.L24delinsRL . . . PORCN 64840 broad.mit.edu 36 X 48253062 48253063 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . XKRX 402415 broad.mit.edu 36 X 100056624 100056624 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_212559 exon3 c.C709T p.P237S . . . ARMCX3 51566 broad.mit.edu 36 X 100766634 100766634 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_177948 exon5 c.C9T p.Y3Y . . . CLCN4 1183 broad.mit.edu 36 X 10136182 10136182 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001830 exon9 c.G941T p.S314I . . . ESX1 80712 broad.mit.edu 36 X 103386173 103386173 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153448 exon1 c.G14A p.R5H . . . IL1RAPL2 26280 broad.mit.edu 36 X 104897838 104897838 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017416 exon11 c.T1589G p.L530R . . . MUM1L1 139221 broad.mit.edu 36 X 105337695 105337695 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152423 exon5 c.A1614C p.Q538H . . . MORC4 79710 broad.mit.edu 36 X 106088255 106088255 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001085354 exon11 c.G1352T p.W451L . . . TEX13B 56156 broad.mit.edu 36 X 107111972 107111972 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031273 exon2 c.C42T p.H14H . . . COL4A5 1287 broad.mit.edu 36 X 107712783 107712783 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000495 exon17 c.A950G p.D317G . . . COL4A5 1287 broad.mit.edu 36 X 107751752 107751752 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000495 exon32 c.G2741A p.G914D . . . IRS4 8471 broad.mit.edu 36 X 107864863 107864863 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003604 exon1 c.G1368A p.L456L . . . LONRF3 79836 broad.mit.edu 36 X 117993326 117993326 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024778 exon1 c.G555A p.G185G . . . ZBTB33 10009 broad.mit.edu 36 X 119273277 119273277 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006777 exon2 c.G1979A p.G660D . . . ODZ1 10178 broad.mit.edu 36 X 123346085 123346085 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014253 exon29 c.T6356A p.I2119N . . . ODZ1 10178 broad.mit.edu 36 X 123366735 123366735 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014253 exon26 c.G5197A p.G1733R . . . ODZ1 10178 broad.mit.edu 36 X 123855845 123855845 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014253 exon3 c.T516C p.A172A . . . BCORL1 63035 broad.mit.edu 36 X 128974271 128974271 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021946 exon2 c.C123T p.G41G . . . ENOX2 10495 broad.mit.edu 36 X 129627333 129627333 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182314 exon10 c.C1066T p.R356W . . . FRMD7 90167 broad.mit.edu 36 X 131040322 131040322 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194277 exon12 c.T1404C p.R468R . . . ATXN3L 92552 broad.mit.edu 36 X 13247206 13247206 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135995 exon1 c.G769T p.G257C . . . HPRT1 3251 broad.mit.edu 36 X 133460354 133460354 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000194 exon8 c.T583A p.Y195N . . . FAM127B 26071 broad.mit.edu 36 X 134013533 134013533 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001078172 exon1 c.T272C p.L91P . . . CT45A5 441521 broad.mit.edu 36 X 134775632 134775632 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172288 exon3 c.A359G p.Q120R . . . EGFL6 25975 broad.mit.edu 36 X 13522910 13522910 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167890 exon3 c.C222T p.C74C . . . ARHGEF6 9459 broad.mit.edu 36 X 135591728 135591728 + Silent SNP T A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004840 exon14 c.A1545T p.T515T . . . GPR101 83550 broad.mit.edu 36 X 135941016 135941016 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_054021 exon1 c.C484T p.Q162X . . . ATP11C 286410 broad.mit.edu 36 X 138706211 138706211 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010986 exon12 c.A1102G p.M368V . . . MAGEC3 139081 broad.mit.edu 36 X 140794842 140794842 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138702 exon3 c.C474T p.A158A . . . MAGEC3 139081 broad.mit.edu 36 X 140813265 140813265 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138702 exon8 c.C1913T p.T638I . . . UBE2NL 389898 broad.mit.edu 36 X 142794908 142794908 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012989 exon1 c.C40A p.R14S . . . SLITRK2 84631 broad.mit.edu 36 X 144714055 144714055 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001144006 exon3 c.C2420T p.P807L . . . FMR1NB 158521 broad.mit.edu 36 X 146897863 146897863 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152578 exon4 c.G572A p.G191D . . . MAGEA11 4110 broad.mit.edu 36 X 148576191 148576191 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011544 exon5 c.G981T p.K327N . . . MAGEA11 4110 broad.mit.edu 36 X 148576921 148576921 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001011544 exon5 c.T251C p.L84P . . . ASB9 140462 broad.mit.edu 36 X 15182865 15182865 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168531 exon4 c.C197T p.T66M . . . ZNF185 7739 broad.mit.edu 36 X 151838245 151838245 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007150 exon7 c.A494T p.E165V . . . ZNF275 10838 broad.mit.edu 36 X 152265631 152265631 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080485 exon4 c.A294C p.E98D . . . TREX2 11219 broad.mit.edu 36 X 152363829 152363829 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080701 exon2 c.T254C p.L85P . . . PLXNB3 5365 broad.mit.edu 36 X 152687609 152687609 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163257 exon6 c.G1348T p.G450C . . . ATP6AP1 537 broad.mit.edu 36 X 153315893 153315893 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001183 exon7 c.C830T p.A277V . . . GDI1 2664 broad.mit.edu 36 X 153324077 153324077 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001493 exon11 c.C1208T p.S403F . . . PLXNA3 55558 broad.mit.edu 36 X 153348980 153348980 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017514 exon19 c.T3413C p.V1138A . . . SLC10A3 8273 broad.mit.edu 36 X 153369946 153369946 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_019848 exon2 c.G528A p.T176T . . . F8 2157 broad.mit.edu 36 X 153874446 153874446 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000132 exon4 c.T560C p.L187S . . . ACE2 59272 broad.mit.edu 36 X 15506339 15506339 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021804 exon10 c.T1091C p.V364A . . . BEND2 139105 broad.mit.edu 36 X 18131931 18131931 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153346 exon5 c.C518T p.A173V . . . PHKA2 5256 broad.mit.edu 36 X 18846763 18846763 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000292 exon19 c.C2094T p.D698D . . . CNKSR2 22866 broad.mit.edu 36 X 21491421 21491421 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168649 exon12 c.C1391A p.P464H . . . PCYT1B 9468 broad.mit.edu 36 X 24518061 24518061 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001163264 exon4 c.G432T p.K144N . . . POLA1 5422 broad.mit.edu 36 X 24642675 24642675 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016937 exon5 c.T412C p.F138L . . . POLA1 5422 broad.mit.edu 36 X 24771642 24771642 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016937 exon34 c.C3956A p.P1319H . . . GYG2 8908 broad.mit.edu 36 X 2782118 2782118 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184703 exon5 c.G340A p.G114R . . . ARSD 414 broad.mit.edu 36 X 2853762 2853762 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_009589 exon2 c.C89T p.T30M . . . DMD 1756 broad.mit.edu 36 X 31132042 31132042 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004015 exon6 c.G560A p.G187E . . . MXRA5 25878 broad.mit.edu 36 X 3248722 3248722 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon5 c.A5004G p.S1668S . . . FAM47B 170062 broad.mit.edu 36 X 34871025 34871025 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152631 exon1 c.G156T p.T52T . . . MAGEB16 139604 broad.mit.edu 36 X 35730303 35730303 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099921 exon2 c.G69A p.Q23Q . . . PRKX 5613 broad.mit.edu 36 X 3602724 3602724 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005044 exon2 c.G250A p.D84N . . . MED14 9282 broad.mit.edu 36 X 40408583 40408583 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004229 exon25 c.G3368A p.R1123H . . . GPR34 2857 broad.mit.edu 36 X 41440840 41440840 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005300 exon3 c.T1010C p.I337T . . . SLC9A7 84679 broad.mit.edu 36 X 46406438 46406438 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032591 exon7 c.G998A p.G333D . . . ZNF81 347344 broad.mit.edu 36 X 47659304 47659304 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007137 exon5 c.T315G p.I105M . . . SSX3 10214 broad.mit.edu 36 X 48096515 48096515 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021014 exon5 c.G294T p.Q98H . . . SLC38A5 92745 broad.mit.edu 36 X 48210346 48210346 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033518 exon5 c.C192T p.S64S . . . GATA1 2623 broad.mit.edu 36 X 48537303 48537303 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002049 exon6 c.G1030A p.G344R . . . GRIPAP1 56850 broad.mit.edu 36 X 48724784 48724784 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020137 exon16 c.C1285T p.R429W . . . TFE3 7030 broad.mit.edu 36 X 48775962 48775962 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006521 exon9 c.T1178C p.V393A . . . CACNA1F 778 broad.mit.edu 36 X 48953144 48953144 + Silent SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon41 c.C4743A p.G1581G . . . CACNA1F 778 broad.mit.edu 36 X 48963901 48963901 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon19 c.G2394T p.E798D . . . CACNA1F 778 broad.mit.edu 36 X 48971521 48971521 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005183 exon8 c.C1039T p.L347L . . . CCDC22 28952 broad.mit.edu 36 X 48986358 48986358 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014008 exon4 c.T424C p.W142R . . . CCDC22 28952 broad.mit.edu 36 X 48986736 48986736 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014008 exon6 c.C578A p.P193H . . . SHROOM4 57477 broad.mit.edu 36 X 50395404 50395404 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020717 exon4 c.G409A p.V137M . . . MAGED1 9500 broad.mit.edu 36 X 51654568 51654568 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005333 exon3 c.C151A p.L51I . . . XAGE5 170627 broad.mit.edu 36 X 52858921 52858921 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_130775 exon3 c.A105G p.E35E . . . KDM5C 8242 broad.mit.edu 36 X 53247477 53247477 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004187 exon14 c.C2041T p.R681X . . . IQSEC2 23096 broad.mit.edu 36 X 53287803 53287803 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001111125 exon10 c.C2903A p.P968H . . . HUWE1 10075 broad.mit.edu 36 X 53590149 53590149 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031407 exon70 c.C10888T p.L3630L . . . HUWE1 10075 broad.mit.edu 36 X 53598398 53598398 + Silent SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031407 exon61 c.G8415A p.E2805E . . . HUWE1 10075 broad.mit.edu 36 X 53661042 53661042 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031407 exon20 c.C1763T p.A588V . . . FGD1 2245 broad.mit.edu 36 X 54508627 54508627 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004463 exon8 c.G1618A p.D540N . . . FGD1 2245 broad.mit.edu 36 X 54513524 54513524 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004463 exon4 c.C751T p.P251S . . . MTMR8 55613 broad.mit.edu 36 X 63486633 63486633 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017677 exon5 c.G511A p.V171I . . . OTUD6A 139562 broad.mit.edu 36 X 69199740 69199740 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207320 exon1 c.C641T p.T214M . . . AWAT1 158833 broad.mit.edu 36 X 69373680 69373680 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001013579 exon4 c.G317A p.G106D . . . P2RY4 5030 broad.mit.edu 36 X 69395756 69395756 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002565 exon1 c.C444T p.R148R . . . ACRC 93953 broad.mit.edu 36 X 70740945 70740945 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052957 exon8 c.G1093A p.D365N . . . RGAG4 340526 broad.mit.edu 36 X 71267163 71267163 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001024455 exon1 c.C953A p.P318Q . . . RLIM 51132 broad.mit.edu 36 X 73728875 73728875 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183353 exon5 c.C1000T p.R334W . . . ATRX 546 broad.mit.edu 36 X 76824443 76824443 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000489 exon9 c.G2961T p.K987N . . . ATP7A 538 broad.mit.edu 36 X 77188543 77188543 + Silent SNP T C C novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000052 exon23 c.T4323C p.D1441D . . . POU3F4 5456 broad.mit.edu 36 X 82650628 82650628 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000307 exon1 c.G640A p.D214N . . . KLHL4 56062 broad.mit.edu 36 X 86659595 86659595 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057162 exon1 c.C43A p.L15I . . . PCDH11X 27328 broad.mit.edu 36 X 91760436 91760436 + Silent SNP A G G novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032968 exon7 c.A3885G p.G1295G . . . NOX1 27035 broad.mit.edu 36 X 99991863 99991863 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007052 exon9 c.C1066T p.R356X . . . USP26 83844 broad.mit.edu 36 X 131988871 131988871 + Frame_Shift_Del DEL A - - rs61758857 unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031907 exon1 c.1044delT p.F348fs . . . SLC9A7 84679 broad.mit.edu 36 X 46414014 46414014 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032591 exon5 c.765delT p.F255fs . . . OGT 8473 broad.mit.edu 36 X 70699550 70699550 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 T T T - T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181673 exon16 c.2076delT p.T692fs . . . PCDH19 57526 broad.mit.edu 36 X 99549161 99549161 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G - G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001105243 exon1 c.1091delC p.P364fs . . . SSX6 280657 broad.mit.edu 36 X 47861430 47861430 + Silent SNP G A A novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . NYX 60506 broad.mit.edu 36 X 41192002 41192002 + De_novo_Start_InFrame DEL G - - novel unknown TCGA-AA-3947-01A-01W-0995-10 TCGA-AA-3947-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . .