Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target MXI1 4601 broad.mit.edu 36 10 112034653 112034653 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_130439 exon6 c.T806A p.I269N . . . GFRA1 2674 broad.mit.edu 36 10 117846217 117846217 + Silent SNP A T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001145453 exon6 c.T804A p.S268S . . . KIAA1217 56243 broad.mit.edu 36 10 24873241 24873241 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_019590 exon19 c.C5036T p.T1679I . . . SFMBT2 57713 broad.mit.edu 36 10 7279533 7279533 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001029880 exon15 c.G1681A p.V561M . . . SFTPD 6441 broad.mit.edu 36 10 81687803 81687803 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003019 exon8 c.G913A p.V305I . . . RAB3IL1 5866 broad.mit.edu 36 11 61426549 61426549 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_013401 exon8 c.C940T p.R314X . . . INCENP 3619 broad.mit.edu 36 11 61662980 61662980 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001040694 exon7 c.G1218A p.T406T . . . MBD6 114785 broad.mit.edu 36 12 56207268 56207269 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 - - - C - - Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_052897 exon7 c.2073_2074insC p.T691fs . . . ERP29 10961 broad.mit.edu 36 12 110941963 110941963 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006817 exon2 c.C165T p.F55F . . . TMEM132D 121256 broad.mit.edu 36 12 128124754 128124754 + Silent SNP C A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_133448 exon9 c.G2919T p.L973L . . . ST8SIA1 6489 broad.mit.edu 36 12 22378374 22378374 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003034 exon1 c.G60A p.A20A . . . KRAS 3845 broad.mit.edu 36 12 25289548 25289548 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004985 exon2 c.G38A p.G13D KRAS,lung,NS,Substitution - Missense,-1 . . VWF 7450 broad.mit.edu 36 12 5997875 5997875 + Missense_Mutation SNP A G G rs61750593 unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000552 exon28 c.T4970C p.L1657P . . . RXFP2 122042 broad.mit.edu 36 13 31254873 31254873 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 T T T A T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_130806 exon11 c.T918A p.N306K . . . PCDH9 5101 broad.mit.edu 36 13 66697912 66697912 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020403 exon2 c.G2662A p.E888K . . . DMXL2 23312 broad.mit.edu 36 15 49565607 49565607 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015263 exon23 c.G5437A p.D1813N . . . HOMER2 9455 broad.mit.edu 36 15 81320497 81320497 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004839 exon6 c.A604G p.R202G . . . PHKB 5257 broad.mit.edu 36 16 46091271 46091271 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001031835 exon4 c.C249T p.C83C . . . GNAO1 2775 broad.mit.edu 36 16 54928229 54928229 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138736 exon6 c.G679A p.A227T . . . CDH13 1012 broad.mit.edu 36 16 81623266 81623266 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001257 exon3 c.C308T p.A103V . . . KRTAP4-3 85290 broad.mit.edu 36 17 36577630 36577630 + Silent SNP A G G novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033187 exon1 c.T321C p.S107S . . . TP53 7157 broad.mit.edu 36 17 7514748 7514748 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000546 exon10 c.1004delG p.R335fs . . . SMAD2 4087 broad.mit.edu 36 18 43625710 43625710 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001135937 exon9 c.C1189T p.R397X . . . DCC 1630 broad.mit.edu 36 18 48686613 48686613 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005215 exon3 c.G614A p.G205E . . . DSEL 92126 broad.mit.edu 36 18 63331899 63331899 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032160 exon2 c.G957A p.K319K . . . CIC 23152 broad.mit.edu 36 19 47488722 47488723 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015125 exon14 c.3340_3341insC p.A1114fs . . . ZNF439 90594 broad.mit.edu 36 19 11840195 11840195 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152262 exon3 c.G1311A p.P437P . . . MYO9B 4650 broad.mit.edu 36 19 17178576 17178576 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001130065 exon34 c.C5475T p.L1825L . . . DPY19L3 147991 broad.mit.edu 36 19 37664827 37664827 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001172774 exon19 c.G1992A p.M664I . . . ERF 2077 broad.mit.edu 36 19 47445688 47445688 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006494 exon4 c.G416T p.G139V . . . IGFL3 388555 broad.mit.edu 36 19 51319029 51319029 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_207393 exon3 c.A304T p.M102L . . . GRIN2D 2906 broad.mit.edu 36 19 53599989 53599989 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000836 exon3 c.C652T p.R218C . . . LRRC4B 94030 broad.mit.edu 36 19 55713100 55713100 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001080457 exon3 c.C1682T p.T561M . . . LILRB5 10990 broad.mit.edu 36 19 59452365 59452365 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001081442 exon3 c.C154A p.P52T . . . ZNF530 348327 broad.mit.edu 36 19 62809707 62809707 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020880 exon3 c.C1002T p.H334H . . . ZNF135 7694 broad.mit.edu 36 19 63271488 63271488 + Silent SNP T C C novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003436 exon5 c.T1860C p.C620C . . . MZF1 7593 broad.mit.edu 36 19 63774287 63774287 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198055 exon2 c.C282T p.G94G . . . ATP1A1 476 broad.mit.edu 36 1 116742146 116742146 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000701 exon15 c.A2087G p.Q696R . . . DHRS3 9249 broad.mit.edu 36 1 12561911 12561911 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004753 exon3 c.C456T p.F152F . . . NPR1 4881 broad.mit.edu 36 1 151928383 151928383 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_000906 exon17 c.C2660T p.A887V . . . PYHIN1 149628 broad.mit.edu 36 1 157178595 157178595 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 A A A G A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_198930 exon5 c.A757G p.K253E . . . PPP1R12B 4660 broad.mit.edu 36 1 200684829 200684829 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002481 exon13 c.G1757A p.R586H . . . MYBPH 4608 broad.mit.edu 36 1 201404672 201404672 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004997 exon9 c.C1402T p.R468W . . . CDK18 5129 broad.mit.edu 36 1 203765275 203765275 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_212503 exon13 c.G1272A p.L424L . . . PSEN2 5664 broad.mit.edu 36 1 225144363 225144363 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000447 exon9 c.C792T p.L264L . . . C1orf198 84886 broad.mit.edu 36 1 229045969 229045969 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001136494 exon5 c.C567T p.P189P . . . OR2T1 26696 broad.mit.edu 36 1 246636767 246636767 + Silent SNP C A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_030904 exon1 c.C849A p.G283G . . . MAN1C1 57134 broad.mit.edu 36 1 25948336 25948336 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_020379 exon4 c.G757A p.G253R . . . ELAVL4 1996 broad.mit.edu 36 1 50435718 50435718 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001144774 exon6 c.C765T p.G255G . . . USP24 23358 broad.mit.edu 36 1 55310169 55310169 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_015306 exon67 c.C7706T p.A2569V . . . C1orf173 127254 broad.mit.edu 36 1 74811466 74811466 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001002912 exon14 c.C2516A p.A839E . . . C20orf112 140688 broad.mit.edu 36 20 30507603 30507603 + De_novo_Start_InFrame SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080616 exon3 c.C366T p.Y122Y . . . CLDN8 9073 broad.mit.edu 36 21 30509853 30509853 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199328 exon1 c.T262A p.S88T . . . AQP12A 375318 broad.mit.edu 36 2 241280427 241280427 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198998 exon2 c.C387T p.H129H . . . KCNK3 3777 broad.mit.edu 36 2 26804564 26804564 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002246 exon2 c.C809T p.A270V . . . HAAO 23498 broad.mit.edu 36 2 42848246 42848246 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_012205 exon9 c.G775T p.G259W . . . NLGN1 22871 broad.mit.edu 36 3 175480995 175480995 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014932 exon7 c.G1680A p.T560T . . . LAMP3 27074 broad.mit.edu 36 3 184354380 184354380 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014398 exon2 c.C543T p.T181T . . . MASP1 5648 broad.mit.edu 36 3 188461347 188461347 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001031849 exon4 c.C423T p.D141D . . . SYNPO2 171024 broad.mit.edu 36 4 120198431 120198431 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G T G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_133477 exon5 c.G3680T p.R1227I . . . RXFP1 59350 broad.mit.edu 36 4 159745678 159745678 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 A A A T A A Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_021634 exon5 c.A401T p.Q134L . . . VEGFC 7424 broad.mit.edu 36 4 177887765 177887765 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 T T T C T T Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_005429 exon2 c.A277G p.N93D . . . WDFY3 23001 broad.mit.edu 36 4 85923173 85923173 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014991 exon25 c.C4141T p.R1381W . . . DNAH5 1767 broad.mit.edu 36 5 13883256 13883256 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001369 exon37 c.C6128T p.S2043L . . . PCDHGA2 56113 broad.mit.edu 36 5 140700501 140700501 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_032009 exon1 c.G1779A p.A593A . . . GRIA1 2890 broad.mit.edu 36 5 153046070 153046070 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001114183 exon8 c.C1122T p.D374D . . . CDH12 1010 broad.mit.edu 36 5 21787968 21787968 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_004061 exon15 c.G2020A p.D674N . . . MGC42105 167359 broad.mit.edu 36 5 43281761 43281761 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_153361 exon2 c.C127T p.R43C . . . ISL1 3670 broad.mit.edu 36 5 50719295 50719295 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002202 exon3 c.G433A p.D145N . . . PDE10A 10846 broad.mit.edu 36 6 165747111 165747111 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_006661 exon14 c.C1116T p.I372I . . . THBS2 7058 broad.mit.edu 36 6 169390870 169390870 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C T C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_003247 exon4 c.G176A p.R59H . . . ME1 4199 broad.mit.edu 36 6 83995366 83995366 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002395 exon10 c.C1030T p.R344C . . . SLC35A1 10559 broad.mit.edu 36 6 88275484 88275484 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006416 exon7 c.C758A p.A253E . . . MDN1 23195 broad.mit.edu 36 6 90560321 90560321 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_014611 exon5 c.C736T p.R246C . . . NOM1 64434 broad.mit.edu 36 7 156445309 156445309 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_138400 exon4 c.G1312A p.G438S . . . CARD11 84433 broad.mit.edu 36 7 2932915 2932915 + Silent SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032415 exon14 c.C1791T p.D597D . . . SDK1 221935 broad.mit.edu 36 7 4018285 4018285 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C C G C C Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152744 exon16 c.C2312G p.P771R . . . GNAI1 2770 broad.mit.edu 36 7 79678253 79678253 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_002069 exon6 c.G623A p.R208Q . . . OPRK1 4986 broad.mit.edu 36 8 54326020 54326020 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000912 exon2 c.C131T p.S44L . . . RP1 6101 broad.mit.edu 36 8 55703813 55703813 + Silent SNP A T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006269 exon4 c.A4818T p.T1606T . . . DCAF4L2 138009 broad.mit.edu 36 8 88955138 88955138 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_152418 exon1 c.C178T p.Q60X . . . DOCK8 81704 broad.mit.edu 36 9 329009 329009 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001190458 exon12 c.G1222A p.G408R . . . DAPK1 1612 broad.mit.edu 36 9 89454820 89454820 + Silent SNP C T T novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004938 exon16 c.C1593T p.A531A . . . PAK3 5063 broad.mit.edu 36 X 110324236 110324236 + Silent SNP C A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001128166 exon12 c.C1044A p.G348G . . . PDZD11 51248 broad.mit.edu 36 X 69425040 69425040 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016484 exon3 c.C136T p.R46X . . . CPXCR1 53336 broad.mit.edu 36 X 87895826 87895826 + Missense_Mutation SNP G A A rs41307393 unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G G A G G Unknown Valid Somatic Phase_I Capture 454_PCR_WGA Illumina HiSeq NM_001184771 exon3 c.G755A p.G252D . . . NLGN4Y 22829 broad.mit.edu 36 Y 15451303 15451303 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3842-01A-01W-0995-10 TCGA-AA-3842-10A-01W-0995-10 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014893 exon5 c.G1111A p.V371I . . .