Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PPRC1	23082	broad.mit.edu	36	10	103891270	103891270	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015062	exon5	c.C3015A	p.A1005A	.	.	.
HTRA1	5654	broad.mit.edu	36	10	124239098	124239098	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002775	exon3	c.A743C	p.K248T	.	.	.
CUBN	8029	broad.mit.edu	36	10	17007423	17007423	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001081	exon43	c.A6469T	p.N2157Y	.	.	.
GPR158	57512	broad.mit.edu	36	10	25550092	25550092	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020752	exon2	c.G1008A	p.E336E	.	.	.
PSAP	5660	broad.mit.edu	36	10	73249619	73249619	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001042465	exon11	c.G1059T	p.P353P	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98797446	98797446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003061	exon16	c.C1625T	p.T542M	.	.	.
ATM	472	broad.mit.edu	36	11	107705173	107705173	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000051	exon49	c.C7305G	p.N2435K	.	.	.
TMPRSS13	84000	broad.mit.edu	36	11	117280020	117280020	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001077263	exon11	c.C1388T	p.T463I	.	.	.
SORL1	6653	broad.mit.edu	36	11	120964016	120964016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003105	exon28	c.G3892A	p.G1298R	.	.	.
PGAP2	27315	broad.mit.edu	36	11	3795328	3795328	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014489	exon3	c.C335T	p.A112V	.	.	.
SPRYD5	84767	broad.mit.edu	36	11	55415409	55415409	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032681	exon7	c.T1084C	p.W362R	.	.	.
OR5AP2	338675	broad.mit.edu	36	11	56165573	56165573	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001002925	exon1	c.C919A	p.L307I	.	.	.
OR1S2	219958	broad.mit.edu	36	11	57728088	57728088	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004459	exon1	c.T142C	p.Y48H	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72231455	72231455	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014824	exon17	c.T1785C	p.R595R	.	.	.
TALDO1	6888	broad.mit.edu	36	11	753910	753910	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006755	exon6	c.C801T	p.N267N	.	.	.
USP35	57558	broad.mit.edu	36	11	77586652	77586652	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020798	exon3	c.C696A	p.A232A	.	.	.
ME3	10873	broad.mit.edu	36	11	85945264	85945264	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001161586	exon4	c.G446A	p.G149D	.	.	.
SESN3	143686	broad.mit.edu	36	11	94557303	94557303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144665	exon6	c.G866A	p.R289H	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18692194	18692194	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004570	exon32	c.G4303T	p.E1435X	.	.	.
COL2A1	1280	broad.mit.edu	36	12	46679975	46679975	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001844	exon2	c.G286A	p.A96T	.	.	.
HOXC13	3229	broad.mit.edu	36	12	52625158	52625158	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017410	exon2	c.A844C	p.S282R	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54765189	54765189	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001005915	exon3	c.C378G	p.N126K	.	.	.
R3HDM2	22864	broad.mit.edu	36	12	55938164	55938164	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014925	exon19	c.C2283T	p.S761S	.	.	.
VWF	7450	broad.mit.edu	36	12	5998555	5998555	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000552	exon28	c.G4290A	p.K1430K	.	.	.
NAV3	89795	broad.mit.edu	36	12	76939702	76939702	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014903	exon9	c.C1952T	p.S651F	.	.	.
ACSS3	79611	broad.mit.edu	36	12	80052895	80052895	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024560	exon3	c.G626T	p.S209I	.	.	.
GOLGA3	2802	broad.mit.edu	36	12	131903333	131903333	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001172557	exon3	c.272delC	p.P91fs	.	.	.
DIS3	22894	broad.mit.edu	36	13	72233948	72233948	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001128226	exon18	c.C2258T	p.A753V	.	.	.
RNASE11	122651	broad.mit.edu	36	14	20122211	20122211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_145250	exon3	c.G263A	p.G88E	.	.	.
RALGAPA1	253959	broad.mit.edu	36	14	35166834	35166834	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_194301	exon33	c.G4552T	p.G1518C	.	.	.
HEATR4	399671	broad.mit.edu	36	14	73059385	73059385	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_203309	exon2	c.G84C	p.Q28H	.	.	.
TCL1A	8115	broad.mit.edu	36	14	95247865	95247865	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021966	exon3	c.G325C	p.E109Q	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95851556	95851556	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018036	exon22	c.C3479A	p.S1160X	.	.	.
C15orf52	388115	broad.mit.edu	36	15	38414819	38414819	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207380	exon11	c.G1437A	p.Q479Q	.	.	.
EXD1	161829	broad.mit.edu	36	15	39263836	39263836	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152596	exon10	c.T1130A	p.V377E	.	.	.
C15orf33	196951	broad.mit.edu	36	15	47654530	47654530	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152647	exon8	c.C615A	p.S205S	.	.	.
MTFMT	123263	broad.mit.edu	36	15	63100965	63100965	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139242	exon4	c.G585T	p.V195V	.	.	.
AKAP13	11214	broad.mit.edu	36	15	84074926	84074926	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006738	exon30	c.A7278G	p.K2426K	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	10963900	10963900	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015226	exon3	c.G297A	p.Q99Q	.	.	.
PALB2	79728	broad.mit.edu	36	16	23526701	23526701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024675	exon12	c.C3335T	p.P1112L	.	.	.
UBN1	29855	broad.mit.edu	36	16	4860853	4860853	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016936	exon10	c.G1438T	p.E480X	.	.	.
IRX5	10265	broad.mit.edu	36	16	53523931	53523931	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005853	exon2	c.A270G	p.T90T	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66134249	66134249	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001193522	exon13	c.C2071G	p.L691V	.	.	.
CHST5	23563	broad.mit.edu	36	16	74121563	74121563	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024533	exon3	c.G221T	p.G74V	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75058861	75058861	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033401	exon10	c.A1594T	p.S532C	.	.	.
KIF1C	10749	broad.mit.edu	36	17	4866715	4866716	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006612	exon22	c.2615_2616insC	p.I872fs	.	.	.
SPECC1	92521	broad.mit.edu	36	17	20048653	20048653	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001033555	exon2	c.C456A	p.N152K	.	.	.
HNF1B	6928	broad.mit.edu	36	17	33167697	33167697	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001165923	exon3	c.G697C	p.E233Q	.	.	.
BPTF	2186	broad.mit.edu	36	17	63331350	63331350	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182641	exon9	c.A2744T	p.H915L	.	.	.
SOX9	6662	broad.mit.edu	36	17	67630460	67630460	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000346	exon2	c.437delT	p.L146fs	.	.	.
ANKRD29	147463	broad.mit.edu	36	18	19468094	19468095	+	Missense_Mutation	DNP	CA	AC	AC	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	CA	CA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173505	exon5	c.347_348GT	.	.	.	.
CELF4	56853	broad.mit.edu	36	18	33107092	33107092	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001025089	exon7	c.A804T	p.S268S	.	.	.
CELF4	56853	broad.mit.edu	36	18	33399327	33399327	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025089	exon1	c.C276A	p.G92G	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5423506	5423506	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012307	exon8	c.A874G	p.K292E	.	.	.
YES1	7525	broad.mit.edu	36	18	732951	732951	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005433	exon8	c.C1027T	p.P343S	.	.	.
ATG4D	84971	broad.mit.edu	36	19	10520690	10520690	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032885	exon6	c.G946A	p.V316M	.	.	.
RAB3D	9545	broad.mit.edu	36	19	11307168	11307168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004283	exon4	c.C427T	p.R143C	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11920831	11920831	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144566	exon4	c.A992G	p.K331R	.	.	.
CIB3	117286	broad.mit.edu	36	19	16145243	16145243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_054113	exon1	c.C44T	p.A15V	.	.	.
AP1M1	8907	broad.mit.edu	36	19	16180905	16180905	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001130524	exon5	c.A463T	p.N155Y	.	.	.
NWD1	284434	broad.mit.edu	36	19	16779880	16779880	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001007525	exon18	c.C4220T	p.S1407F	.	.	.
PIAS4	51588	broad.mit.edu	36	19	3964016	3964016	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015897	exon2	c.G123T	p.R41S	.	.	.
SHD	56961	broad.mit.edu	36	19	4235815	4235815	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020209	exon4	c.C630T	p.G210G	.	.	.
CCDC8	83987	broad.mit.edu	36	19	51606331	51606331	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032040	exon1	c.G1577C	p.R526T	.	.	.
EMR1	2015	broad.mit.edu	36	19	6848477	6848477	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001974	exon5	c.C433A	p.H145N	.	.	.
MUC16	94025	broad.mit.edu	36	19	8908677	8908677	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024690	exon5	c.G33954A	p.V11318V	.	.	.
MUC16	94025	broad.mit.edu	36	19	8920941	8920941	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon3	c.T27505A	p.S9169T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8934176	8934176	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024690	exon3	c.C14270G	p.P4757R	.	.	.
S1PR1	1901	broad.mit.edu	36	1	101477708	101477708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001400	exon2	c.G580A	p.V194M	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10628824	10628824	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001079843	exon17	c.A3644G	p.N1215S	.	.	.
NRAS	4893	broad.mit.edu	36	1	115058052	115058052	+	Missense_Mutation	SNP	T	A	A	rs11554290	byHapMap	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002524	exon3	c.A182T	p.Q61L	 NRAS,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,-1 	.	.
SLC22A15	55356	broad.mit.edu	36	1	116408615	116408615	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018420	exon10	c.G1328A	p.R443Q	.	.	.
TDRKH	11022	broad.mit.edu	36	1	150018296	150018296	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083965	exon5	c.C468T	p.A156A	.	.	.
DDR2	4921	broad.mit.edu	36	1	161008568	161008568	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001014796	exon14	c.G1635T	p.M545I	.	.	.
SEC16B	89866	broad.mit.edu	36	1	176176401	176176401	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033127	exon17	c.A2094T	p.P698P	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179887128	179887128	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_000721	exon7	c.G983T	p.W328L	.	.	.
TAS1R2	80834	broad.mit.edu	36	1	19053944	19053944	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152232	exon3	c.T607A	p.W203R	.	.	.
ECE1	1889	broad.mit.edu	36	1	21457913	21457913	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001113348	exon6	c.G574T	p.G192C	.	.	.
SPATA17	128153	broad.mit.edu	36	1	216014468	216014468	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138796	exon7	c.A689T	p.E230V	.	.	.
NID1	4811	broad.mit.edu	36	1	234256063	234256063	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002508	exon8	c.G1740A	p.V580V	.	.	.
OR2T27	403239	broad.mit.edu	36	1	246879975	246879975	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001824	exon1	c.C834A	p.Y278X	.	.	.
GJA4	2701	broad.mit.edu	36	1	35032902	35032902	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002060	exon2	c.A501C	p.A167A	.	.	.
KIAA0319L	79932	broad.mit.edu	36	1	35698550	35698550	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024874	exon9	c.C1370T	p.S457F	.	.	.
EIF2C4	192670	broad.mit.edu	36	1	36070027	36070027	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017629	exon9	c.T1024A	p.C342S	.	.	.
RLF	6018	broad.mit.edu	36	1	40476429	40476429	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_012421	exon8	c.A3468T	p.K1156N	.	.	.
USP24	23358	broad.mit.edu	36	1	55335886	55335886	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015306	exon48	c.C5688G	p.R1896R	.	.	.
SLC2A7	155184	broad.mit.edu	36	1	9005703	9005703	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_207420	exon3	c.G172A	p.E58K	.	.	.
LRRC8D	55144	broad.mit.edu	36	1	90171408	90171408	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134479	exon3	c.A193T	p.K65X	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91946926	91946926	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195683	exon14	c.T2166C	p.C722C	.	.	.
EVI5	7813	broad.mit.edu	36	1	92862349	92862349	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005665	exon14	c.A1751T	p.K584I	.	.	.
CD1E	913	broad.mit.edu	36	1	156592925	156592925	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001185107	exon4	c.648delC	p.I216fs	.	.	.
LGALS8	3964	broad.mit.edu	36	1	234773541	234773541	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201544	exon8	c.608delT	p.V203fs	.	.	.
CST5	1473	broad.mit.edu	36	20	23808273	23808273	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001900	exon1	c.C41T	p.A14V	.	.	.
C20orf186	149954	broad.mit.edu	36	20	31159237	31159237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_182519	exon15	c.C1771T	p.P591S	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40739998	40739998	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_133170	exon7	c.C1075T	p.R359X	.	.	.
MMP9	4318	broad.mit.edu	36	20	44072612	44072612	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004994	exon3	c.C455T	p.T152M	.	.	.
SLC35C2	51006	broad.mit.edu	36	20	44414125	44414125	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173073	exon8	c.T746A	p.L249H	.	.	.
C20orf85	128602	broad.mit.edu	36	20	56169180	56169180	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178456	exon4	c.G310T	p.A104S	.	.	.
APCDD1L	164284	broad.mit.edu	36	20	56469473	56469473	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_153360	exon4	c.G1285A	p.G429R	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33056335	33056335	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_013329	exon4	c.C814T	p.R272W	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34159503	34159503	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003024	exon32	c.G4069T	p.V1357F	.	.	.
PIWIL3	440822	broad.mit.edu	36	22	23481800	23481800	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001008496	exon6	c.A643T	p.T215S	.	.	.
AP1B1	162	broad.mit.edu	36	22	28077802	28077802	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166019	exon8	c.G951A	p.L317L	.	.	.
DEPDC5	9681	broad.mit.edu	36	22	30486683	30486683	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014662	exon4	c.A188G	p.Q63R	.	.	.
APOL1	8542	broad.mit.edu	36	22	34980942	34980942	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145343	exon3	c.A43C	p.S15R	.	.	.
BIK	638	broad.mit.edu	36	22	41855198	41855199	+	Missense_Mutation	DNP	GC	AA	AA	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001197	exon5	c.426_427AA	.	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45171251	45171251	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014246	exon13	c.G5758T	p.G1920W	.	.	.
MAP2	4133	broad.mit.edu	36	2	210298747	210298747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031847	exon11	c.C1168T	p.R390C	.	.	.
NGEF	25791	broad.mit.edu	36	2	233458264	233458264	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001114090	exon8	c.C1131T	p.S377S	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68726596	68726596	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_138964	exon1	c.G139T	p.D47Y	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102445156	102445156	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016247	exon13	c.C2709T	p.F903F	.	.	.
PHLDB2	90102	broad.mit.edu	36	3	113163662	113163662	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001134439	exon13	c.A2890T	p.M964L	.	.	.
BOC	91653	broad.mit.edu	36	3	114473956	114473956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_033254	exon7	c.C677T	p.A226V	.	.	.
KALRN	8997	broad.mit.edu	36	3	125632246	125632246	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003947	exon16	c.T2757G	p.N919K	.	.	.
COPB2	9276	broad.mit.edu	36	3	140562633	140562633	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004766	exon17	c.G2190C	p.M730I	.	.	.
ACPL2	92370	broad.mit.edu	36	3	142480957	142480957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152282	exon6	c.C286T	p.R96C	.	.	.
TNIK	23043	broad.mit.edu	36	3	172282826	172282826	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001161565	exon25	c.G2969C	p.S990T	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35760418	35760418	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016300	exon18	c.C1989T	p.N663N	.	.	.
CCDC13	152206	broad.mit.edu	36	3	42756238	42756238	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_144719	exon9	c.G1056A	p.M352I	.	.	.
ALS2CL	259173	broad.mit.edu	36	3	46698034	46698034	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001190707	exon12	c.C1234A	p.H412N	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138670273	138670273	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_019035	exon1	c.C2420G	p.T807R	.	.	.
KIAA1712	80817	broad.mit.edu	36	4	175467639	175467639	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001040157	exon8	c.C742G	p.L248V	.	.	.
FAT1	2195	broad.mit.edu	36	4	187761472	187761472	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005245	exon19	c.C11202G	p.F3734L	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20153316	20153317	+	Missense_Mutation	DNP	CC	AT	AT	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004787	exon21	c.2245_2246AT	.	.	.	.
N4BP2	55728	broad.mit.edu	36	4	39780219	39780219	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_018177	exon4	c.G359A	p.R120H	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54850002	54850002	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006206	exon21	c.G2844A	p.E948E	.	.	.
MAN2B2	23324	broad.mit.edu	36	4	6657930	6657930	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015274	exon11	c.C1787A	p.T596N	.	.	.
ANKRD56	345079	broad.mit.edu	36	4	78036481	78036481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001029870	exon1	c.G1546A	p.D516N	.	.	.
PRKG2	5593	broad.mit.edu	36	4	82344956	82344956	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006259	exon1	c.A270T	p.G90G	.	.	.
SEC31A	22872	broad.mit.edu	36	4	83982362	83982362	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001191049	exon21	c.G2908C	p.G970R	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135679271	135679271	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020389	exon3	c.C876T	p.N292N	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140244069	140244069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_031865	exon1	c.G2032A	p.A678T	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140534122	140534122	+	Missense_Mutation	SNP	G	A	A	rs17844457	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018940	exon1	c.G1522A	p.A508T	.	.	.
LPCAT1	79888	broad.mit.edu	36	5	1547916	1547916	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024830	exon3	c.C392T	p.T131M	.	.	.
SQSTM1	8878	broad.mit.edu	36	5	179183643	179183643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142299	exon4	c.C229T	p.R77W	.	.	.
RXFP3	51289	broad.mit.edu	36	5	33972781	33972781	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_016568	exon1	c.C179T	p.A60V	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79068921	79068921	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153610	exon2	c.C8577T	p.S2859S	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	83005027	83005027	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001884	exon2	c.G72A	p.L24L	.	.	.
GPR98	84059	broad.mit.edu	36	5	90095013	90095013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_032119	exon59	c.C12256T	p.P4086S	.	.	.
REV3L	5980	broad.mit.edu	36	6	111801074	111801074	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_002912	exon13	c.A5177T	p.E1726V	.	.	.
TRDN	10345	broad.mit.edu	36	6	123933951	123933951	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006073	exon2	c.G48T	p.V16V	.	.	.
EPB41L2	2037	broad.mit.edu	36	6	131318937	131318937	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135555	exon2	c.G382T	p.D128Y	.	.	.
TAAR6	319100	broad.mit.edu	36	6	132933298	132933298	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_175067	exon1	c.G145C	p.G49R	.	.	.
HIST1H2BE	8344	broad.mit.edu	36	6	26292059	26292059	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003523	exon1	c.G57A	p.V19V	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34934273	34934273	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_017754	exon14	c.C2162T	p.P721L	.	.	.
FGD2	221472	broad.mit.edu	36	6	37084647	37084647	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173558	exon2	c.G128T	p.C43F	.	.	.
TMEM217	221468	broad.mit.edu	36	6	37294712	37294712	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145316	exon2	c.G73T	p.A25S	.	.	.
BTBD9	114781	broad.mit.edu	36	6	38673774	38673774	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001099272	exon2	c.T75C	p.H25H	.	.	.
SLC22A7	10864	broad.mit.edu	36	6	43376972	43376972	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006672	exon5	c.G943C	p.E315Q	.	.	.
DSP	1832	broad.mit.edu	36	6	7525219	7525219	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004415	exon23	c.A3797T	p.Q1266L	.	.	.
ZAN	7455	broad.mit.edu	36	7	100229460	100229460	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_003386	exon43	c.G7869T	p.G2623G	.	.	.
AASS	10157	broad.mit.edu	36	7	121553676	121553676	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005763	exon4	c.C461A	p.A154D	.	.	.
RNF133	168433	broad.mit.edu	36	7	122125503	122125503	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_139175	exon1	c.C706A	p.Q236K	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138234278	138234278	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164665	exon9	c.C3810A	p.I1270I	.	.	.
OR2A12	346525	broad.mit.edu	36	7	143423963	143423963	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001004135	exon1	c.A830T	p.Y277F	.	.	.
DPP6	1804	broad.mit.edu	36	7	154226539	154226539	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001039350	exon14	c.C1248G	p.I416M	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156692866	156692866	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_014671	exon12	c.T1432G	p.L478V	.	.	.
DFNA5	1687	broad.mit.edu	36	7	24705255	24705255	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001127453	exon10	c.T1406A	p.V469D	.	.	.
ZP3	7784	broad.mit.edu	36	7	75892346	75892347	+	Missense_Mutation	DNP	GG	TT	TT	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001110354	exon1	c.129_130TT	.	.	.	.
MGC26647	219557	broad.mit.edu	36	7	88261811	88261811	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_152706	exon2	c.C382T	p.Q128X	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105018041	105018041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100117	exon13	c.G2462A	p.R821Q	.	.	.
OXR1	55074	broad.mit.edu	36	8	107821817	107821817	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001198535	exon3	c.G263C	p.G88A	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139959353	139959353	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152888	exon3	c.C480A	p.D160E	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77853174	77853174	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_024721	exon4	c.A3269G	p.E1090G	.	.	.
SMC2	10592	broad.mit.edu	36	9	105931911	105931911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_006444	exon21	c.G2955A	p.M985I	.	.	.
KIAA1045	23349	broad.mit.edu	36	9	34962435	34962435	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015297	exon3	c.C471T	p.G157G	.	.	.
RUSC2	9853	broad.mit.edu	36	9	35545083	35545083	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014806	exon3	c.C2041G	p.L681V	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5919076	5919076	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001017969	exon6	c.A2466G	p.E822E	.	.	.
CORO2A	7464	broad.mit.edu	36	9	99934359	99934359	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003389	exon6	c.G694C	p.G232R	.	.	.
ZBTB26	57684	broad.mit.edu	36	9	124721363	124721363	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020924	exon2	c.672delT	p.T224fs	.	.	.
CTSL3	392360	broad.mit.edu	36	9	89578251	89578251	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ACSL4	2182	broad.mit.edu	36	X	108789338	108789338	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_004458	exon15	c.G1756A	p.A586T	.	.	.
SLC6A14	11254	broad.mit.edu	36	X	115492041	115492041	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_007231	exon7	c.C896A	p.A299D	.	.	.
CUL4B	8450	broad.mit.edu	36	X	119554863	119554863	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_001079872	exon15	c.A1993T	p.T665S	.	.	.
AP1S2	8905	broad.mit.edu	36	X	15755395	15755395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003916	exon5	c.G448A	p.V150I	.	.	.
ZBED1	9189	broad.mit.edu	36	X	2418076	2418076	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004729	exon2	c.G685T	p.G229C	.	.	.
FAM155B	27112	broad.mit.edu	36	X	68666168	68666168	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_015686	exon3	c.G1063T	p.E355X	.	.	.
MED12	9968	broad.mit.edu	36	X	70271738	70271738	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3819-01A-01W-0900-09	TCGA-AA-3819-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			Illumina HiSeq	NM_005120	exon36	c.C4935A	p.T1645T	.	.	.