Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer TranscriptID Exon ChromChange AAChange COSMIC_Codon COSMIC_Gene Drug_Target CNNM1 26507 broad.mit.edu 36 10 101080470 101080470 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020348 exon1 c.G1336A p.A446T . . . DNMBP 23268 broad.mit.edu 36 10 101705689 101705689 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015221 exon4 c.C1532T p.T511M . . . PDZD7 79955 broad.mit.edu 36 10 102779811 102779811 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195263 exon2 c.C156T p.N52N . . . ATRNL1 26033 broad.mit.edu 36 10 117049596 117049596 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207303 exon16 c.G2478A p.M826I . . . GFRA1 2674 broad.mit.edu 36 10 118020434 118020434 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145453 exon3 c.C224T p.A75V . . . EIF3A 8661 broad.mit.edu 36 10 120792023 120792023 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003750 exon19 c.G2999A p.R1000Q . . . PPAPDC1A 196051 broad.mit.edu 36 10 122324695 122324695 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001030059 exon6 c.G508A p.E170K . . . WDR11 55717 broad.mit.edu 36 10 122654830 122654830 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018117 exon26 c.A3203G p.Q1068R . . . CHST15 51363 broad.mit.edu 36 10 125795343 125795343 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015892 exon2 c.G376A p.E126K . . . CTBP2 1488 broad.mit.edu 36 10 126671858 126671858 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001329 exon9 c.G942A p.P314P . . . MKI67 4288 broad.mit.edu 36 10 129796242 129796242 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001145966 exon12 c.G2772A p.A924A . . . TUBGCP2 10844 broad.mit.edu 36 10 134952404 134952404 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006659 exon10 c.G1471A p.A491T . . . THNSL1 79896 broad.mit.edu 36 10 25353357 25353357 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024838 exon3 c.G1199T p.R400M . . . PDSS1 23590 broad.mit.edu 36 10 27053028 27053028 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014317 exon8 c.C801T p.T267T . . . LYZL2 119180 broad.mit.edu 36 10 30955168 30955168 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_183058 exon3 c.A308G p.Y103C . . . ARHGAP22 58504 broad.mit.edu 36 10 49337836 49337836 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021226 exon5 c.C556T p.R186C . . . TFAM 7019 broad.mit.edu 36 10 59818458 59818458 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003201 exon4 c.C314T p.A105V . . . CDH23 64072 broad.mit.edu 36 10 73244878 73244878 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171933 exon23 c.C3182A p.P1061H . . . USP54 159195 broad.mit.edu 36 10 74946649 74946649 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152586 exon18 c.T3541C p.W1181R . . . GRID1 2894 broad.mit.edu 36 10 87618853 87618853 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017551 exon6 c.G845A p.R282Q . . . BMPR1A 657 broad.mit.edu 36 10 88666929 88666929 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004329 exon9 c.A734G p.Y245C . . . KIAA1377 57562 broad.mit.edu 36 11 101339684 101339684 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020802 exon6 c.C2708T p.A903V . . . CASP5 838 broad.mit.edu 36 11 104376327 104376327 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136112 exon6 c.G862A p.G288R . . . HSPB2 3316 broad.mit.edu 36 11 111289729 111289729 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001541 exon2 c.G449A p.G150D . . . CEP164 22897 broad.mit.edu 36 11 116785666 116785666 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014956 exon30 c.C3871T p.P1291S . . . BCL9L 283149 broad.mit.edu 36 11 118283501 118283501 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182557 exon3 c.C433T p.R145W . . . MFRP 83552 broad.mit.edu 36 11 118721407 118721407 + Nonsense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031433 exon5 c.G574T p.E192X . . . MUC5B 727897 broad.mit.edu 36 11 1221472 1221472 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002458 exon31 c.C6786T p.T2262T . . . OR10S1 219873 broad.mit.edu 36 11 123352977 123352977 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004474 exon1 c.T632C p.L211P . . . OR10G4 390264 broad.mit.edu 36 11 123391779 123391779 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004462 exon1 c.C288T p.C96C . . . ACRV1 56 broad.mit.edu 36 11 125052954 125052954 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001612 exon2 c.G501A p.E167E . . . ARHGAP32 9743 broad.mit.edu 36 11 128344096 128344096 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014715 exon13 c.C5133A p.T1711T . . . KCNA4 3739 broad.mit.edu 36 11 29990599 29990599 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002233 exon2 c.G203A p.R68H . . . DCDC1 341019 broad.mit.edu 36 11 31284486 31284486 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181807 exon5 c.T460C p.F154L . . . CHST1 8534 broad.mit.edu 36 11 45628296 45628296 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003654 exon4 c.C754T p.R252W . . . ZNF408 79797 broad.mit.edu 36 11 46682625 46682625 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024741 exon5 c.G799A p.A267T . . . FNBP4 23360 broad.mit.edu 36 11 47698191 47698191 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015308 exon16 c.G2829A p.M943I . . . OR5D16 390144 broad.mit.edu 36 11 55363205 55363205 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005496 exon1 c.C402T p.Y134Y . . . OR52N2 390077 broad.mit.edu 36 11 5798307 5798307 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005174 exon1 c.G166A p.A56T . . . OR52L1 338751 broad.mit.edu 36 11 5964098 5964098 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005173 exon1 c.T639C p.N213N . . . MARK2 2011 broad.mit.edu 36 11 63424864 63424864 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017490 exon10 c.G826A p.E276K . . . CFL1 1072 broad.mit.edu 36 11 65380119 65380119 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005507 exon2 c.C174T p.G58G . . . TPP1 1200 broad.mit.edu 36 11 6593834 6593834 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000391 exon9 c.C1123T p.R375C . . . RNF121 55298 broad.mit.edu 36 11 71349475 71349475 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018320 exon3 c.C133T p.R45C . . . FOLR1 2348 broad.mit.edu 36 11 71584319 71584319 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016724 exon5 c.C373T p.R125C . . . FOLR2 2350 broad.mit.edu 36 11 71610334 71610334 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001113536 exon5 c.C648T p.N216N . . . STARD10 10809 broad.mit.edu 36 11 72147942 72147942 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006645 exon3 c.G340A p.V114M . . . LRRC32 2615 broad.mit.edu 36 11 76049355 76049355 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001128922 exon3 c.C930T p.S310S . . . TSKU 25987 broad.mit.edu 36 11 76185223 76185223 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015516 exon2 c.G915A p.L305L . . . ODZ4 26011 broad.mit.edu 36 11 78076910 78076910 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098816 exon29 c.C5097T p.S1699S . . . OR10A3 26496 broad.mit.edu 36 11 7917475 7917475 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003745 exon1 c.G169A p.V57I . . . PCF11 51585 broad.mit.edu 36 11 82573400 82573400 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015885 exon16 c.G4484A p.S1495N . . . MAML2 84441 broad.mit.edu 36 11 95464908 95464908 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032427 exon2 c.A1935G p.Q645Q . . . ALDH1L2 160428 broad.mit.edu 36 12 103942348 103942348 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001034173 exon23 c.T2756C p.V919A . . . CCDC64 92558 broad.mit.edu 36 12 118994827 118994827 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207311 exon6 c.G1219A p.A407T . . . VPS33A 65082 broad.mit.edu 36 12 121283383 121283383 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022916 exon12 c.G1526A p.R509Q . . . LRP6 4040 broad.mit.edu 36 12 12176101 12176101 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002336 exon18 c.T3891C p.S1297S . . . DNAH10 196385 broad.mit.edu 36 12 122896292 122896292 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207437 exon30 c.C5199T p.N1733N . . . SLC15A4 121260 broad.mit.edu 36 12 127865419 127865419 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145648 exon2 c.C696T p.C232C . . . RIMBP2 23504 broad.mit.edu 36 12 129450202 129450202 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015347 exon18 c.C3107T p.T1036M . . . POLE 5426 broad.mit.edu 36 12 131743898 131743898 + De_novo_Start_OutOfFrame SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006231 exon29 c.G3479A p.R1160H . . . GRIN2B 2904 broad.mit.edu 36 12 13608027 13608027 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000834 exon13 c.C3412T p.R1138X . . . GYS2 2998 broad.mit.edu 36 12 21620112 21620112 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021957 exon3 c.T450C p.N150N . . . TMTC1 83857 broad.mit.edu 36 12 29800044 29800044 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193451 exon4 c.C596T p.T199M . . . IPO8 10526 broad.mit.edu 36 12 30697276 30697276 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006390 exon18 c.C1966T p.L656F . . . PPHLN1 51535 broad.mit.edu 36 12 41065017 41065017 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_201438 exon6 c.C376T p.R126C . . . MLL2 8085 broad.mit.edu 36 12 47706793 47706793 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003482 exon48 c.G15223A p.G5075R . . . MLL2 8085 broad.mit.edu 36 12 47726397 47726397 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003482 exon16 c.G4496T p.G1499V . . . ACVR1B 91 broad.mit.edu 36 12 50671997 50671997 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020327 exon8 c.G1189A p.D397N . . . KRT75 9119 broad.mit.edu 36 12 51104697 51104697 + Silent SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004693 exon9 c.G1527T p.G509G . . . KRT73 319101 broad.mit.edu 36 12 51296337 51296337 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175068 exon2 c.C542A p.P181H . . . HNRNPA1 3178 broad.mit.edu 36 12 52961545 52961545 + Missense_Mutation SNP G A A rs61910737 unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031157 exon2 c.G124A p.D42N . . . DYRK2 8445 broad.mit.edu 36 12 66338109 66338109 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003583 exon2 c.G936A p.S312S . . . LGR5 8549 broad.mit.edu 36 12 70263727 70263727 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003667 exon18 c.G1670A p.G557D . . . DPPA3 359787 broad.mit.edu 36 12 7755467 7755467 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199286 exon1 c.C34A p.P12T . . . MYF6 4618 broad.mit.edu 36 12 79625749 79625749 + Silent SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002469 exon1 c.C120A p.T40T . . . ACSS3 79611 broad.mit.edu 36 12 80171306 80171306 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024560 exon14 c.A1809G p.V603V . . . APAF1 317 broad.mit.edu 36 12 97621323 97621323 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013229 exon18 c.C2477T p.T826M . . . ANO4 121601 broad.mit.edu 36 12 99892779 99892779 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178826 exon6 c.C478T p.R160C . . . C1QTNF9B 387911 broad.mit.edu 36 13 23363977 23363977 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001014442 exon4 c.C231T p.P77P . . . PARP4 143 broad.mit.edu 36 13 23927207 23927207 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006437 exon22 c.G2706A p.A902A . . . MTMR6 9107 broad.mit.edu 36 13 24721596 24721596 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004685 exon14 c.G1640A p.G547D . . . ATP8A2 51761 broad.mit.edu 36 13 25309398 25309398 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016529 exon29 c.A2852C p.Q951P . . . TRPC4 7223 broad.mit.edu 36 13 37123546 37123546 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135957 exon8 c.T1935C p.S645S . . . FREM2 341640 broad.mit.edu 36 13 38322215 38322215 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207361 exon9 c.C6420T p.S2140S . . . KBTBD6 89890 broad.mit.edu 36 13 40604125 40604125 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152903 exon1 c.G523A p.A175T . . . AHNAK2 113146 broad.mit.edu 36 14 104481656 104481656 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138420 exon7 c.T11177C p.M3726T . . . SALL2 6297 broad.mit.edu 36 14 21074865 21074865 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005407 exon1 c.C31T p.Q11X . . . REC8 9985 broad.mit.edu 36 14 23716524 23716524 + Nonsense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005132 exon11 c.G748T p.G250X . . . RIPK3 11035 broad.mit.edu 36 14 23878111 23878111 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_006871 exon3 c.C421G p.R141G . . . NFATC4 4776 broad.mit.edu 36 14 23909099 23909099 + Silent SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136022 exon3 c.C844A p.R282R . . . LRFN5 145581 broad.mit.edu 36 14 41425632 41425632 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152447 exon3 c.G54A p.Q18Q . . . LRFN5 145581 broad.mit.edu 36 14 41426506 41426506 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152447 exon3 c.G928T p.A310S . . . C14orf28 122525 broad.mit.edu 36 14 44444341 44444341 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017923 exon5 c.A771G p.T257T . . . PELI2 57161 broad.mit.edu 36 14 55826798 55826798 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021255 exon5 c.C567T p.G189G . . . C14orf101 54916 broad.mit.edu 36 14 56122319 56122319 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017799 exon3 c.G280A p.V94I . . . GPX2 2877 broad.mit.edu 36 14 64476143 64476143 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002083 exon2 c.C389A p.P130Q . . . PLEKHH1 57475 broad.mit.edu 36 14 67098835 67098835 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020715 exon7 c.A734G p.H245R . . . DCAF5 8816 broad.mit.edu 36 14 68591007 68591007 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003861 exon9 c.G2149A p.A717T . . . ZNF410 57862 broad.mit.edu 36 14 73434653 73434653 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021188 exon5 c.C515T p.A172V . . . SETD3 84193 broad.mit.edu 36 14 98935061 98935061 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032233 exon13 c.C1493T p.P498L . . . ATP10A 57194 broad.mit.edu 36 15 23491203 23491203 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024490 exon14 c.G2944A p.A982T . . . RYR3 6263 broad.mit.edu 36 15 31742194 31742194 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001036 exon35 c.C5171A p.P1724H . . . TMEM85 51234 broad.mit.edu 36 15 32308052 32308052 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016454 exon4 c.G486A p.S162S . . . INO80 54617 broad.mit.edu 36 15 39064853 39064853 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017553 exon32 c.G3896A p.R1299Q . . . DUOXA2 405753 broad.mit.edu 36 15 43196083 43196083 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207581 exon4 c.G418A p.A140T . . . SECISBP2L 9728 broad.mit.edu 36 15 47112461 47112461 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014701 exon4 c.G657T p.Q219H . . . DMXL2 23312 broad.mit.edu 36 15 49626747 49626747 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015263 exon7 c.T718C p.W240R . . . TEX9 374618 broad.mit.edu 36 15 54474322 54474322 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198524 exon9 c.A826G p.R276G . . . TLN2 83660 broad.mit.edu 36 15 60875501 60875501 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015059 exon44 c.G6006A p.A2002A . . . DIS3L 115752 broad.mit.edu 36 15 64402934 64402934 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143688 exon11 c.G1624A p.V542I . . . TLE3 7090 broad.mit.edu 36 15 68153967 68153967 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020908 exon6 c.G331A p.A111T . . . CYP11A1 1583 broad.mit.edu 36 15 72417998 72417998 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000781 exon8 c.C1401T p.I467I . . . NEIL1 79661 broad.mit.edu 36 15 73434050 73434050 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024608 exon9 c.G940A p.A314T . . . ACSBG1 23205 broad.mit.edu 36 15 76250919 76250919 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199377 exon14 c.G2085A p.T695T . . . DNAJA4 55466 broad.mit.edu 36 15 76359459 76359459 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001130183 exon6 c.G814A p.G272R . . . MESDC2 23184 broad.mit.edu 36 15 79058756 79058756 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015154 exon3 c.G564T p.Q188H . . . NTRK3 4916 broad.mit.edu 36 15 86600333 86600333 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001007156 exon2 c.G56A p.G19E . . . POLG 5428 broad.mit.edu 36 15 87663564 87663564 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001126131 exon19 c.C3003T p.G1001G . . . RHCG 51458 broad.mit.edu 36 15 87824519 87824519 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016321 exon4 c.A647G p.Q216R . . . IDH2 3418 broad.mit.edu 36 15 88435856 88435856 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002168 exon2 c.C140T p.A47V . . . IQGAP1 8826 broad.mit.edu 36 15 88735107 88735107 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003870 exon2 c.G153T p.K51N . . . IGF1R 3480 broad.mit.edu 36 15 97295627 97295627 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000875 exon16 c.G3008A p.R1003Q . . . ADAMTS17 170691 broad.mit.edu 36 15 98474722 98474722 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_139057 exon13 c.C1741T p.H581Y . . . LRRK1 79705 broad.mit.edu 36 15 99407412 99407412 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024652 exon23 c.G3340A p.G1114R . . . TRAF7 84231 broad.mit.edu 36 16 2153961 2153962 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032271 exon2 c.39_40insG p.S13fs . . . FAM57B 83723 broad.mit.edu 36 16 29949321 29949322 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_031478 exon1 c.29_30insG p.V10fs . . . GRIN2A 2903 broad.mit.edu 36 16 10181696 10181696 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001134408 exon2 c.C74T p.A25V . . . ABCC6 368 broad.mit.edu 36 16 16151572 16151572 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171 exon31 c.G4431A p.V1477V . . . SMG1 23049 broad.mit.edu 36 16 18787525 18787525 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015092 exon21 c.G2851A p.A951T . . . ACSM1 116285 broad.mit.edu 36 16 20601156 20601156 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052956 exon3 c.G534A p.Q178Q . . . LOC81691 81691 broad.mit.edu 36 16 20732068 20732068 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199053 exon3 c.A194C p.Q65P . . . VWA3A 146177 broad.mit.edu 36 16 22067007 22067007 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173615 exon28 c.G2863A p.V955I . . . CACNG3 10368 broad.mit.edu 36 16 24273771 24273771 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006539 exon3 c.G412A p.A138T . . . SPNS1 83985 broad.mit.edu 36 16 28902046 28902046 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142449 exon8 c.C1032T p.A344A . . . ZNF668 79759 broad.mit.edu 36 16 30980655 30980655 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172669 exon4 c.C1164T p.R388R . . . BCKDK 10295 broad.mit.edu 36 16 31029310 31029310 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122957 exon7 c.C631T p.H211Y . . . PPL 5493 broad.mit.edu 36 16 4875790 4875790 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002705 exon22 c.C2867T p.T956M . . . IRX3 79191 broad.mit.edu 36 16 52875688 52875688 + Silent SNP G C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024336 exon3 c.C1422G p.L474L . . . CMTM2 146225 broad.mit.edu 36 16 65178470 65178470 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199317 exon2 c.C355T p.R119X . . . FAM65A 79567 broad.mit.edu 36 16 66133989 66133989 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001193522 exon13 c.G1811A p.S604N . . . HAS3 3038 broad.mit.edu 36 16 67706222 67706222 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005329 exon4 c.G1214A p.R405H . . . NOB1 28987 broad.mit.edu 36 16 68336382 68336382 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014062 exon8 c.T864C p.C288C . . . SF3B3 23450 broad.mit.edu 36 16 69120594 69120594 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012426 exon3 c.G388A p.V130I . . . HYDIN 54768 broad.mit.edu 36 16 69685315 69685315 + Missense_Mutation SNP C T T rs7200485 byCluster;byFrequency;by2Hit2Allele;byHapMap TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032821 exon11 c.G1352A p.R451Q . . . OSGIN1 29948 broad.mit.edu 36 16 82551789 82551789 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182980 exon4 c.C319A p.L107I . . . TAF1C 9013 broad.mit.edu 36 16 82774399 82774399 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139353 exon5 c.G159A p.A53A . . . ANKRD11 29123 broad.mit.edu 36 16 87877464 87877464 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013275 exon9 c.G2987A p.G996D . . . FAM83G 644815 broad.mit.edu 36 17 18821853 18821854 + Frame_Shift_Ins INS - A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001039999 exon5 c.1851_1852insT p.E617fs . . . ULK2 9706 broad.mit.edu 36 17 19627645 19627645 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142610 exon22 c.T2417C p.I806T . . . ULK2 9706 broad.mit.edu 36 17 19645765 19645765 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142610 exon16 c.C1358T p.S453F . . . SUPT6H 6830 broad.mit.edu 36 17 24044919 24044919 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003170 exon28 c.G3712A p.G1238S . . . ASPA 443 broad.mit.edu 36 17 3349022 3349022 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000049 exon6 c.G832A p.V278M . . . IGFBP4 3487 broad.mit.edu 36 17 35863815 35863815 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001552 exon3 c.G617A p.R206H . . . SMARCE1 6605 broad.mit.edu 36 17 36040629 36040629 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003079 exon10 c.G890A p.R297H . . . KRT25 147183 broad.mit.edu 36 17 36164963 36164963 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181534 exon1 c.C87A p.S29R . . . KRT34 3885 broad.mit.edu 36 17 36789225 36789225 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021013 exon5 c.G908T p.S303I . . . DHX58 79132 broad.mit.edu 36 17 37511507 37511507 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024119 exon9 c.G1024A p.A342T . . . MPP3 4356 broad.mit.edu 36 17 39246905 39246905 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001932 exon16 c.C1255T p.H419Y . . . SLC4A1 6521 broad.mit.edu 36 17 39690950 39690950 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000342 exon11 c.G1212T p.Q404H . . . GRN 2896 broad.mit.edu 36 17 39783186 39783186 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002087 exon5 c.G414A p.T138T . . . DBF4B 80174 broad.mit.edu 36 17 40181349 40181349 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025104 exon13 c.C1179T p.C393C . . . PELP1 27043 broad.mit.edu 36 17 4522819 4522819 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014389 exon16 c.T2216C p.I739T . . . PELP1 27043 broad.mit.edu 36 17 4523433 4523433 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014389 exon15 c.C1706T p.P569L . . . COL1A1 1277 broad.mit.edu 36 17 45622939 45622939 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000088 exon34 c.C2361T p.S787S . . . MYCBPAP 84073 broad.mit.edu 36 17 45950911 45950911 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032133 exon5 c.G608A p.R203Q MYCBPAP,urinary_tract,bladder,Substitution - Missense,0 . . ZFP3 124961 broad.mit.edu 36 17 4936827 4936827 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153018 exon2 c.A1304G p.E435G . . . NLRP1 22861 broad.mit.edu 36 17 5365713 5365713 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033007 exon12 c.C3548T p.S1183F . . . TEX14 56155 broad.mit.edu 36 17 54031675 54031675 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_198393 exon14 c.A2030C p.E677A . . . DVL2 1856 broad.mit.edu 36 17 7070465 7070465 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004422 exon14 c.G1761T p.E587D . . . DVL2 1856 broad.mit.edu 36 17 7071485 7071485 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004422 exon12 c.G1325A p.R442H . . . TRIM47 91107 broad.mit.edu 36 17 71382693 71382693 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033452 exon6 c.G1383A p.S461S . . . EIF5A 1984 broad.mit.edu 36 17 7155424 7155424 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143761 exon4 c.T302G p.L101R . . . SYNGR2 9144 broad.mit.edu 36 17 73678498 73678498 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004710 exon2 c.C105T p.F35F . . . RNF213 57674 broad.mit.edu 36 17 75936073 75936073 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020914 exon30 c.G9490A p.A3164T . . . CCDC137 339230 broad.mit.edu 36 17 77247774 77247774 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199287 exon3 c.G383A p.R128H . . . CCDC137 339230 broad.mit.edu 36 17 77249239 77249239 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_199287 exon4 c.G558A p.R186R . . . CCDC57 284001 broad.mit.edu 36 17 77730276 77730276 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198082 exon9 c.G1290A p.W430X . . . GAS7 8522 broad.mit.edu 36 17 9770720 9770720 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003644 exon6 c.G557A p.R186H . . . ELP2 55250 broad.mit.edu 36 18 31980309 31980309 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018255 exon11 c.G1092A p.A364A . . . TCEB3B 51224 broad.mit.edu 36 18 42813537 42813537 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016427 exon1 c.C2097A p.S699R . . . DCC 1630 broad.mit.edu 36 18 48846502 48846502 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005215 exon7 c.A1229G p.Q410R . . . ZFP161 7541 broad.mit.edu 36 18 5281249 5281249 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003409 exon3 c.C958T p.L320L . . . KDSR 2531 broad.mit.edu 36 18 59150093 59150093 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002035 exon10 c.C901T p.R301C . . . DSEL 92126 broad.mit.edu 36 18 63330422 63330422 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_032160 exon2 c.C2434T p.R812X . . . SOCS6 9306 broad.mit.edu 36 18 66143639 66143639 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004232 exon2 c.C755T p.A252V . . . LAMA1 284217 broad.mit.edu 36 18 7030083 7030083 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005559 exon10 c.G1414C p.V472L . . . CNDP2 55748 broad.mit.edu 36 18 70324150 70324150 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018235 exon4 c.C291T p.Y97Y . . . MBP 4155 broad.mit.edu 36 18 72825754 72825754 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002385 exon5 c.G481A p.D161N . . . KIAA0802 23255 broad.mit.edu 36 18 8774518 8774518 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015210 exon6 c.C1408T p.R470C . . . ZNF491 126069 broad.mit.edu 36 19 11778053 11778053 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152356 exon3 c.G285A p.R95R . . . ZNF44 51710 broad.mit.edu 36 19 12244628 12244628 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016264 exon4 c.G1442A p.C481Y . . . C19orf53 28974 broad.mit.edu 36 19 13749962 13749962 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014047 exon3 c.G250A p.A84T . . . OR10H2 26538 broad.mit.edu 36 19 15699976 15699976 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013939 exon1 c.C123T p.G41G . . . BST2 684 broad.mit.edu 36 19 17375553 17375553 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004335 exon4 c.C494T p.A165V . . . SLC27A1 376497 broad.mit.edu 36 19 17473144 17473144 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198580 exon11 c.G1699A p.A567T . . . ZNF555 148254 broad.mit.edu 36 19 2804130 2804130 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172775 exon4 c.G1064A p.R355Q . . . TSHZ3 57616 broad.mit.edu 36 19 36460241 36460241 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020856 exon2 c.G2298A p.P766P . . . MLL4 9757 broad.mit.edu 36 19 40911961 40911961 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014727 exon22 c.G4841A p.W1614X . . . ZNF345 25850 broad.mit.edu 36 19 42060213 42060213 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003419 exon3 c.G641A p.G214D . . . ZNF570 148268 broad.mit.edu 36 19 42667707 42667707 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_144694 exon5 c.G1343A p.G448E . . . HNRNPL 3191 broad.mit.edu 36 19 44028452 44028452 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005335 exon3 c.G106A p.A36T . . . PAPL 390928 broad.mit.edu 36 19 44281521 44281521 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001004318 exon4 c.G404A p.R135H . . . GMFG 9535 broad.mit.edu 36 19 44517924 44517924 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004877 exon2 c.G91A p.A31T . . . TIMM50 92609 broad.mit.edu 36 19 44668246 44668246 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001563 exon6 c.G760A p.V254I . . . SHKBP1 92799 broad.mit.edu 36 19 45780171 45780171 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138392 exon10 c.G919T p.G307W . . . NUMBL 9253 broad.mit.edu 36 19 45880533 45880533 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004756 exon5 c.C339T p.S113S . . . GRIK5 2901 broad.mit.edu 36 19 47238546 47238546 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002088 exon11 c.C1471T p.R491W . . . TICAM1 148022 broad.mit.edu 36 19 4768991 4768991 + Silent SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182919 exon2 c.G399T p.L133L . . . PSG2 5670 broad.mit.edu 36 19 48267868 48267868 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031246 exon4 c.C788T p.A263V . . . CADM4 199731 broad.mit.edu 36 19 48822825 48822825 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145296 exon4 c.C450A p.S150S . . . PLAUR 5329 broad.mit.edu 36 19 48848227 48848227 + Silent SNP G T T rs4251912 byCluster;byFrequency TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005377 exon5 c.C609A p.T203T . . . ZNF226 7769 broad.mit.edu 36 19 49373536 49373536 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001032372 exon6 c.G2281A p.G761S . . . ZNF227 7770 broad.mit.edu 36 19 49431085 49431085 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182490 exon6 c.C662T p.T221I . . . LIG1 3978 broad.mit.edu 36 19 53318319 53318319 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000234 exon22 c.C2073T p.G691G . . . PPFIA3 8541 broad.mit.edu 36 19 54334811 54334811 + Silent SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003660 exon17 c.C2151A p.P717P . . . SAFB 6294 broad.mit.edu 36 19 5615064 5615064 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002967 exon16 c.C2185T p.R729W . . . SIGLEC8 27181 broad.mit.edu 36 19 56652751 56652751 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014442 exon2 c.C509A p.S170Y . . . LILRB2 10288 broad.mit.edu 36 19 59475105 59475105 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080978 exon5 c.A565G p.N189D . . . LENG8 114823 broad.mit.edu 36 19 59661367 59661367 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052925 exon15 c.G2095A p.A699T . . . NLRP11 204801 broad.mit.edu 36 19 61013423 61013423 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145007 exon5 c.G365A p.R122H . . . TRIM28 10155 broad.mit.edu 36 19 63753132 63753132 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005762 exon15 c.G2111A p.C704Y . . . MUC16 94025 broad.mit.edu 36 19 8877998 8877998 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon27 c.C37997A p.P12666H . . . MUC16 94025 broad.mit.edu 36 19 8935093 8935093 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024690 exon3 c.C13353A p.S4451R . . . CRTC1 23373 broad.mit.edu 36 19 18748993 18748993 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015321 exon14 c.1706delC p.S569fs . . . SAFB2 9667 broad.mit.edu 36 19 5538282 5538282 + Frame_Shift_Del DEL G - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014649 exon21 c.2834delC p.P945fs . . . WDR47 22911 broad.mit.edu 36 1 109325985 109325985 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014969 exon13 c.G2294A p.W765X . . . KCND3 3752 broad.mit.edu 36 1 112325923 112325923 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004980 exon2 c.T949C p.C317R . . . KCND3 3752 broad.mit.edu 36 1 112326218 112326218 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004980 exon2 c.C654T p.C218C . . . MTHFR 4524 broad.mit.edu 36 1 11777437 11777437 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005957 exon7 c.G1102T p.A368S . . . MTHFR 4524 broad.mit.edu 36 1 11777984 11777984 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005957 exon6 c.C789A p.H263Q . . . SNX27 81609 broad.mit.edu 36 1 149878094 149878094 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030918 exon2 c.G418A p.A140T . . . FLG 2312 broad.mit.edu 36 1 150546368 150546368 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002016 exon3 c.C7618T p.R2540W . . . INTS3 65123 broad.mit.edu 36 1 152012117 152012117 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_023015 exon29 c.G2987A p.R996Q . . . ATP8B2 57198 broad.mit.edu 36 1 152576524 152576524 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005855 exon12 c.G914A p.R305H . . . ADAM15 8751 broad.mit.edu 36 1 153297162 153297162 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_207195 exon14 c.C1628T p.A543V . . . GPATCH4 54865 broad.mit.edu 36 1 154832511 154832511 + Silent SNP C T T rs8937 unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015590 exon7 c.G477A p.G159G . . . CDK11B 984 broad.mit.edu 36 1 1562176 1562176 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033486 exon16 c.C1740A p.T580T . . . APCS 325 broad.mit.edu 36 1 157824578 157824578 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001639 exon2 c.C128T p.T43I . . . DDI2 84301 broad.mit.edu 36 1 15837417 15837417 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032341 exon5 c.A661T p.I221L . . . LY9 4063 broad.mit.edu 36 1 159050261 159050261 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_002348 exon3 c.C666T p.C222C . . . MGST3 4259 broad.mit.edu 36 1 163891246 163891246 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004528 exon6 c.C340T p.R114X . . . C1orf89 79363 broad.mit.edu 36 1 16432819 16432819 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030907 exon2 c.C140T p.P47L . . . DUSP27 92235 broad.mit.edu 36 1 165364176 165364176 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080426 exon5 c.T3184C p.W1062R . . . MYOC 4653 broad.mit.edu 36 1 169871889 169871889 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000261 exon3 c.C1314T p.T438T . . . ANKRD45 339416 broad.mit.edu 36 1 171882678 171882678 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198493 exon3 c.G426A p.R142R . . . TNN 63923 broad.mit.edu 36 1 173359166 173359166 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022093 exon12 c.C2658T p.D886D . . . CEP350 9857 broad.mit.edu 36 1 178232513 178232513 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014810 exon6 c.C598T p.R200X . . . CACNA1E 777 broad.mit.edu 36 1 180026288 180026288 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000721 exon44 c.C5871T p.D1957D . . . HMCN1 83872 broad.mit.edu 36 1 184381548 184381548 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031935 exon93 c.C14478T p.C4826C . . . TROVE2 6738 broad.mit.edu 36 1 191318030 191318030 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001173524 exon7 c.A1295G p.Q432R . . . NAV1 89796 broad.mit.edu 36 1 200048922 200048922 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001167738 exon25 c.C4071T p.G1357G . . . MDM4 4194 broad.mit.edu 36 1 202782576 202782576 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002393 exon10 c.T851C p.L284P . . . LGTN 1939 broad.mit.edu 36 1 204842327 204842327 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006893 exon7 c.C888T p.H296H . . . CAMK1G 57172 broad.mit.edu 36 1 207840039 207840039 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020439 exon3 c.C181T p.R61W . . . LAMB3 3914 broad.mit.edu 36 1 207869879 207869879 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001017402 exon9 c.G958A p.G320R . . . FLVCR1 28982 broad.mit.edu 36 1 211129132 211129132 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014053 exon8 c.T1435C p.L479L . . . MARK1 4139 broad.mit.edu 36 1 218839794 218839794 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018650 exon5 c.G390A p.K130K . . . DUSP10 11221 broad.mit.edu 36 1 219978944 219978944 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007207 exon2 c.C766A p.L256I . . . ACTA1 58 broad.mit.edu 36 1 227635421 227635421 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001100 exon2 c.G65A p.G22D . . . NUP133 55746 broad.mit.edu 36 1 227679991 227679991 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018230 exon13 c.C1732T p.R578W . . . NID1 4811 broad.mit.edu 36 1 234255854 234255854 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002508 exon8 c.G1949A p.R650H . . . ACTN2 88 broad.mit.edu 36 1 234972946 234972946 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001103 exon11 c.C1235T p.T412M . . . PLD5 200150 broad.mit.edu 36 1 240518413 240518413 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001195811 exon3 c.A183G p.S61S . . . IL28RA 163702 broad.mit.edu 36 1 24368556 24368556 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170743 exon3 c.C305T p.T102M . . . FAM76A 199870 broad.mit.edu 36 1 27933253 27933253 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001143913 exon5 c.C428T p.A143V . . . CCDC27 148870 broad.mit.edu 36 1 3670206 3670206 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152492 exon8 c.G1398A p.T466T . . . KIAA0562 9731 broad.mit.edu 36 1 3751363 3751363 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014704 exon6 c.C534T p.S178S . . . RHBDL2 54933 broad.mit.edu 36 1 39134306 39134306 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017821 exon5 c.T531C p.F177F . . . KLF17 128209 broad.mit.edu 36 1 44368929 44368929 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_173484 exon3 c.C1084T p.Q362X . . . LRRC41 10489 broad.mit.edu 36 1 46523855 46523855 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006369 exon4 c.G1261A p.A421T . . . MOBKL2C 148932 broad.mit.edu 36 1 46851168 46851168 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145279 exon2 c.G569A p.R190H . . . CYP4B1 1580 broad.mit.edu 36 1 47053491 47053491 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099772 exon8 c.C1041T p.R347R . . . DAB1 1600 broad.mit.edu 36 1 57374900 57374900 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021080 exon6 c.C210T p.G70G . . . TNNI3K 51086 broad.mit.edu 36 1 74782220 74782220 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015978 exon25 c.G2474A p.C825Y . . . CRYZ 1429 broad.mit.edu 36 1 74961507 74961507 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001889 exon3 c.C147T p.P49P . . . SNX5 27131 broad.mit.edu 36 20 17876269 17876269 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152227 exon12 c.C939T p.T313T . . . C20orf3 57136 broad.mit.edu 36 20 24900173 24900173 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020531 exon5 c.G461A p.G154D . . . VSX1 30813 broad.mit.edu 36 20 25008112 25008112 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_199425 exon2 c.G463A p.A155T . . . ZNF337 26152 broad.mit.edu 36 20 25604779 25604779 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015655 exon5 c.A1145C p.K382T . . . MYLK2 85366 broad.mit.edu 36 20 29882350 29882350 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033118 exon9 c.G1292A p.R431Q . . . FAM83C 128876 broad.mit.edu 36 20 33338795 33338795 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178468 exon4 c.C1201T p.P401S . . . CEP250 11190 broad.mit.edu 36 20 33555181 33555181 + Missense_Mutation SNP G A A rs73903079 unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007186 exon30 c.G5570A p.R1857H . . . CHD6 84181 broad.mit.edu 36 20 39576913 39576913 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032221 exon4 c.T647C p.L216P . . . KCNB1 3745 broad.mit.edu 36 20 47423233 47423233 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004975 exon2 c.C2271T p.D757D . . . MYT1 4661 broad.mit.edu 36 20 62307390 62307390 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_004535 exon6 c.G190T p.G64C . . . PLCB4 5332 broad.mit.edu 36 20 9365789 9365789 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000933 exon26 c.A2718T p.E906D . . . CTSA 5476 broad.mit.edu 36 20 43957075 43957075 + Frame_Shift_Del DEL C - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000308 exon11 c.1038delC p.D346fs . . . CTCFL 140690 broad.mit.edu 36 20 55532323 55532324 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 AG AG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_080618 exon2 c.344_345del p.115_115del . . . MORC3 23515 broad.mit.edu 36 21 36633049 36633049 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015358 exon5 c.G568T p.G190C . . . ABCG1 9619 broad.mit.edu 36 21 42575535 42575535 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207629 exon6 c.G662A p.R221H . . . RSPH1 89765 broad.mit.edu 36 21 42779579 42779579 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080860 exon4 c.C336A p.T112T . . . KRTAP10-6 386674 broad.mit.edu 36 21 44836733 44836733 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198688 exon1 c.C61A p.L21I . . . DIP2A 23181 broad.mit.edu 36 21 46742962 46742962 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001146114 exon3 c.G251A p.R84Q . . . SUMO3 6612 broad.mit.edu 36 21 45053343 45053343 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . CDC45 8318 broad.mit.edu 36 22 17863525 17863525 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178010 exon8 c.C660T p.Y220Y . . . GNB1L 54584 broad.mit.edu 36 22 18169724 18169724 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_053004 exon7 c.C532T p.R178C . . . BCR 613 broad.mit.edu 36 22 21985111 21985111 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_021574 exon19 c.C3228T p.D1076D . . . ADORA2A 135 broad.mit.edu 36 22 23166882 23166882 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000675 exon3 c.C664T p.R222W . . . SLC35E4 339665 broad.mit.edu 36 22 29372911 29372911 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001001479 exon2 c.G946A p.A316T . . . SUN2 25777 broad.mit.edu 36 22 37474713 37474713 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015374 exon7 c.G636A p.T212T . . . PRR5-ARHGAP8 553158 broad.mit.edu 36 22 43600086 43600086 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181334 exon10 c.C911A p.P304Q . . . ZBED4 9889 broad.mit.edu 36 22 48664049 48664049 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014838 exon2 c.C735T p.C245C . . . RRP7A 27341 broad.mit.edu 36 22 41242123 41242123 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . . FAM123C 205147 broad.mit.edu 36 2 131236309 131236310 + Frame_Shift_Ins INS - C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001105193 exon2 c.194_195insC p.C65fs . . . UXS1 80146 broad.mit.edu 36 2 106128186 106128186 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025076 exon6 c.G349A p.V117M . . . MERTK 10461 broad.mit.edu 36 2 112502506 112502506 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006343 exon19 c.G2594A p.R865Q . . . MARCO 8685 broad.mit.edu 36 2 119468561 119468561 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006770 exon17 c.G1558A p.V520I . . . YSK4 80122 broad.mit.edu 36 2 135461665 135461665 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025052 exon7 c.C1247A p.A416D . . . MBD5 55777 broad.mit.edu 36 2 148959949 148959949 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018328 exon11 c.C3014A p.A1005D . . . TANK 10010 broad.mit.edu 36 2 161744483 161744483 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199135 exon2 c.G64A p.D22N . . . COBLL1 22837 broad.mit.edu 36 2 165259647 165259647 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014900 exon12 c.G2615A p.G872D . . . CSRNP3 80034 broad.mit.edu 36 2 166222572 166222572 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001172173 exon5 c.T204C p.S68S . . . XIRP2 129446 broad.mit.edu 36 2 167816076 167816076 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199144 exon7 c.C9262G p.Q3088E . . . LRP2 4036 broad.mit.edu 36 2 169752798 169752798 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004525 exon49 c.C9256T p.R3086C . . . FASTKD1 79675 broad.mit.edu 36 2 170111414 170111414 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024622 exon8 c.C1261T p.R421C . . . METTL5 29081 broad.mit.edu 36 2 170385999 170385999 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014168 exon3 c.C255T p.D85D . . . ATF2 1386 broad.mit.edu 36 2 175647703 175647703 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001880 exon14 c.C1398A p.T466T . . . TTN 7273 broad.mit.edu 36 2 179285125 179285125 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133378 exon93 c.G23945T p.C7982F . . . SF3B1 23451 broad.mit.edu 36 2 197982793 197982793 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_012433 exon7 c.G850A p.A284T . . . PTH2R 5746 broad.mit.edu 36 2 209061988 209061988 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005048 exon11 c.G1083T p.L361L . . . LANCL1 10314 broad.mit.edu 36 2 211028110 211028110 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001136574 exon4 c.A373G p.N125D . . . SLC11A1 6556 broad.mit.edu 36 2 218957249 218957249 + Missense_Mutation SNP C G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C G C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000578 exon3 c.C190G p.P64A . . . FAM134A 79137 broad.mit.edu 36 2 219755302 219755302 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024293 exon9 c.G1339A p.G447S . . . ACCN4 55515 broad.mit.edu 36 2 220110262 220110262 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018674 exon8 c.T1757C p.L586P . . . SPHKAP 80309 broad.mit.edu 36 2 228589661 228589661 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142644 exon7 c.T4153A p.S1385T . . . ATG16L1 55054 broad.mit.edu 36 2 233837448 233837448 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017974 exon4 c.A387G p.A129A . . . TRPM8 79054 broad.mit.edu 36 2 234543693 234543693 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024080 exon17 c.G2239A p.A747T . . . COL6A3 1293 broad.mit.edu 36 2 237952228 237952228 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_057167 exon5 c.G1669A p.A557T . . . NCOA1 8648 broad.mit.edu 36 2 24804717 24804717 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003743 exon14 c.T2754C p.C918C . . . DNMT3A 1788 broad.mit.edu 36 2 25323093 25323093 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_175629 exon10 c.T1179C p.S393S . . . DNMT3A 1788 broad.mit.edu 36 2 25324424 25324424 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_175629 exon7 c.G841A p.E281K . . . CCDC121 79635 broad.mit.edu 36 2 27704092 27704092 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142683 exon2 c.C565T p.R189X . . . GALNT14 79623 broad.mit.edu 36 2 31069331 31069331 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024572 exon2 c.G176A p.R59Q . . . THADA 63892 broad.mit.edu 36 2 43311864 43311864 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001083953 exon38 c.A5589G p.P1863P . . . TSPYL6 388951 broad.mit.edu 36 2 54336277 54336277 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001003937 exon1 c.C516T p.D172D . . . B3GNT2 10678 broad.mit.edu 36 2 62303354 62303354 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006577 exon2 c.G495T p.W165C . . . OTX1 5013 broad.mit.edu 36 2 63136859 63136859 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199770 exon5 c.C969T p.G323G . . . PELI1 57162 broad.mit.edu 36 2 64175738 64175738 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020651 exon7 c.A859G p.N287D . . . AAK1 22848 broad.mit.edu 36 2 69576644 69576644 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014911 exon17 c.C2342A p.P781H . . . SMYD5 10322 broad.mit.edu 36 2 73300791 73300791 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006062 exon3 c.C310T p.R104C . . . CTNNA2 1496 broad.mit.edu 36 2 79954749 79954749 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004389 exon6 c.G625A p.A209T . . . TGOLN2 10618 broad.mit.edu 36 2 85407621 85407621 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006464 exon2 c.C745A p.P249T . . . ELMOD3 84173 broad.mit.edu 36 2 85470860 85470860 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001135021 exon14 c.C904T p.Q302X . . . SFTPB 6439 broad.mit.edu 36 2 85746328 85746328 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198843 exon6 c.G530A p.R177Q . . . ACTR1B 10120 broad.mit.edu 36 2 97641424 97641424 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005735 exon6 c.T555C p.I185I . . . REV1 51455 broad.mit.edu 36 2 99386590 99386590 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016316 exon19 c.G3166T p.V1056L . . . ACVR2A 92 broad.mit.edu 36 2 148400156 148400156 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A - A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001616 exon10 c.1303delA p.K435fs . . . GPR156 165829 broad.mit.edu 36 3 121382698 121382698 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001168271 exon7 c.T885C p.C295C . . . KBTBD12 166348 broad.mit.edu 36 3 129125542 129125542 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207335 exon1 c.C948T p.Y316Y . . . IQSEC1 9922 broad.mit.edu 36 3 12925917 12925917 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014869 exon11 c.C2476T p.R826W . . . SEC61A1 29927 broad.mit.edu 36 3 129266475 129266475 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_013336 exon8 c.C682T p.R228X . . . C3orf25 90288 broad.mit.edu 36 3 130610377 130610377 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207307 exon6 c.C1050T p.S350S . . . DNAJC13 23317 broad.mit.edu 36 3 133661888 133661888 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015268 exon14 c.T1554C p.H518H . . . SERPINI1 5274 broad.mit.edu 36 3 168989852 168989852 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122752 exon2 c.T242A p.L81Q . . . LRRC31 79782 broad.mit.edu 36 3 171048602 171048602 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_024727 exon8 c.G1327T p.A443S . . . TNFSF10 8743 broad.mit.edu 36 3 173709779 173709779 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003810 exon4 c.G340A p.V114M . . . TTC14 151613 broad.mit.edu 36 3 181803381 181803381 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_133462 exon2 c.A170T p.K57M . . . ECE2 9718 broad.mit.edu 36 3 185477444 185477444 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014693 exon3 c.C551A p.A184D . . . ECE2 9718 broad.mit.edu 36 3 185477805 185477805 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014693 exon4 c.G689A p.R230Q . . . CHRD 8646 broad.mit.edu 36 3 185588427 185588427 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003741 exon20 c.G2466T p.E822D . . . MASP1 5648 broad.mit.edu 36 3 188486481 188486481 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031849 exon2 c.C63T p.T21T . . . CRTAP 10491 broad.mit.edu 36 3 33150682 33150682 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006371 exon6 c.C1073A p.A358E . . . XIRP1 165904 broad.mit.edu 36 3 39203614 39203614 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_194293 exon2 c.G2327A p.R776Q . . . KBTBD5 131377 broad.mit.edu 36 3 42703092 42703092 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152393 exon1 c.G978T p.E326D . . . FYCO1 79443 broad.mit.edu 36 3 45983503 45983503 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024513 exon8 c.C2327T p.A776V . . . ITPR1 3708 broad.mit.edu 36 3 4687493 4687493 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099952 exon20 c.A2087G p.E696G . . . COL7A1 1294 broad.mit.edu 36 3 48582603 48582603 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000094 exon98 c.C7453T p.R2485C . . . IMPDH2 3615 broad.mit.edu 36 3 49037097 49037097 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000884 exon12 c.C1438T p.R480X . . . IP6K1 9807 broad.mit.edu 36 3 49740642 49740642 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153273 exon5 c.G690A p.R230R . . . CAMKV 79012 broad.mit.edu 36 3 49872118 49872118 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_024046 exon11 c.C1143T p.P381P . . . DOCK3 1795 broad.mit.edu 36 3 51287556 51287556 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon25 c.G2514A p.P838P . . . DOCK3 1795 broad.mit.edu 36 3 51367484 51367484 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004947 exon41 c.C4198T p.R1400X . . . RRP9 9136 broad.mit.edu 36 3 51943720 51943720 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004704 exon12 c.G1147A p.A383T . . . TWF2 11344 broad.mit.edu 36 3 52241000 52241000 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007284 exon3 c.C282A p.P94P . . . PHF7 51533 broad.mit.edu 36 3 52432302 52432302 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_016483 exon11 c.C1075T p.R359C . . . ERC2 26059 broad.mit.edu 36 3 55959537 55959537 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015576 exon12 c.C2353T p.R785C . . . C3orf67 200844 broad.mit.edu 36 3 58828678 58828678 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198463 exon10 c.C665T p.P222L . . . ROBO1 6091 broad.mit.edu 36 3 78749572 78749572 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002941 exon27 c.C4185A p.G1395G . . . EPHA3 2042 broad.mit.edu 36 3 89563075 89563075 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005233 exon13 c.G2222A p.G741D . . . HADH 3033 broad.mit.edu 36 4 109173866 109173866 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001184705 exon8 c.C846T p.V282V . . . ANK2 287 broad.mit.edu 36 4 114494228 114494228 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001148 exon38 c.C5005T p.L1669L . . . NDST4 64579 broad.mit.edu 36 4 116075856 116075856 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022569 exon6 c.A1491C p.K497N . . . NDST3 9348 broad.mit.edu 36 4 119194845 119194845 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004784 exon2 c.C332T p.A111V . . . PRSS12 8492 broad.mit.edu 36 4 119456810 119456810 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003619 exon6 c.G1267A p.V423M . . . KIAA1109 84162 broad.mit.edu 36 4 123494544 123494544 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015312 exon80 c.C14227T p.R4743C . . . FBXW7 55294 broad.mit.edu 36 4 153471357 153471357 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018315 exon6 c.C859T p.R287X FBXW7,central_nervous_system,brain,Substitution - Nonsense,0 . . DCHS2 54798 broad.mit.edu 36 4 155474007 155474007 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001142552 exon5 c.C2803T p.R935W . . . TAPT1 202018 broad.mit.edu 36 4 15797594 15797594 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_153365 exon6 c.C754T p.H252Y . . . GLRB 2743 broad.mit.edu 36 4 158261224 158261224 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166060 exon3 c.A189G p.L63L . . . RAPGEF2 9693 broad.mit.edu 36 4 160496721 160496721 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014247 exon23 c.G4435A p.A1479T . . . FSTL5 56884 broad.mit.edu 36 4 162796980 162796980 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020116 exon7 c.T844A p.W282R . . . AGA 175 broad.mit.edu 36 4 178600523 178600523 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001171988 exon1 c.A1G p.M1V . . . MTNR1A 4543 broad.mit.edu 36 4 187692380 187692380 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005958 exon2 c.C510T p.Y170Y . . . GPR125 166647 broad.mit.edu 36 4 21999816 21999816 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_145290 exon18 c.G2716A p.A906T . . . TLR10 81793 broad.mit.edu 36 4 38452198 38452198 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030956 exon4 c.A1409G p.E470G . . . ATP10D 57205 broad.mit.edu 36 4 47232724 47232724 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020453 exon7 c.G932A p.R311H . . . FRYL 285527 broad.mit.edu 36 4 48207638 48207638 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015030 exon58 c.T8266C p.C2756R . . . STK32B 55351 broad.mit.edu 36 4 5512830 5512830 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018401 exon9 c.G883A p.A295T . . . KIAA1211 57482 broad.mit.edu 36 4 56876411 56876411 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020722 exon8 c.G1986A p.A662A . . . EPHA5 2044 broad.mit.edu 36 4 65913488 65913488 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004439 exon12 c.G2078A p.R693H . . . TMPRSS11F 389208 broad.mit.edu 36 4 68613202 68613202 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207407 exon8 c.G811A p.A271T . . . YTHDC1 91746 broad.mit.edu 36 4 68871069 68871069 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001031732 exon11 c.G1594A p.V532M . . . ANKRD17 26057 broad.mit.edu 36 4 74182742 74182742 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198889 exon25 c.A4180G p.T1394A . . . AFP 174 broad.mit.edu 36 4 74537047 74537047 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001134 exon12 c.C1494T p.G498G . . . ZNF595 152687 broad.mit.edu 36 4 76252 76252 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_182524 exon4 c.T857C p.V286A . . . FRAS1 80144 broad.mit.edu 36 4 79640022 79640022 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_025074 exon61 c.G9239A p.R3080H . . . IBSP 3381 broad.mit.edu 36 4 88951933 88951933 + Silent SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004967 exon7 c.C801A p.G267G . . . BMPR1B 658 broad.mit.edu 36 4 96271554 96271554 + Missense_Mutation SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001203 exon10 c.T944C p.L315S . . . CTNND2 1501 broad.mit.edu 36 5 11212846 11212846 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001332 exon12 c.C2001T p.C667C . . . SLC22A4 6583 broad.mit.edu 36 5 131699527 131699527 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003059 exon8 c.C1379T p.A460V . . . DNAH5 1767 broad.mit.edu 36 5 13790378 13790378 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001369 exon66 c.G11438A p.R3813Q . . . LRRTM2 26045 broad.mit.edu 36 5 138237481 138237481 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015564 exon2 c.C668T p.A223V . . . PCDHA10 56139 broad.mit.edu 36 5 140216650 140216650 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031860 exon1 c.A833G p.Y278C . . . PCDHA11 56138 broad.mit.edu 36 5 140229920 140229920 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031861 exon1 c.G1048A p.A350T . . . PCDHA12 56137 broad.mit.edu 36 5 140235944 140235944 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031864 exon1 c.G703A p.V235M . . . PCDHAC1 56135 broad.mit.edu 36 5 140286941 140286941 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_031882 exon1 c.G280A p.V94I . . . PCDHB5 26167 broad.mit.edu 36 5 140496578 140496578 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015669 exon1 c.C1378T p.R460X . . . FCHSD1 89848 broad.mit.edu 36 5 141009204 141009204 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033449 exon5 c.G317A p.R106Q . . . ARAP3 64411 broad.mit.edu 36 5 141039512 141039512 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022481 exon3 c.G586T p.V196L . . . TRIO 7204 broad.mit.edu 36 5 14561201 14561201 + Silent SNP C T T rs55898643 unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_007118 exon57 c.C8964T p.G2988G . . . JAKMIP2 9832 broad.mit.edu 36 5 147020906 147020906 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014790 exon3 c.G425A p.R142Q . . . ABLIM3 22885 broad.mit.edu 36 5 148566780 148566780 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014945 exon6 c.G465T p.K155N . . . ARSI 340075 broad.mit.edu 36 5 149657176 149657176 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001012301 exon2 c.G1504A p.V502I . . . KIF4B 285643 broad.mit.edu 36 5 154375405 154375405 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001099293 exon1 c.G1793A p.R598H . . . TTC1 7265 broad.mit.edu 36 5 159370215 159370215 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003314 exon2 c.T102C p.P34P . . . ODZ2 57451 broad.mit.edu 36 5 167477977 167477977 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122679 exon10 c.A1916G p.Q639R . . . CNOT6 57472 broad.mit.edu 36 5 179925478 179925478 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015455 exon7 c.G612A p.R204R . . . ADAMTS16 170690 broad.mit.edu 36 5 5359763 5359763 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_139056 exon21 c.G3333A p.P1111P . . . PDE4D 5144 broad.mit.edu 36 5 58307946 58307946 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001197222 exon8 c.C1146T p.S382S . . . NSUN2 54888 broad.mit.edu 36 5 6660320 6660320 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017755 exon13 c.G1501A p.V501M . . . PIK3R1 5295 broad.mit.edu 36 5 67623923 67623923 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181523 exon7 c.T997A p.W333R . . . GTF2H2C 728340 broad.mit.edu 36 5 68904050 68904050 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001098728 exon8 c.G387A p.T129T . . . MAP1B 4131 broad.mit.edu 36 5 71525796 71525796 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005909 exon5 c.C858T p.G286G . . . FAM169A 26049 broad.mit.edu 36 5 74132560 74132560 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015566 exon10 c.G1004A p.R335Q . . . ADCY2 108 broad.mit.edu 36 5 7467706 7467706 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020546 exon2 c.G231A p.A77A . . . OTP 23440 broad.mit.edu 36 5 76968425 76968425 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032109 exon2 c.G424A p.G142R . . . HAPLN1 1404 broad.mit.edu 36 5 82973197 82973197 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001884 exon5 c.C939T p.S313S . . . GPR98 84059 broad.mit.edu 36 5 90094968 90094968 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_032119 exon59 c.C12211T p.R4071X . . . FCHO2 115548 broad.mit.edu 36 5 72300085 72300085 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001146032 exon2 c.38delA p.E13fs . . . TAPBP 6892 broad.mit.edu 36 6 33381050 33381051 + Frame_Shift_Ins INS - G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 - - Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_003190 exon4 c.562_563insC p.T188fs . . . GJA1 2697 broad.mit.edu 36 6 121810407 121810407 + Missense_Mutation SNP C T T rs2227887 byFrequency TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000165 exon2 c.C715T p.R239W . . . NCOA7 135112 broad.mit.edu 36 6 126252663 126252663 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199620 exon11 c.G1770A p.P590P . . . THEMIS 387357 broad.mit.edu 36 6 128175746 128175746 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001010923 exon4 c.C1733T p.T578M . . . LAMA2 3908 broad.mit.edu 36 6 129870476 129870476 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001079823 exon61 c.A8841C p.K2947N . . . SYNE1 23345 broad.mit.edu 36 6 152644728 152644728 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015293 exon12 c.C1860A p.D620E . . . RBM16 22828 broad.mit.edu 36 6 155195189 155195189 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014892 exon20 c.G2784A p.P928P . . . TULP4 56995 broad.mit.edu 36 6 158844368 158844368 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020245 exon13 c.C3685T p.P1229S . . . MAP3K4 4216 broad.mit.edu 36 6 161438122 161438122 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006724 exon16 c.C3448T p.R1150C . . . GPLD1 2822 broad.mit.edu 36 6 24545378 24545378 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001503 exon21 c.C2139T p.R713R . . . HIST1H4E 8367 broad.mit.edu 36 6 26313076 26313076 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003545 exon1 c.G225A p.E75E . . . GABBR1 2550 broad.mit.edu 36 6 29680389 29680389 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021904 exon21 c.G2387A p.R796H . . . HLA-E 3133 broad.mit.edu 36 6 30568316 30568316 + Silent SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005516 exon7 c.G1056T p.G352G . . . C6orf15 29113 broad.mit.edu 36 6 31188016 31188016 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014070 exon2 c.G99T p.E33D . . . ANKS1A 23294 broad.mit.edu 36 6 35155291 35155291 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015245 exon15 c.C2304T p.D768D . . . SRPK1 6732 broad.mit.edu 36 6 35911115 35911115 + Missense_Mutation SNP G C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G C G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003137 exon16 c.C1912G p.P638A . . . CUL9 23113 broad.mit.edu 36 6 43261261 43261261 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015089 exon3 c.C685T p.L229L . . . PKHD1 5314 broad.mit.edu 36 6 51983110 51983110 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_170724 exon35 c.G5707A p.V1903I . . . DSP 1832 broad.mit.edu 36 6 7528616 7528616 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008844 exon24 c.G4325A p.S1442N . . . FAM46A 55603 broad.mit.edu 36 6 82516173 82516173 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017633 exon3 c.G1287A p.T429T . . . HTR1E 3354 broad.mit.edu 36 6 87782393 87782393 + Missense_Mutation SNP G A A rs3828741 byCluster;byFrequency;byHapMap TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000865 exon2 c.G622A p.A208T . . . ATXN1 6310 broad.mit.edu 36 6 16435892 16435894 + In_Frame_Del DEL TGA - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 TGA TGA Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_000332 exon8 c.627_629del p.209_210del . . . KCTD20 222658 broad.mit.edu 36 6 36560554 36560554 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_173562 exon7 c.942delA p.L314fs . . . ZNF292 23036 broad.mit.edu 36 6 87985077 87985077 + Frame_Shift_Del DEL T - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_015021 exon4 c.447delT p.H149fs . . . DNAJC2 27000 broad.mit.edu 36 7 102772267 102772267 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_001129887 exon1 c.C39T p.T13T . . . RELN 5649 broad.mit.edu 36 7 102947014 102947014 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005045 exon49 c.T7854C p.S2618S . . . PIK3CG 5294 broad.mit.edu 36 7 106296575 106296575 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002649 exon2 c.G1333A p.A445T PIK3CG,central_nervous_system,brain,Substitution - Missense,-1 . . GPR22 2845 broad.mit.edu 36 7 106902900 106902900 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005295 exon3 c.G1159A p.V387I . . . DOCK4 9732 broad.mit.edu 36 7 111192472 111192472 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014705 exon38 c.C3931T p.R1311C . . . RBM28 55131 broad.mit.edu 36 7 127751936 127751936 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001166135 exon8 c.G828A p.A276A . . . PLXNA4 91584 broad.mit.edu 36 7 131516695 131516695 + Silent SNP C T T rs10248377 byCluster;byFrequency;byHapMap TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020911 exon18 c.G3477A p.T1159T . . . CALD1 800 broad.mit.edu 36 7 134268656 134268656 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_033157 exon5 c.A596C p.K199T . . . TRIM24 8805 broad.mit.edu 36 7 137914763 137914763 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003852 exon15 c.G2429A p.C810Y . . . BRAF 673 broad.mit.edu 36 7 140099605 140099605 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004333 exon15 c.T1799A p.V600E BRAF,pituitary,NS,Substitution - Missense,0 . . HDAC9 9734 broad.mit.edu 36 7 18591528 18591528 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178423 exon3 c.T122A p.V41D . . . HOXA2 3199 broad.mit.edu 36 7 27107287 27107287 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006735 exon2 c.C714T p.S238S . . . HOXA3 3200 broad.mit.edu 36 7 27114836 27114836 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_030661 exon3 c.G555A p.P185P . . . RP9 6100 broad.mit.edu 36 7 33102649 33102649 + Nonsense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_203288 exon5 c.C448T p.R150X . . . INHBA 3624 broad.mit.edu 36 7 41696301 41696301 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002192 exon3 c.C753T p.G251G . . . AEBP1 165 broad.mit.edu 36 7 44118289 44118289 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001129 exon17 c.G2061A p.A687A . . . FOXK1 221937 broad.mit.edu 36 7 4747075 4747075 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001037165 exon2 c.C641T p.P214L . . . DTX2 113878 broad.mit.edu 36 7 75950163 75950163 + Missense_Mutation SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001102595 exon3 c.A671G p.Y224C . . . CYP3A5 1577 broad.mit.edu 36 7 99083939 99083939 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000777 exon13 c.G1434A p.T478T . . . IQCE 23288 broad.mit.edu 36 7 2596260 2596261 + Frame_Shift_Del DEL AG - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 AG AG Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152558 exon14 c.1238_1239del p.413_413del . . . RP1L1 94137 broad.mit.edu 36 8 10502188 10502188 + Missense_Mutation SNP G T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G T G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178857 exon4 c.C6830A p.P2277H . . . TTC35 9694 broad.mit.edu 36 8 109531865 109531865 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014673 exon3 c.G187A p.A63T . . . PTK2 5747 broad.mit.edu 36 8 141780199 141780199 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001199649 exon26 c.C2472T p.R824R . . . CYP11B1 1584 broad.mit.edu 36 8 143954155 143954155 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001026213 exon6 c.C1096T p.R366C . . . DLGAP2 9228 broad.mit.edu 36 8 1484965 1484965 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004745 exon2 c.C699T p.S233S . . . BMP1 649 broad.mit.edu 36 8 22087115 22087115 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006129 exon2 c.A204G p.V68V . . . CSMD1 64478 broad.mit.edu 36 8 2819519 2819519 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_033225 exon56 c.C8602T p.R2868C . . . KIF13B 23303 broad.mit.edu 36 8 29036854 29036854 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015254 exon28 c.G3427A p.A1143T . . . PRKDC 5591 broad.mit.edu 36 8 49008196 49008196 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001081640 exon16 c.C1713T p.S571S . . . OTUD6B 51633 broad.mit.edu 36 8 92165498 92165498 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_016023 exon6 c.867delA p.S289fs . . . ACTL7A 10881 broad.mit.edu 36 9 110664614 110664614 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006687 exon1 c.C191A p.P64H . . . CTNNAL1 8727 broad.mit.edu 36 9 110785260 110785260 + Missense_Mutation SNP T A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T A T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003798 exon6 c.A886T p.I296F . . . KIAA0368 23392 broad.mit.edu 36 9 113199165 113199165 + Nonsense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001080398 exon26 c.G3276A p.W1092X . . . OR1K1 392392 broad.mit.edu 36 9 124602838 124602838 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_080859 exon1 c.G616A p.A206T . . . RALGPS1 9649 broad.mit.edu 36 9 129014819 129014819 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_014636 exon16 c.C1446T p.H482H . . . FAM129B 64855 broad.mit.edu 36 9 129325833 129325833 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_022833 exon5 c.G535A p.E179K . . . CCBL1 883 broad.mit.edu 36 9 130637674 130637674 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001122672 exon9 c.C799T p.R267C . . . USP20 10868 broad.mit.edu 36 9 131670175 131670175 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001008563 exon11 c.C761T p.T254M . . . OLFM1 10439 broad.mit.edu 36 9 137151446 137151446 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014279 exon6 c.G1005A p.S335S . . . ARRDC1 92714 broad.mit.edu 36 9 139628385 139628385 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_152285 exon5 c.T516C p.T172T . . . CER1 9350 broad.mit.edu 36 9 14710297 14710297 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005454 exon2 c.G595A p.A199T . . . CNTLN 54875 broad.mit.edu 36 9 17330874 17330874 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_017738 exon11 c.G1694A p.R565Q . . . LINGO2 158038 broad.mit.edu 36 9 27940324 27940324 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152570 exon7 c.C346T p.R116C . . . GBA2 57704 broad.mit.edu 36 9 35730287 35730287 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C Unknown Unknown Somatic Phase_I Capture Illumina HiSeq NM_020944 exon7 c.G1202A p.R401Q . . . PGM5 5239 broad.mit.edu 36 9 70284223 70284223 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_021965 exon8 c.G1229A p.R410Q . . . RASEF 158158 broad.mit.edu 36 9 84801782 84801782 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152573 exon14 c.T1885G p.F629V . . . RASEF 158158 broad.mit.edu 36 9 84805280 84805280 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152573 exon11 c.C1463T p.T488I . . . WWC3 55841 broad.mit.edu 36 X 10022212 10022212 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015691 exon7 c.C548T p.S183F . . . NRK 203447 broad.mit.edu 36 X 105018990 105018990 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_198465 exon5 c.C300T p.Y100Y . . . ATG4A 115201 broad.mit.edu 36 X 107264280 107264280 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178270 exon6 c.A450G p.T150T . . . DCAF12L1 139170 broad.mit.edu 36 X 125513120 125513120 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_178470 exon1 c.G1153A p.E385K . . . FGF13 2258 broad.mit.edu 36 X 137620727 137620727 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004114 exon1 c.G105T p.K35N . . . MAGEC3 139081 broad.mit.edu 36 X 140796923 140796923 + Missense_Mutation SNP T G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T G T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_138702 exon4 c.T584G p.L195R . . . IDS 3423 broad.mit.edu 36 X 148387706 148387706 + Missense_Mutation SNP A T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_006123 exon5 c.T545A p.L182Q . . . GABRQ 55879 broad.mit.edu 36 X 151566272 151566272 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_018558 exon4 c.C514T p.R172W . . . MPP1 4354 broad.mit.edu 36 X 153667805 153667805 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002436 exon6 c.C545T p.A182V . . . SPRY3 10251 broad.mit.edu 36 X 154657212 154657212 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_005840 exon2 c.G485A p.R162H . . . ARSE 415 broad.mit.edu 36 X 2866245 2866245 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_000047 exon9 c.C1180T p.R394C . . . MAGEB4 4115 broad.mit.edu 36 X 30170903 30170903 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002367 exon1 c.C730T p.L244F . . . MAGEB1 4112 broad.mit.edu 36 X 30178585 30178585 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002363 exon4 c.G54A p.A18A . . . DMD 1756 broad.mit.edu 36 X 31134695 31134695 + Missense_Mutation SNP C A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C A C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004015 exon5 c.G370T p.G124W . . . MXRA5 25878 broad.mit.edu 36 X 3250232 3250232 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_015419 exon5 c.G3494A p.R1165Q . . . TBC1D25 4943 broad.mit.edu 36 X 48288341 48288341 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_002536 exon3 c.G374A p.R125Q . . . ERAS 3266 broad.mit.edu 36 X 48572767 48572767 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_181532 exon1 c.C290T p.A97V . . . KCND1 3750 broad.mit.edu 36 X 48708417 48708417 + Missense_Mutation SNP A C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A C A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_004979 exon2 c.T1162G p.F388V . . . GRIPAP1 56850 broad.mit.edu 36 X 48723166 48723166 + Silent SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_020137 exon18 c.C1662T p.H554H . . . AKAP4 8852 broad.mit.edu 36 X 49845532 49845532 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_003886 exon5 c.C572T p.P191L . . . MAGED1 9500 broad.mit.edu 36 X 51654549 51654549 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001005333 exon3 c.C132T p.C44C . . . WNK3 65267 broad.mit.edu 36 X 54337970 54337970 + Silent SNP T C C novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 T T T C T T Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001002838 exon8 c.A1434G p.K478K . . . FAM123B 139285 broad.mit.edu 36 X 63327954 63327954 + Silent SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_152424 exon2 c.G1938A p.R646R . . . ZC4H2 55906 broad.mit.edu 36 X 64058466 64058466 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001178032 exon2 c.G112A p.A38T . . . IGBP1 3476 broad.mit.edu 36 X 69271220 69271220 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001551 exon3 c.G311A p.R104Q . . . ACRC 93953 broad.mit.edu 36 X 70740444 70740444 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_052957 exon8 c.G592A p.D198N . . . FLJ44635 392490 broad.mit.edu 36 X 71296495 71296495 + Missense_Mutation SNP G A A novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 G G G A G G Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_207422 exon2 c.G91A p.G31R . . . RPS6KA6 27330 broad.mit.edu 36 X 83243738 83243738 + Nonsense_Mutation SNP A T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A T A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_014496 exon18 c.T1739A p.L580X . . . CSTF2 1478 broad.mit.edu 36 X 99963965 99963965 + Silent SNP A G G novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A A G A A Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq NM_001325 exon3 c.A207G p.T69T . . . SSX6 280657 broad.mit.edu 36 X 47863898 47863898 + Missense_Mutation SNP C T T novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 C C C T C C Unknown Valid Somatic Phase_I Capture Illumina Illumina HiSeq . . . . . . . SAT1 6303 broad.mit.edu 36 X 23712068 23712068 + Frame_Shift_Del DEL A - - novel unknown TCGA-AA-3833-01A-01W-0900-09 TCGA-AA-3833-10A-01W-0900-09 A A Unknown Unknown Somatic Phase_I Capture Illumina HiSeq . . . . . . .