Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
NDST2	8509	broad.mit.edu	36	10	75236520	75236521	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003635	exon5	c.1149_1150insT	p.F383fs	.	.	.
SLC18A2	6571	broad.mit.edu	36	10	118993563	118993563	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003054	exon3	c.C213G	p.I71M	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50624900	50624900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001143996	exon9	c.G1027A	p.A343T	.	.	.
MYPN	84665	broad.mit.edu	36	10	69640073	69640073	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032578	exon20	c.C3818T	p.P1273L	.	.	.
C10orf11	83938	broad.mit.edu	36	10	77754226	77754226	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032024	exon5	c.C494G	p.S165C	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105263456	105263456	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001077244	exon6	c.T674C	p.I225T	.	.	.
CTSD	1509	broad.mit.edu	36	11	1735301	1735301	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001909	exon5	c.T533G	p.V178G	.	.	.
MPPED2	744	broad.mit.edu	36	11	30473519	30473519	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001584	exon3	c.C436A	p.P146T	.	.	.
OR4C15	81309	broad.mit.edu	36	11	55078376	55078376	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001920	exon1	c.A18G	p.T6T	.	.	.
OR5AS1	219447	broad.mit.edu	36	11	55555203	55555203	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001921	exon1	c.C733G	p.L245V	.	.	.
MTL5	9633	broad.mit.edu	36	11	68271341	68271341	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039656	exon3	c.C541T	p.L181F	.	.	.
GPR133	283383	broad.mit.edu	36	12	130135106	130135106	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_198827	exon15	c.G1616A	p.C539Y	.	.	.
KRAS	3845	broad.mit.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004985	exon2	c.G35A	p.G12D	 KRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
CHD4	1108	broad.mit.edu	36	12	6570920	6570920	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001273	exon22	c.C3313T	p.R1105W	.	.	.
C12orf12	196477	broad.mit.edu	36	12	89872374	89872374	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152638	exon1	c.C277T	p.R93C	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24376172	24376172	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018451	exon8	c.2717delT	p.L906X	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46459050	46459050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182830	exon10	c.G1259A	p.R420H	.	.	.
FERMT2	10979	broad.mit.edu	36	14	52401279	52401279	+	De_novo_Start_OutOfFrame	SNP	A	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134999	exon11	c.T1316G	p.F439C	.	.	.
RTN1	6252	broad.mit.edu	36	14	59263980	59263980	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021136	exon3	c.C1175T	p.P392L	.	.	.
NRXN3	9369	broad.mit.edu	36	14	78339845	78339845	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004796	exon6	c.C1055T	p.T352M	.	.	.
GOLGA5	9950	broad.mit.edu	36	14	92333878	92333878	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005113	exon2	c.A343C	p.K115Q	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23498191	23498191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024490	exon13	c.G2725A	p.D909N	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41601326	41601326	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002373	exon4	c.C363T	p.S121S	.	.	.
STRC	161497	broad.mit.edu	36	15	41687385	41687385	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153700	exon18	c.C3762T	p.N1254N	.	.	.
HCN4	10021	broad.mit.edu	36	15	71422848	71422848	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005477	exon2	c.G1140A	p.T380T	.	.	.
PALB2	79728	broad.mit.edu	36	16	23522476	23522476	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024675	exon13	c.C3366T	p.D1122D	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75884476	75884476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199355	exon20	c.G3187A	p.E1063K	.	.	.
TP53	7157	broad.mit.edu	36	17	7519131	7519131	+	Missense_Mutation	SNP	C	T	T	rs28934578	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126114	exon5	c.G524A	p.R175H	 TP53,lung,NS,Substitution - Missense,0 	.	.
EFNB3	1949	broad.mit.edu	36	17	7552558	7552558	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001406	exon3	c.C496T	p.R166X	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22732395	22732395	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080409	exon5	c.C1883A	p.T628N	.	.	.
ZNF526	116115	broad.mit.edu	36	19	47420896	47420896	+	Silent	SNP	G	A	A	rs57984044	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133444	exon3	c.G501A	p.T167T	.	.	.
KLK15	55554	broad.mit.edu	36	19	56021960	56021960	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017509	exon3	c.G467T	p.S156I	.	.	.
ZNF761	388561	broad.mit.edu	36	19	58651406	58651406	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008401	exon6	c.T1834A	p.W612R	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61230918	61230918	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153447	exon7	c.G1507A	p.A503T	.	.	.
ZNF154	7710	broad.mit.edu	36	19	62905012	62905012	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001085384	exon3	c.C1117T	p.R373X	.	.	.
KHSRP	8570	broad.mit.edu	36	19	6367853	6367853	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003685	exon13	c.C1223T	p.P408L	.	.	.
FBN3	84467	broad.mit.edu	36	19	8058977	8058977	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032447	exon51	c.G6463A	p.G2155S	.	.	.
PSG8	440533	broad.mit.edu	36	19	47950421	47950421	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130168	exon4	c.781delC	p.Q261fs	.	.	.
PROK1	84432	broad.mit.edu	36	1	110798221	110798221	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032414	exon2	c.G188C	p.G63A	.	.	.
PRAMEF1	65121	broad.mit.edu	36	1	12776121	12776121	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_023013	exon2	c.C158T	p.T53M	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179968284	179968284	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000721	exon20	c.G2439A	p.P813P	.	.	.
TMEM63A	9725	broad.mit.edu	36	1	224111320	224111320	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014698	exon16	c.C1398G	p.F466L	.	.	.
OR14C36	127066	broad.mit.edu	36	1	246579501	246579501	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001001918	exon1	c.C802A	p.Q268K	.	.	.
C20orf71	128861	broad.mit.edu	36	20	31275307	31275307	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_178466	exon2	c.G157A	p.A53T	.	.	.
TPTE	7179	broad.mit.edu	36	21	9993196	9993196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_199259	exon5	c.C32T	p.A11V	.	.	.
SSTR3	6753	broad.mit.edu	36	22	35933570	35933570	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001051	exon2	c.G219A	p.T73T	.	.	.
WDR33	55339	broad.mit.edu	36	2	128183779	128183779	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018383	exon19	c.C3430T	p.R1144X	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191937139	191937139	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012223	exon11	c.A924G	p.E308E	.	.	.
CCDC150	284992	broad.mit.edu	36	2	197291534	197291534	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080539	exon18	c.G1929A	p.A643A	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215556669	215556669	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_173076	exon29	c.T4329C	p.G1443G	.	.	.
ADI1	55256	broad.mit.edu	36	2	3481856	3481856	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018269	exon4	c.A425G	p.Y142C	.	.	.
DNAJB8	165721	broad.mit.edu	36	3	129664115	129664115	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153330	exon3	c.G664A	p.G222S	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131909835	131909835	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014602	exon10	c.T2523G	p.D841E	.	.	.
ACAD11	84129	broad.mit.edu	36	3	133804812	133804812	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032169	exon13	c.A1572G	p.Q524Q	.	.	.
PLS1	5357	broad.mit.edu	36	3	143887884	143887884	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002670	exon9	c.T957C	p.I319I	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151904133	151904133	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152394	exon1	c.C243G	p.V81V	.	.	.
SETD2	29072	broad.mit.edu	36	3	47054236	47054236	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014159	exon18	c.C7274T	p.P2425L	.	.	.
FAT4	79633	broad.mit.edu	36	4	126556242	126556242	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024582	exon5	c.A6674C	p.Y2225S	.	.	.
FAT4	79633	broad.mit.edu	36	4	126592109	126592109	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024582	exon9	c.A10488G	p.L3496L	.	.	.
PRMT10	90826	broad.mit.edu	36	4	148798532	148798532	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_138364	exon8	c.T1191A	p.I397I	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156857837	156857837	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001130682	exon8	c.C1649T	p.A550V	.	.	.
WDR17	116966	broad.mit.edu	36	4	177269832	177269832	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_181265	exon2	c.C107A	p.A36D	.	.	.
PPP2R2C	5522	broad.mit.edu	36	4	6381943	6381943	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020416	exon8	c.C999T	p.Y333Y	.	.	.
NHEDC1	150159	broad.mit.edu	36	4	104089914	104089914	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139173	exon4	c.331delA	p.I111fs	.	.	.
APC	324	broad.mit.edu	36	5	112203297	112203297	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127511	exon14	c.C4053A	p.P1351P	 APC,large_intestine,NS,Complex - frameshift,+2 	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
PCDHGA5	56110	broad.mit.edu	36	5	140725642	140725642	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032054	exon1	c.G1561A	p.D521N	.	.	.
FAM105A	54491	broad.mit.edu	36	5	14663395	14663395	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019018	exon8	c.A1043C	p.D348A	.	.	.
STC2	8614	broad.mit.edu	36	5	172677463	172677463	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003714	exon4	c.G902A	p.R301Q	.	.	.
ENC1	8507	broad.mit.edu	36	5	73966619	73966619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003633	exon2	c.G1448A	p.R483H	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79068643	79068643	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153610	exon2	c.T8299C	p.S2767P	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838336	127838336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001012279	exon6	c.C2528T	p.A843V	.	.	.
PARK2	5071	broad.mit.edu	36	6	162395170	162395170	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004562	exon5	c.A561C	p.L187F	.	.	.
NAMPT	10135	broad.mit.edu	36	7	105702679	105702679	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005746	exon3	c.A267G	p.E89E	.	.	.
IFRD1	3475	broad.mit.edu	36	7	111883066	111883066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001550	exon2	c.G107A	p.R36Q	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131483868	131483868	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020911	exon26	c.C4738T	p.R1580X	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	146436318	146436318	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014141	exon5	c.G697A	p.G233R	.	.	.
EN2	2020	broad.mit.edu	36	7	154947887	154947887	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001427	exon2	c.C746T	p.T249M	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21868025	21868025	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003777	exon69	c.C11254T	p.R3752X	.	.	.
SEPT7	989	broad.mit.edu	36	7	35838958	35838958	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001011553	exon2	c.T89G	p.V30G	.	.	.
GCK	2645	broad.mit.edu	36	7	44156100	44156100	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000162	exon5	c.G572A	p.R191Q	.	.	.
TNRC18	84629	broad.mit.edu	36	7	5358232	5358232	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080495	exon17	c.C5214T	p.D1738D	.	.	.
RNF216	54476	broad.mit.edu	36	7	5629257	5629257	+	Silent	SNP	G	A	A	rs35337338	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207116	exon17	c.C2361T	p.P787P	.	.	.
PMS2	5395	broad.mit.edu	36	7	6005289	6005289	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000535	exon6	c.C681T	p.I227I	.	.	.
PEX1	5189	broad.mit.edu	36	7	91960215	91960215	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000466	exon20	c.G3195T	p.S1065S	.	.	.
PINX1	54984	broad.mit.edu	36	8	10660757	10660757	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017884	exon7	c.A551C	p.K184T	.	.	.
LONRF1	91694	broad.mit.edu	36	8	12631070	12631070	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152271	exon9	c.A1831G	p.S611G	.	.	.
EBF2	64641	broad.mit.edu	36	8	25953479	25953479	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_022659	exon5	c.C464T	p.T155M	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3232554	3232554	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033225	exon18	c.G2652A	p.S884S	.	.	.
ANK1	286	broad.mit.edu	36	8	41694356	41694356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_020475	exon12	c.G1228A	p.V410M	.	.	.
XKR4	114786	broad.mit.edu	36	8	56599084	56599084	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_052898	exon3	c.G1697A	p.R566Q	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930315	77930315	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024721	exon10	c.T8603C	p.L2868P	.	.	.
PTGR1	22949	broad.mit.edu	36	9	113380981	113380981	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146109	exon7	c.C567T	p.V189V	.	.	.
WDR31	114987	broad.mit.edu	36	9	115122596	115122596	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012361	exon9	c.A642C	p.L214F	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130423314	130423314	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195532	exon43	c.C5715T	p.R1905R	.	.	.
LCN1	3933	broad.mit.edu	36	9	137555581	137555581	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002297	exon4	c.G327A	p.S109S	.	.	.
ANKRD20A3	441425	broad.mit.edu	36	9	67558105	67558105	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012419	exon15	c.C1844G	p.A615G	.	.	.
APBA1	320	broad.mit.edu	36	9	71321881	71321881	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001163	exon2	c.C66T	p.N22N	.	.	.
AFF2	2334	broad.mit.edu	36	X	147845570	147845570	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002025	exon11	c.C2295A	p.S765R	.	.	.
NLGN3	54413	broad.mit.edu	36	X	70306515	70306515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3851-01A-01W-0995-10	TCGA-AA-3851-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166660	exon6	c.G2270A	p.R757Q	.	.	.